Array 1 193043-189591 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKN01000001.1 Salmonella enterica strain BCW_5105 NODE_1_length_711253_cov_4.46623, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 193042 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 192981 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 192920 29 100.0 32 ............................. ATCTAGGAATTAATAACAATCAGTTACTATCA 192859 29 100.0 32 ............................. GTTGCAAAGATATCGACGTTCAGGAGCCTGTC 192798 29 100.0 32 ............................. TATTACCCTTTCAGAATCTTTTTTGGATTGCT 192737 29 100.0 32 ............................. CTATCAACTGTAATACCTTTACTTTCGAGGAA 192676 29 100.0 33 ............................. GGCAAAGACGCGATCCTATCAACACTGCCCGCC 192614 29 100.0 33 ............................. TTACCCCGGCTCAAAAAGACATTCATAACGCGC 192552 29 100.0 32 ............................. CTCGCTAACTCCCTTAAAAGGGATATAATAAA 192491 29 100.0 32 ............................. TACTGGACATGAATAAGCGGTTAGATGAGGAA 192430 29 100.0 32 ............................. GTGATATTATTAACCTGTGAACTATCTACCTA 192369 29 100.0 32 ............................. GCCACCAGCACGACAAACAGCAACGCACGATT 192308 29 100.0 32 ............................. AGACCGCGAGCAGATAACGCAGCTGGAGGCAC 192247 29 100.0 32 ............................. GGGACGAGAAACGCCACTTTTATACCAAAAGG 192186 29 100.0 32 ............................. GAATTTAACCATCGTATTTGCAGTTATTGTTT 192125 29 100.0 33 ............................. GCAACTTTTCAGCCTGTTTATTAACTGCTCTAC 192063 29 100.0 32 ............................. CATGGCGGCGCGGCTGGCATCTTCATTCTCGC 192002 29 100.0 32 ............................. TTGACATTGTTGCTGATGGCGCAGTTATGCCC 191941 29 100.0 32 ............................. GTTATCAGATCGTTCAGCATTGGCGCTTTGCC 191880 29 100.0 32 ............................. CTCTGATTCAGTCCAGTAGAGATGCCATGTGT 191819 29 100.0 32 ............................. ACACCGTACTGAGTCTGAATGATGTGATTGGC 191758 29 100.0 32 ............................. CCAGTGCTCACTTGCTTCTACCCGCCCCGATC 191697 29 100.0 33 ............................. CTGGCACGCGTCTGCGATTTGCCGTAGTTCTAC 191635 29 100.0 32 ............................. GCACGTTTGCTGGGGCTGGAAGAAGGTGTTCA 191574 29 100.0 32 ............................. GATACCACCGAGCCTGAAGTGGCAAAAAGACA 191513 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 191452 29 100.0 32 ............................. AGCTTATTCAGATGGGGCATTTATCGCCTTAT 191391 29 100.0 32 ............................. ATAACAGCACTGGCTTCGTTACTTTTGCCAGC 191330 29 100.0 32 ............................. AAAAGAGCCAATACTCCCCAGTAAACCGCCAG 191269 29 100.0 32 ............................. TCGATCCTGACAGCCTGATGGCCCGCCGCGAA 191208 29 100.0 32 ............................. GGGAAAACCCAAAAAACGCGTTAAATCTTTTG 191147 29 100.0 32 ............................. AATTTAACGGCGATCAGGTTCGCATGCTGAAT 191086 29 100.0 32 ............................. ATTTACGTTTATTCAGTTCAGGCTAACGGCTC 191025 29 100.0 32 ............................. CAGATTGACATTAACGCCACGATAATCGAACG 190964 29 100.0 32 ............................. AAAGCGCAGATCAGGCTAACTCAATCAAATCG 190903 29 100.0 32 ............................. AATTTGGATCGCCCTGAGTTTAGGCGCATGGT 190842 29 100.0 32 ............................. TTGAATGTCCAGAGTGTGGCAATCACTTTACA 190781 29 100.0 32 ............................. CGTGTTCACCGCTGCGCCCGGTTATATCCCGT 190720 29 100.0 32 ............................. CGATATTGACGATGTATGACCGGAAAACCTCG 190659 29 100.0 32 ............................. GTGGCAAACGAACAGGGATTTGTCGGCAGTTA 190598 29 100.0 32 ............................. CCAGCCCTCCGGGGCTGGTTACTCGCAGAGCA 190537 29 100.0 32 ............................. CCTGCTGGCTGATGTTAAACGTAAAACCAGTG 190476 29 100.0 32 ............................. GCGACGCGGCGTGGTTTTAACTGGCTGCGGGG 190415 29 100.0 32 ............................. CAGGAAATTACGCGACTGTTTGATCTGAACCA 190354 29 100.0 32 ............................. AAGACGCAAGCGTATTGCGCCACATGCGAGAA 190293 29 100.0 32 ............................. CCCTGGCAGGAATACAAACTTGTGATGCTGCG 190232 29 100.0 32 ............................. TAGAGAAGGGGAAAGGCGAATTTATCCCTTCC 190171 29 100.0 32 ............................. TTGTTCTGTCGCTGTCGTTAAACTCTCCGTAA 190110 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 190049 29 96.6 32 ............T................ AGATCGCCAACGCGCTCGGTTTGCGTCTGGAA 189988 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 189927 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 189865 29 100.0 32 ............................. CATTGCTGCCAGCCAGAAGCGCCCTTCACTCA 189804 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 189743 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 189681 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 189620 29 96.6 0 A............................ | A [189593] ========== ====== ====== ====== ============================= ================================= ================== 57 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 212549-209714 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKN01000001.1 Salmonella enterica strain BCW_5105 NODE_1_length_711253_cov_4.46623, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 212548 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 212487 29 100.0 32 ............................. TTGAATGCCCAGAGTGTGGCAATCACTTTACA 212426 29 100.0 32 ............................. GGGGCGTCTGAAATTGAGGCTCTTTACGCTCG 212365 29 100.0 32 ............................. AGGAAAATCATTTTGCAATGATGAGCTATAAC 212304 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 212243 29 100.0 32 ............................. AACTTAGCACCCTAATTAGCTGATTGATGCGA 212182 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 212121 29 100.0 32 ............................. GCGTTCATCTGATCGCGATACTCTGATTTTTG 212060 29 100.0 32 ............................. ATAACCAGTCGCTTTTATATCGGTTCGCAGAC 211999 29 100.0 32 ............................. GCCTGGTTCTCTGAATCTGCAACGATTATCTG 211938 29 100.0 32 ............................. CCTTCTCCCGGTTAGCCTGGGTTTTGCTGCGC 211877 29 100.0 32 ............................. AAACCCCGGAAATGCAGGAGCGCGTTAAGGCG 211816 29 100.0 32 ............................. GGCCGCGTATTCTTCATCAGTGATGTACCGTT 211755 29 100.0 33 ............................. GGGATCGGCAAACTTGCTTTAACGCCGGACAAC 211693 29 100.0 32 ............................. CATTGAATCATATGGGACTCCGCACGTCGCGC 211632 29 100.0 32 ............................. CAGGAGGCGGATCAATGAGCTACATCGACAAA 211571 29 96.6 32 ............................A TAAATCGCTTTACCGAAGCGTCGGGTTAACTC 211510 29 100.0 32 ............................. ATCGTGTTTATAAAACAACGGTCAATACTCGC 211449 29 100.0 32 ............................. AGTGTGTCGGTTTGCCGGGAGTGCCAAAGGGT 211388 29 100.0 32 ............................. CCAGTTACCCCAACGAATATTAACGTAAGAAA 211327 29 100.0 32 ............................. AACTTGCCCGGTTACGGGCGGGTTTCATATGT 211266 29 100.0 32 ............................. CGCGCCCGGGCGATTCTCTGGCCCGTTGCGCC 211205 29 100.0 32 ............................. CGGGAAACAATCATCGGGCAAGAAATCGACCG 211144 29 100.0 32 ............................. CTGGTGGGGATCACGACAATATCAGCCATTTC 211083 29 100.0 32 ............................. TTAAGCGCATAACCGTTAAAGAATTGCATGAG 211022 29 100.0 32 ............................. GGACCGGATATATGAGCTTATACGTCATGAGC 210961 29 100.0 32 ............................. GATATGGGGTTGACGCTGGACAGATCTCCTAT 210900 29 100.0 32 ............................. TTTTAAATCACCACTGTATTTGCTAGCCATCC 210839 29 100.0 32 ............................. CAAAAAGTAACTCCGGCCCCGAATATACGGGG 210778 29 96.6 32 ............................A TCACGATATGAATATGGGGCTTACGTGCAACC 210717 29 100.0 32 ............................. GGCTGACAAAATCTGCCGTCGTCTTTCTTCGC 210656 29 100.0 32 ............................. GGCGCTGTATTAACCCACCGGTACTACAACAG 210595 29 100.0 32 ............................. CCATTTGCTCGCCGTTCCGGCCGAGTTCTGAG 210534 29 100.0 32 ............................. AGACAGGTTTTAGTATTTAGTGACCGGGTGCA 210473 29 100.0 32 ............................. GTGAGCGAATTATCAGTAGTTTCATTGGTGTT 210412 29 100.0 32 ............................. CTGGGGATCTGCATGGACTCCCGCACGTTGCG 210351 29 100.0 32 ............................. GAGGCGCGCACGGAGGCTGTGCCGCTACGTGA 210290 29 100.0 32 ............................. GGTTTCTGAACTACTCATCTGCCATTCGTGAG 210229 29 100.0 32 ............................. ATGCTGGATCAGCCACCACAACCATTTACCGG 210168 29 96.6 32 .............T............... GAGAATACCTTGATCTAACTTTATCGGCAGCA 210107 29 100.0 32 ............................. ATCTGGACTTGCGTTTTGTGAGCAGTCCATAT 210046 29 96.6 32 ............................T CCAACTGGCGTCTTTAAATTACCGTCAAACAG 209985 29 100.0 32 ............................. TTTGCTCAAAAAATTAGGGCAAAGGACTACAG 209924 29 100.0 32 ............................. AGAGCGTTTATATATCGTCATTCACCAAAATC 209863 29 100.0 32 ............................. CGTCCCGGTAAATCTTTCTACGCGCCTGATTG 209802 29 100.0 32 ............................. TCCGGGAGCGTGATTACCTGCCCAGCGGGAAA 209741 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 47 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //