Array 1 7-1437 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKB01000042.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N48678 N48678_contig_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 68 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 129 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 190 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 251 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 312 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 373 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 434 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 495 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 556 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 617 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 678 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 739 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 800 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 861 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 922 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 983 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 1044 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 1105 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 1166 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 1227 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 1288 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 1349 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 1410 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTAGTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 161111-160593 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKB01000007.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N48678 N48678_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 161110 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 161049 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 160988 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 160927 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 160866 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 160805 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 160744 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 160683 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 160622 29 96.6 0 ............T................ | A [160595] ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //