Array 1 1249190-1247451 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011127.1 Dehalococcoides mccartyi strain 11a5 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1249189 29 100.0 32 ............................. ATAACCTGCGCTGCCGTTTTCCAGAAGCAGTT 1249128 29 100.0 32 ............................. TTCAATCTGGACATCTTCAGCCGTCAGAGAGT 1249067 29 100.0 33 ............................. CAACTGCACTCAGGACTGTTCTAAGCGTTTGGC 1249005 29 100.0 32 ............................. GAAAACTATCAGCTAATATTTGAGCATACGCA 1248944 29 100.0 32 ............................. TCCTGCCCAGAGAAATACGGGTTCGGCTTAGT 1248883 29 100.0 32 ............................. GCTACCTCTATAAATGGCTTCAAATCCAAATT 1248822 29 100.0 32 ............................. ATTGCTATTCATTATTTGGCTTGCTTAAGGCT 1248761 29 100.0 32 ............................. TGGTTCGGGCTGTCCGATGCCGACTTTAAAAA 1248700 29 100.0 33 ............................. TGTCAGTTCCTTGTCTTCTTCAGTTTCACCAGG 1248638 29 100.0 32 ............................. GCACCTGTACTGGCGGTACGCAATAGATGCAC 1248577 29 100.0 32 ............................. AACGCGGGCCAAGACGGGATATCCTCTACTGC 1248516 29 100.0 32 ............................. AAATCAAGGCCAGCGGTGATATGTCCAGAGAC 1248455 29 96.6 32 ............................T GGAACTACAGGATGGGTAGCGAAAAGACTAAA 1248394 29 100.0 32 ............................. GTGGTTATGAAAAACGCTTCGTTCTGGTGGAA 1248333 29 100.0 32 ............................. AGATGACCACCCGTTTATACGCACATCTGTCT 1248272 29 100.0 32 ............................. GCCTCTTTGGCTACTCGATGCTTGACTCCTAG 1248211 29 100.0 32 ............................. CCCTAGCGATGCGGCATATTTCAAAGAACAAA 1248150 29 100.0 32 ............................. TGATGCAATCATAGAACAACTAGCCAGAGAGT 1248089 29 100.0 32 ............................. TCCGGCTGGACAGCTGAAAACTGCTGGGTACG 1248028 29 100.0 32 ............................. ATATGTGCAGTATCGTTTGACCACTGTAGCAC 1247967 29 100.0 32 ............................. GGCTAATATTACTTCAGACCCGATACCCAGAG 1247906 29 100.0 32 ............................. ATAATTACTCTGGTGTATCAACTTATGCTGAT 1247845 29 100.0 32 ............................. GTAGGTGAGCCAATCGGTCCTGGTACTGTCCC 1247784 29 100.0 32 ............................. CCGGCATCGGTCTTTTTCCAACCTAGTTCCGA 1247723 29 100.0 32 ............................. TAACCTCCGCCGCCGCCGCCACCGCCTTCTCC 1247662 29 100.0 32 ............................. CAGTCATGGCAAATGTACTTCCCTCGGTGTAA 1247601 29 100.0 32 ............................. TCATTAAGGCAAATTAGAGGCCTTACTCAAGG 1247540 29 100.0 32 ............................. TAGCAGATAGAATACATATGCATGCTACTAGA 1247479 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTATTCCCCACGCATGTGGGGGTGAACCG # Left flank : CTATTCCAGTGGCGTTCAAGGTTGCAGCGGCCAATCCAACCGACCTTGAACGCCAGGTAAGAATTGAATGCCGGGAGGCCTTTTATGAATTCAAACTCCTTGAAAGGCTATTGACGGATATTGCGGAGGTACTTGGTGTTAGTGATGATATTGGAGAAAGTCCCGACGAGTTTGAGGGGCGCATTGTCACGTTGGCTATTGGAACCGAAGACGGGAGTTTTTCTTGGGAACCCGAGCGCTCGGGTGAGGGATGAACTCTGGGAACGGGCGATAAATAAGACGAAAGAAAGCGGTGCTATCCTCCAGATTTGGACAGACCAGAACTCCCAAGGATTTTCTTCCCGCCAATATGGTGAGAGGGAGCGGACTTTTGTTGATTTTGAAGGGTTATATCTGGTAAAAATAGACAAGAATACCAGCACTATCAAAACGCAAAATTCTGACACTACAAACCCCTAATCAGGAATGACCTGTTTTAAGGTCAGCTTTGTTATTTTAGG # Right flank : AAGTTGAGGCATTGACTCAGGCAATATGCTGTGTAGTTTCTGCGTTACCGGCCGGTAAATTGCCAGCTTACCGTGTCATTGCCGGTGGAACAGGATATTGCCCGCCTTTCAGCGCCTTGTAATTGGGATAAGATGATGGAAGTGTACTCAACTCTTGGACTCTATCCTAATGGGCATATAATGGCTAGCTTAAGGCAAAAATTAGGTAAAGGCATTTGTACCAACCGGGGTATAGAAAATCTGAAAGACGGGGATTACTTACTACTGCCGGATTGGTTATCCGCCGCCAGCGCCTCCGCGGAAAGGTAGTATTTATCACCCTTGAAGATGAACTCGGTCATATACACTGCATGGCATTCCCCGACACTTACCGGCAGAATGAGCTTACCTTCAAGCAGACTTTTCTGGTAGCAAGCGGTTATCTTTCCCGAAAAGATGGCGCTTGCAATATCGTGATTCAAAGGGTAGAAGCACTCAGCTTAGAAGCAAAAGTGCCTGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //