Array 1 15774-16821 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMWQ010000010.1 Pseudomonas aeruginosa strain 185374 185374_ctg_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15774 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 15834 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 15894 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 15954 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 16014 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 16074 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 16134 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 16194 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 16254 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 16314 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 16374 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 16434 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 16494 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 16554 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 16614 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 16674 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 16734 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 16794 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 27474-25346 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMWQ010000010.1 Pseudomonas aeruginosa strain 185374 185374_ctg_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 27473 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 27413 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 27353 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 27293 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 27233 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 27173 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 27113 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 27053 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 26993 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 26933 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 26873 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 26813 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 26753 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 26693 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 26633 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 26573 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 26513 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 26453 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 26393 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 26333 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 26273 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 26213 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 26153 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 26093 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 26033 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 25973 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 25913 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 25853 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 25793 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 25733 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 25673 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 25613 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 25553 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 25493 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 25433 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 25373 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 36 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //