Array 1 48784-47494 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANRF01000021.1 Neisseria meningitidis 63041 NM63041.contig.20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 48783 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 48717 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 48651 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 48585 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 48519 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 48453 36 100.0 30 .................................... ATGCCTTTTTTTGTACTGTTGTTTGAACGA 48387 36 100.0 30 .................................... AAATTCGTTTCAGATAGCAAACGCAGTAGT 48321 36 100.0 30 .................................... GCCGGATATGACGGTGGGCAACTGGTACAG 48255 36 100.0 30 .................................... GCCGGATATGACGGTGGGCAACTGGTACAG 48189 36 100.0 30 .................................... GCCGGATATGACGGTGGGCAACTGGTACAG 48123 36 100.0 30 .................................... ATTTCGCTTTTGTATTGATTCAAGGTGCTT 48057 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 47991 36 100.0 30 .................................... GGGTAGCCAGTGCTAAAACCGCACCCGCTT 47925 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 47859 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 47793 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 47727 36 100.0 30 .................................... CAATAACGGCGAGTTTACGCATCAATGCGG 47661 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 47595 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 47529 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //