Array 1 28555-29742 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVGS01000094.1 Trueperella pyogenes strain UFV1 _contig_11_consensus_0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28555 29 96.6 32 ............................G TTCGGCCATGCCGGGCTTGTAGGTGAGCCGGT 28616 29 100.0 32 ............................. CCCGGACCGTCAGGATTCAGCTCCAAAGCGTG 28677 29 100.0 32 ............................. AAAAATGAATGTTCGTGAGCTTATCGAGCTGT 28738 29 96.6 32 ............................G CAATCACGCCCCGGCGCGGGCCTCAAGATTCC 28799 29 96.6 32 ............................G CTCGAAACCGCTAGGAATCGCGCAGCCTCCAC 28860 29 96.6 32 ............................T CAGGCAGGGCCGTAAGGGTAGCTGCCGGTGGG 28921 29 100.0 32 ............................. GACGCTACGTGCGGTCAACGATTTGCTTACGG 28982 29 96.6 32 ............................G CCCGTATAAAAGCCCAGGGATTGGAAGTATCT 29043 29 100.0 32 ............................. ATCGCGGCCTCGAGCGTGAATGAAGCTGCCGA 29104 29 96.6 32 ............................G CACCCTCAATGAGGGAGCCCAGGAGCGCATCG 29165 29 100.0 32 ............................. CCCCACACCGTGGGGCAAGACCATGAAGGTCA 29226 29 100.0 32 ............................. TGCTCCTAGAAAATGATGGACTGGTCCAGGAT 29287 29 100.0 32 ............................. AGCCACAATCACAATCAAAACGGTCGAGCCAC 29348 29 100.0 32 ............................. GACGTCGCCGCCCTCAAACTCACGCACTCCGT 29409 29 100.0 32 ............................. TGAAAAGCCGTACCTAAGGCCCATACGGAAAC 29470 29 96.6 32 ............................G CCGTAACAAAGTTGATAACTTCCATATCTGAG 29531 29 100.0 32 ............................. AGGTTGCGGATCTTGGAAAGGCCGGAGGATAC 29592 29 96.6 32 ............................G ACCACAAAAAGAAAACTGATGAGCGCCTCGCC 29653 29 100.0 32 ............................. TGACGCCCTCGTTCACGGGGCAAATGGTGACA 29714 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : CCGCGGTACCTGCAGGTCTGCGGGGCGACCTCACGAAATGGCTTATGGAGATCGCACCAGGAGTGTTTGTGGGGACTCCAAGCGCGCGGATACGGGAGCAGATCTGGGCACGCACCGTCGCACTTTGTAAAGACGGCCGGGCAATCATGGTTTGCTCCGCGGATAACGAGCAGGGAATGACGTTTCGAACCCATCGACACGATTGGGAACCCGCAGACTTTGATGGTTTGACCTTAATGATTCGGCCAGGTGGTGGACAGAATTCTCAGAACAATCAGCGAAGAACGGGATGGTCGGACGCTAGGCATCTACGCAAAAAGTATTGATAACGATTGAACTGTTTGGGTGTCCAGATTTTTGATAGTTCGAGAATTGTAGATTACACGCGATGGTAGTGGATAGAGTGGATCCTGAGATATCCATTGGGCCATCCTCAGGTAGGGCGCAATAAGTTAAATGTATAATCGAAGTGCTGGCGGCAGAAATGCTGGTCAGCAAGT # Right flank : | # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2-824 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVGS01000095.1 Trueperella pyogenes strain UFV1 _contig_4_consensus_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2 29 96.6 32 ............................G GAAATTGGGCAGGCGCATGGAATGCGTTTAAG 63 29 100.0 32 ............................. GTGCGCACACCAGCCCTCCCTCAATGGGCACG 124 29 93.1 32 .........A..................G CGTACGCCACGGTGGAGGGCGACGCCTGCTTC 185 29 96.6 32 ............................T CGTGTGCTTGATAAGAAGCAGTTATCTGAGGA 246 29 100.0 32 ............................. AGCTTCCGCGGTCGTGATCGTGTTAATAAAGC 307 29 100.0 32 ............................. GAGTTACAGGAGGAGCGGGAGAAAGCGAACGC 368 29 100.0 32 ............................. AGCTTCCGCGGTCGTGATCGTGTTAATAAAGC 429 29 100.0 32 ............................. GAGTTACAGGAGGAGCGGGAGAAAGCGAACGC 490 29 100.0 32 ............................. CTGGAAGACGCCGACCTGTGGGGTGCTGACCT 551 29 96.6 32 ............................T AACCACTGGTGCTGCGAGCCTGGCCAAGCCTC 612 29 100.0 32 ............................. CTGGAAGACGCCGACCTGTGGGGTGCTGACCT 673 29 96.6 32 ............................T AACCACTGGTGCTGCGAGCCTGGCCAAGCCTC 734 29 96.6 32 ............................G ATTTTGATCTGGCTAACGAGCTTTTGCACAGA 795 29 93.1 0 ..........................T.A | C [820] ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.8 32 GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : GG # Right flank : AGTGACGGTTGGAAAGTAGCCCAGTAGTTGCGTCGTTGATTTTGAGAATCACGCGCAAAATGCGAAACTGCACTTCTTCTAAAACCTGCAAACTCGTACACGGCGTCGCGTCCTCCTCGGGTGCCCTCACAATCGCCAGGCGCCAAATCAAGTAGGCCATTGTCAGCTACTAGGAATCTGACAAACGAGAATCAATATCCATATGACGCTGGAGAATTCGTACGACTACCACGGCGTCGTCTTCGCACCGATAGAAGATAACGTGTTGACTGCCTGTCAGGCTGCGGCACGCTGATTCAAGTTCTTTGCGGAGGCGGTCGCGCAGAGGAAAATCTGTCAAGCTCTCTAAGCTAGTCTGGAGTTCTCGCAGATACAGCTCCGCCTGGCGGGGTCCCCATTTTCTTCCGTATGATCCCTGATATTTGACAGATCAACCTTGGCTAGTGGTGAGAAAGCGAGTTTCACTGGTGCTGCTTTTCTATGATGAATTGGTCAAAGTC # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //