Array 1 6471-3093 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNPW01000878.1 Xanthomonas oryzae pv. oryzae strain YN30 scaffold877, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 6470 31 100.0 35 ............................... TTAGCAGCAATCCTGGCAAGATCTGCAAGGATACT 6404 31 100.0 35 ............................... TCGAGTTCGGACACTGGCAAACGCATGCTGCTTAC 6338 31 100.0 34 ............................... AATCTCACGTGCTTCATCACGGGTCATCAACCCG 6273 31 100.0 35 ............................... AGCTCGGCTGGCTTTGTCCGGGATGACTACCTGCG 6207 31 100.0 35 ............................... CCGGCAAACTTACCGTGGTCTAGCTTACGCAGGCC 6141 31 100.0 35 ............................... CTTCTGTTGGCGGAGGCCTTTCGGGCCCGTGTGTT 6075 31 100.0 34 ............................... CAGTAAACTTAACGTTGTCCAGCATGTCAAACAC 6010 31 100.0 35 ............................... ACGAGCTGGACTCAGTACCACAGAGACTCAACCGC 5944 31 100.0 34 ............................... TGGAATGTTGTGGACAAGGTAAGGGGCGTGGGTG 5879 31 100.0 35 ............................... TAGCTCGCTCATGTCGATGTCCTCCCGCGGTGTCG 5813 31 100.0 36 ............................... GCGCCATAGAGCGCGAATCTCAAATGCGGCCTTGCC 5746 31 100.0 34 ............................... ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC 5681 31 100.0 35 ............................... GCCATTGCCGCATACGCCGCGTTGCGCATCGCTGT 5615 31 100.0 34 ............................... CTGCACTGCGTCGCCACGCGCATCGACATTACGA 5550 31 100.0 34 ............................... ATAGCAGCCGCAGATTACTTCAAAGGATCTTGCC 5485 31 100.0 35 ............................... AACTGGGCAAGTCCTAAGCAGAGGTCAGCGCTGTT 5419 31 100.0 35 ............................... CCAGGGCAGCGGAAATCGTTCGTCTGGCTCAACAA 5353 31 100.0 34 ............................... ATGGCCTTGCGCCCGATCTTGCGGCACGCGACCT 5288 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 5223 31 100.0 35 ............................... TCTGGGACACGGCAGATATGGAGATGTGGGAAAGC 5157 31 100.0 34 ............................... AACTGGGCATCGCCCAAGCAGCGGTCAGCGCTGT 5092 31 100.0 35 ............................... GTGCCAAGTGTCTTACCAGCAACGGACGGCACATC 5026 31 100.0 34 ............................... TGGCAAACGGTGGTAACTCGTCTGCTATTAGACG 4961 31 100.0 35 ............................... TATAATGTCGCGTACATGACGTTTAATGACTCCGT 4895 31 100.0 35 ............................... TTGTCCTCATCCTGGAGCGCACCACCCGCCTGGCT 4829 31 100.0 35 ............................... CAGCGCAACATGGTCACGGTGCTGGCCGAAGAGCG 4763 31 100.0 35 ............................... GGCCAGACGCTGGGTGTCAGCCAGTCCGGTAATGA 4697 31 100.0 35 ............................... TCCGTAGGGGGTTCCCCCCTACACCCCCGGATCGG 4631 31 100.0 35 ............................... ATGAAGTCCGGCATGGGCAATAGGCTCAGCACGTA 4565 31 100.0 36 ............................... TGTGGATTTATGGGCGCGCTGTGTGGTTGGGCAGGC 4498 31 100.0 36 ............................... CTCAAAATTGCACAGTATCCAGAGGAGGTGACCACA 4431 31 100.0 35 ............................... GGACACGTTTCTTTTCCTTGCGGTATTTGTAAATG 4365 31 100.0 34 ............................... AGCACTACTGCTGCATACTGCCCAGCTATGCCCG 4300 31 100.0 36 ............................... TCGCCTGTGGACCCGGACCTGGACACGGTCGCGAAG 4233 31 100.0 34 ............................... GTTACTCGTGTCGAAGTACCAAGTCTTAATCCCA 4168 31 100.0 35 ............................... TCCGCCCCATCTAAGTCAATCCAACTTGTTGGTGC 4102 31 100.0 34 ............................... ACACAACTTCGCGCCATCATCGCCGGCGTAACGC 4037 31 100.0 38 ............................... AGGGTGTTAGCTGGCACAAGCTGAGAAGCAAATGGAGG 3968 31 100.0 35 ............................... ACTGTAAGGGCATTGATCCAGGGACAGGCCAATAT 3902 31 100.0 35 ............................... CTGCGAGGGCGAGCTCGCGTACTTGCTCAATATAC 3836 31 100.0 33 ............................... TTGGGCGGATAGGCGAAGCCGTGCGCATTGACC 3772 31 100.0 33 ............................... TCGAGCGCTTGGCGCGCGGCGAACGGATCGCGC 3708 31 100.0 35 ............................... AGACCGTTCGGGGTGATGCCGAGCAGCTTGACCAG 3642 31 100.0 34 ............................... CTCCGGGACGGTCAGCTAGAGACCTTCCGCTACG 3577 31 100.0 34 ............................... GCCCACACGCCGATCGCACAGAAATCCGATGTCT 3512 31 100.0 34 ............................... GCACATGACGCTGCGCGCATCGCGCAGATTCGCC 3447 31 100.0 35 ............................... CCATTTACAGACAGACCTGAGGGCGAAGTGGCGTA 3381 31 100.0 33 ............................... CCAAATCGGAGGTCTGCACTGGCATATGCTGAC 3317 31 100.0 33 ............................... GTTAAGGAAGCTCATGCAGTTGCCCAGGCTCGT 3253 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 3188 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 3123 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 52 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //