Array 1 283349-280819 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSUT01000001.1 Ligilactobacillus salivarius strain FSDLZ20M1_2 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 283348 36 88.9 40 AGA..........T...................... GGAGTGATGCAAATGGAAGCTACATACATAGCTTATGACG A [283342] 283271 36 97.2 39 .............T...................... GTAAGACAAGACCTTACTTGGTTATGAGTGCAGAAACAG 283196 36 97.2 39 .............T...................... TGTTCTACCCAGCTTTCATTATATCTCAAAAACGATGAA 283121 36 97.2 39 .............T...................... ACTTGGTACGTTGATTGAGAAAGCGTTGAGAGAATACTT 283046 36 97.2 39 .............T...................... AAGGTGGGATAACATTTATTGGTTAAACTCCAAAGTTTA 282971 36 100.0 33 .................................... ATCGAAAACGAGGCTAATAAGTAATGTTTGGAA 282902 36 100.0 36 .................................... TAGAACTCAGCGAAAAAGGGTCAACCATGAAAACTA 282830 36 100.0 41 .................................... ACAAAGTTTTACTCCAGACTCTGTTGCAAACTTACTCAACG 282753 36 100.0 38 .................................... TTTAGAACGTGATTTAAAAGATAACTTTACAATTTCAC 282679 36 100.0 40 .................................... GTTCAAAGCGAATTTGATAGGCTATCAGATATCAAACGTT 282603 36 100.0 37 .................................... ATAAAATTGCAAAGAAAATTGTTAAAGAAGTAGGAAA 282530 36 100.0 41 .................................... CTGTAGGAATGGGAATGAACCGAGATCATGTAGACCATACA 282453 36 100.0 38 .................................... GGAAATGAATTTGAACGGAGAATTGGTAAACTTTTTCA 282379 36 100.0 38 .................................... AACAGTGAATTTTTCACTCTCTCTCGAATTATTTTCTC 282305 36 100.0 44 .................................... TTCATTGATATGTTGGTTAAAAATAATGATGGAACGTTTGATAT 282225 36 100.0 44 .................................... TTCATTGATATGTTGGTTAAAAATAATGATGGAACGTTTGATAT 282145 36 97.2 38 .................G.................. GACAGTGAATTTTTCACTCTCTCTCGCATTATTTTCTC 282071 36 100.0 39 .................................... GAAGAATTGAAATTCAATTCTAATCTATTCTATGAGAGG 281996 36 100.0 41 .................................... TTTAAAGAAAATTTGGGCTATGGCTAAAGCTGGACGTAAAA 281919 36 100.0 39 .................................... AGAAACCTAAGGAGGACAAATAATGCAAAGTGAAAATTC 281844 36 100.0 41 .................................... TTAAGTTATTACTTAAATGTACCTTATAAGGTACAGATCTT 281767 36 100.0 42 .................................... GGAAAACGCCACGATAACGTTTTGAGGGATATTGAAAATTTA 281689 36 100.0 38 .................................... TTGACCTATTCTTTGATGTAACTGATTGCTTAGAAGAT 281615 36 100.0 39 .................................... AATTGAGCGTATAACCTTCTTATGTTCTTTCCCAAATGC 281540 36 100.0 39 .................................... AGAAAGTAGAGGAGAAATAAAATGAGTTTTGGATTTACA 281465 36 100.0 40 .................................... AATGAATTTGAACGGAGAATTAGTAGATTTCTTTAAAGTT 281389 36 100.0 42 .................................... GGAAAACGCCACGATAACGTTTTGAGGGATATTGAGAATTTA 281311 36 100.0 39 .................................... ACCTTATCCGACGCAAGAGCAGCTTAAGCAATCCTTAGT 281236 36 97.2 39 ...G................................ ACCTTATCCAACGCAAGAGCAGCTTAAGCAATCCTTAGT 281161 36 100.0 42 .................................... GGAAAACGCCACGATAACGTTTTGAGGGATATTGAGAATTTA 281083 36 100.0 39 .................................... ACCTTATCCAACGCGAGAGCATCTTAAGCGATCCTTAGT 281008 36 97.2 41 .......A............................ GGTATCGTACTTGAGGTAAAGGGTATCAAGTGGACAAAACG 280931 36 94.4 41 .G..G............................... GGTATCGTACTTGAGGTAAAGGGTATCAAGTGGACAAAACG 280854 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 34 36 98.9 40 GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Left flank : TCATTTGAAGAATGACTAGGAGTTACGACTTGGTAAGCCTTAACATTGATATCTTTCAATCTATTAATAGTAAATAGCGCTGACTTCATTTGTGGCGTACCGCTAGACAAATTCAAAATTAGATCTTCATCTTCTTTAGAATATTTTGAAATTATTCCATTTAGTACTTCATACATTTTATCAAAAATAAATACTTCACTATCAGAAATGACTTCATCACTTTTTTCGATCATAGGATTATATCCATCTATAGAATTCAATGCTAACAAAATATTAGTCTCTTTTGATAAAGCACGCTCAGAATATATTAATAATATTTTTTGGGGACGAAATACCCTTACTAAATGTAATAAAGCTCCATCGTGTCTATTTCTTATAGGATCTGTATCACCAATACACGATATTAATGTTGTCATAATTACACCACTTTCTAATTAGTTATCTATATTATATATTATTTTTTCTAATTTTCGCTTTCTCTTGTCTACTTTAATTAAATT # Right flank : ATTCCTTGATCAATTAGTTGATACATCAACAACTATTGACATTTTTAATGGTACCCTAAACGGGCAATAGGTTAACTTAATAAGTATTATTTGGTCAAAATTCAGACAAGTTTTTATTTGTACTACTATTTCTTCCAATAGTGTAAGTGTATTATAACACAATAAATTGAGGTTTCCTAACAGTTTTCTTTATAGACTCACTTCCTAAAATCGTTATTTGTGAATCATTCACTTCGTTAGGAAGTAAATATAAAGTAATTACACCTGATTTAGGTAATCTATCTTTTAACACTTTAATTACTCTATCTCTAGTAGAATTTTGTCTTACTTCTCTTTCATACACACTAAATTGCTTCATTGTGAAACCTAATTCTACTAATTTCTTATGATATTTAGCTGCTTCTTTTCTATTCTCTTTCGTGTCTCTTGGTAAATCAAAACATACTAATAGCATCATACCTATCTTCCTTCCTCAATGAAAGTCGGTAATTTCAATCCTG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 48679-47347 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSUT01000007.1 Ligilactobacillus salivarius strain FSDLZ20M1_2 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================== ================== 48678 36 100.0 30 .................................... TTGTTGCAGGAAGTACAGTGTCTTTCTTCA 48612 36 100.0 9 .................................... AGTCCTTAC Deletion [48568] 48567 36 97.2 9 ....A............................... AGTCCTTAC T [48561] Deletion [48523] 48521 36 97.2 9 ....A............................... AGTCCTTAC T [48515] Deletion [48477] 48475 36 97.2 9 ....A............................... AGTCCTTAC T [48469] Deletion [48431] 48429 36 97.2 30 ....A............................... AGTCCTTACGTTTAATGAAACAAGCTGAGA T [48423] 48362 36 100.0 30 .................................... ACTATTTTTAGGTGTATTTCAATACCTTTT 48296 36 100.0 30 .................................... TTGGTTCAGTACAAGCACTGCCGCTTACAA 48230 36 100.0 32 .................................... TCACAATAAATCTTTAATGAAACAAGCTGAGA 48162 36 100.0 30 .................................... TTACTTCAGTACAAGCACTGCCGCTTACAA 48096 36 97.2 30 ...G................................ TTACTTCAGTACAAGCACTGCCGCTTACAA 48030 36 97.2 30 ...G................................ TCTCAATAAATCTTTAATGCGAATATTCAT 47964 36 100.0 30 .................................... AAATGCGTTTGAAGAAGAGCAAAACCGCCA 47898 36 100.0 30 .................................... TTTTAACCCTAGGCGGTATCTTAAGCATAA 47832 36 100.0 30 .................................... ATTGATTTAGCAGTGAATTTCTGATCAGAA 47766 36 100.0 30 .................................... CTAGGGATTATGCTAGGGAGCAAATAACTT 47700 36 100.0 30 .................................... TTGATAAGCGAACCATTTATCGCCTTTCTT 47634 36 100.0 30 .................................... CATTTTTTGCGAAAAAAGTAACAATTATTG 47568 36 97.2 84 ..................................T. TACTTTCTTTTATGATATAATTTAGGCATAATTTCAGAAGTATATTAAAGATCTTTAGGACTTGGAAAGTCACAGGAGGATTAA 47448 36 91.7 30 ..........C.............A..........T GATCTACGTTACATTTTCTTAATGTTCATA 47382 36 77.8 0 ......T...A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ==================================================================================== ================== 21 36 97.6 29 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCAAATTAGCAAAAAATATATGAATGTATTGATCAAGAAGATTATTGAAGACATCACAGATGTTGAAAGACAAGCAATACTAAAATCAGTAAATGGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCTTTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTACATGTGGAACTAAACAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAAATCTTGTTAAGGCGACTAACGCATCAATGTTTATAATTGAATTCACAGAAAAGAATGATCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAATAACG # Right flank : TAAAATACAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTACGATATATTATGGTTGATAATACAATATTATATGGTATATAATATAGTTGAAGATAAGATATAGAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTATTAGATGGTTTAGTATTAGCGTTATTAGATAAGCAAGATTATTATGGATACTCATTGACACAAGATATGCAAAGGGCAATTTCGATTTCAGAATCAACATTGTATCCGGTATTGAGAAGATTGAAGAAGGGTGGTTTATTAGAGACATATGATCAATCGTATCAAGGGAGAAATCGTAGATATTATCGCATAACAGATAATGGGGAAGTACACTTAGAAAGAATAAAAAAAATGTGGAATGACTATAAAGTTAGTTTGGATGAAATTTTTGAAAAAACTAGGGAGGGGGAATAATAATGAACTCAG # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.58, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //