Array 1 1-210 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952052.1 Actinomyces johnsonii F0542 Scaffold708, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 27 93.1 32 --........................... GTCAACGCGGCCGCCGCTCACCTGAGCACGCT 60 29 96.6 32 ............................C CGGGCCACACGGCCCACACGAAAGGAATCACG 121 29 100.0 32 ............................. TCTCGAACCTCTGCTACGGCTGGCACGAGGCA 182 29 89.7 0 ..........................NNN | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 GTAAACCCCGCGCGAGCGGGGATGATCCG # Left flank : | # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCCGCGCGAGCGGGGATGATCCGCACCCCGGCATGACTCTCGAGTGCGAGGGCCACGTAAACCCCGCGCGAGCGGGGATGATCCGAATGAGGCCATCGCCGACCTGATGGACCTCCTGTAAACCCCGCGCGAGCGGGGATGATCCGACGACACGGTCACTGATTGCGACTTTTGTTGAGTAAACCCCGCGCGAGCGGGGATGATCCGGTTGGGGCTGACCTGCTGTGGAGCAGCCTACAGTAAACCCCGCGCGAGCGGGGATGATCCCCCTGTCAGCCTGCTGCTGGTTCCAGGTCGTGAGTAAACCCCGCGCGAGCGGGGATGATCCCCGGGCCGGGGACAGCCTCACCGTACTGGTCGCGTAAACCCCGCGCGAGCGGGGATGATCCCGACTACGTA # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 367-761 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952052.1 Actinomyces johnsonii F0542 Scaffold708, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 367 29 96.6 32 ............................G AATGAGGCCATCGCCGACCTGATGGACCTCCT 428 29 96.6 32 ............................G ACGACACGGTCACTGATTGCGACTTTTGTTGA 489 29 96.6 32 ............................G GTTGGGGCTGACCTGCTGTGGAGCAGCCTACA 550 29 100.0 32 ............................. CCTGTCAGCCTGCTGCTGGTTCCAGGTCGTGA 611 29 100.0 32 ............................. CGGGCCGGGGACAGCCTCACCGTACTGGTCGC 672 29 100.0 32 ............................. GACTACGTATCTCCCGTTTTGTCGGCCGTCTG 733 29 93.1 0 ...........................NN | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.6 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : AAACCCCGCGCGAGCGGGGATGATCCGGTCAACGCGGCCGCCGCTCACCTGAGCACGCTGTAAACCCCGCGCGAGCGGGGATGATCCCCGGGCCACACGGCCCACACGAAAGGAATCACGGTAAACCCCGCGCGAGCGGGGATGATCCGTCTCGAACCTCTGCTACGGCTGGCACGAGGCAGTAAACCCCGCGCGAGCGGGGATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCCGCGCGAGCGGGGATGATCCGCACCCCGGCATGACTCTCGAGTGCGAGGGCCACG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCCGCGCGAGCGGGGATGATCCCGATCACCCTCTACCGGACCTTCAGGCCCGGGCGTAAACCCCGCGCGAGCGGGGATGATCCGGTCTGCGACCTGCATAAGTGCGATCTGCGCAGGTAAACCCCGCGCGAGCGGGGATGATCCCGATGACCAAGCATCACGACGACATCACGGACCGTAAACCCCGCGCGAGCGGGGATGATCCGGTCGACTGGCGCGAGCTCGCTGCCGAGACACGCGTAAACCCCGCGTGAGCGGGGATGATCCCTCGAGCGCCCCGGTGGGTAGTGCCCCGTAGTGTGGTGTAGCGCGGTGGCCGGGGCGATCTTGGTGCCGGAGTCGGACAGGACCCGGCAGATCGGCCAGGCCCCGAAGCGCTCCTTGTGCCGGTCGATGTAC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 917-1129 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952052.1 Actinomyces johnsonii F0542 Scaffold708, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 917 29 100.0 32 ............................. GTCTGCGACCTGCATAAGTGCGATCTGCGCAG 978 29 96.6 32 ............................C GATGACCAAGCATCACGACGACATCACGGACC 1039 29 100.0 33 ............................. GTCGACTGGCGCGAGCTCGCTGCCGAGACACGC 1101 29 93.1 0 ............T...............C | ========== ====== ====== ====== ============================= ================================= ================== 4 29 97.4 33 GTAAACCCCGCGCGAGCGGGGATGATCCG # Left flank : ATGGACCTCCTGTAAACCCCGCGCGAGCGGGGATGATCCGACGACACGGTCACTGATTGCGACTTTTGTTGAGTAAACCCCGCGCGAGCGGGGATGATCCGGTTGGGGCTGACCTGCTGTGGAGCAGCCTACAGTAAACCCCGCGCGAGCGGGGATGATCCCCCTGTCAGCCTGCTGCTGGTTCCAGGTCGTGAGTAAACCCCGCGCGAGCGGGGATGATCCCCGGGCCGGGGACAGCCTCACCGTACTGGTCGCGTAAACCCCGCGCGAGCGGGGATGATCCCGACTACGTATCTCCCGTTTTGTCGGCCGTCTGGTAAACCCCGCGCGAGCGGGGATGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCCGCGCGAGCGGGGATGATCCCGATCACCCTCTACCGGACCTTCAGGCCCGGGC # Right flank : CTCGAGCGCCCCGGTGGGTAGTGCCCCGTAGTGTGGTGTAGCGCGGTGGCCGGGGCGATCTTGGTGCCGGAGTCGGACAGGACCCGGCAGATCGGCCAGGCCCCGAAGCGCTCCTTGTGCCGGTCGATGTACTGGCAGATCAACGCAACGGGCGCTCGCACTCCGCTGCCCCAGAGACGAGGCCGTTTCACGGGGGAGGTCGCTCGCACCTGACTAGGACACGCCAAGGCGGTTGCTTTACGAATATATCTGGGATAGGGCAAACTAATGCCGCTGTTCGACACCAGGGCAAGGTCGAGCAACGGCGCCTCCCGTCCCCGCGGGGCCGTCTTTCCAATATCCCTAGCCGTCACGCGCCGGACCCTCGACAAGGTGGTTCGAGTCGCTCTGCGCGCGGTCCCCTCCCTGGATGGGGTTTGTGTCGGCCGCCTGACTTGAGGAGTTAGGACGATGAGTGTCAGAAGTGCCGCAGAGGCCATCTTCTCCCCACCGGTTCAGAA # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 33977-33461 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952050.1 Actinomyces johnsonii F0542 Scaffold697, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 33976 28 100.0 33 ............................ CTCCACATAAAGACGGGCGCAGCAGTCCACGGA 33915 28 100.0 33 ............................ GTGGTGGTTCGCTAACTTTGGATCAAATGTATA 33854 28 100.0 33 ............................ GCCGGACCTGGACAAACTTCAGCGCGCCGTCGG 33793 28 100.0 33 ............................ GGCACGCTCCGCCTCGCTAGCCCTGGGGGTGCC 33732 28 100.0 33 ............................ GGCGCCCGACTCCTCACCCAAGCCGGATACCCC 33671 28 100.0 33 ............................ GTAGAGGGTGACGATTTTCGCCCACGGGTGGTT 33610 28 100.0 33 ............................ CGAGATGCGGGCCGTGATCCTCGGGGACAAGCA 33549 28 100.0 33 ............................ CTGCTCAACCAGATCCGGCCGACCGCTCAGGTC 33488 28 92.9 0 .......................CC... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 99.2 33 GTCAGCCCCGCGCACGCGGGGGTAGAGG # Left flank : GGGCGGGCTGGATGCTGCCACTCATCGGTGGGCTGGGCCGCCGCCACCTGCCCGTCCTGCGGGGGATGCTCGTGGCCGGGGGGCCTCGGCCTCCCTGCGTGGGACTCGCGGTGAGAACGGGGGTGGTTGAGGCCAGACTCGCCGAGACCAGGACATTGGCTTCCCTGCCGCGAGTTCTGCGGGCCGCCACGGCTCCTTTGTCGCAATGGACCACCGTTGTGCCGACGGCGGAGGATCCTGAAGGCATCATGCGCATGCTGAAGAAATGCGCCTCGGGGCTCGGCTGCGGACTCGTTGAGGTTGAGCGGCACTCCGAGTCGCGAAGCGACGGAGGCATTGATGTGCAGGAGGACAACGGGCGCTGGCACGTCTCGGTCGCCTTCGACGCGGTGGTGCCCGGGCCGGTTGTCTTCGACGGCGCTCTCATGGTTCCCCTGGGGGCCACCACCTTGGCGGTGAACCCACGGCGACCCCGAGCCGACTAACATCGCAGGTTAGCC # Right flank : CACAGACGTGCGGCTTGCGCTGTGCTGGGCCAGGATGCCTATTGCACGAGGGTGGGGTTGTACTGGCCAGGGGCGGCCGGGGTTGATCGAGAACGTACTTCTTCCGCGAGAACTGCGTTATCCCGCGAACGACTGGGGGCAGACCCCAGTGGTCTGCGGGAAAAGTACGTTCCCGAGGGGAATCGCAGTTCCCGATGCGGGAGCGCTGATCCCTGCGCCGTCGGAACGGTCGCCCGCCGCCCCGCCGTGCCGGTCTACTTGGTGGGGGTGCGGCCCAGGGTTAGGTAGCCGGGGAGCGTCTGGTCCTGGCCGGCGCTGGAGAACCGCAGTGGCTGGCCCGATTCCAGTGGGTTGACCACGCGCACCAGGATCGTATTCTCACCCGCCGGGTCCTCCGGGAGCTGGCCGGAGAAGGTCTGGGTCTTGCCGACCTCGATCTTGCGCAGATCGCCACTGAGCGTGGTGCGCCCGACCTCCACACCGGTCTGGCTGTTGACGGC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCCCCGCGCACGCGGGGGTAGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 9255-8635 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952093.1 Actinomyces johnsonii F0542 Scaffold92, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 9254 37 100.0 36 ..................................... TGCTGCAGTAGTCTTATTCATCATACTGCGTTTCTT 9181 37 94.6 36 .............................C..T.... AGGACACCATCAACCGTCGCGCCATGGCCGGTCTTG 9108 37 100.0 36 ..................................... TGCTGCAGTAGTCTTATTCATCATACTGCGTTTCTT 9035 37 97.3 32 .............................C....... TGAAATGGGGTTCACCGATGTCTTTGCCGAAA 8966 37 97.3 37 .............................C....... GAGAAGGAGTGGACCATGGCCTTCAAGAAAGCGAGAC 8892 37 97.3 37 .............................C....... AAAGAGATGGCTGGGTACTCCCGGGTGCGAACTGACA 8818 37 100.0 38 ..................................... ACCGATGTGGAGAATATTAAAGAGTCCTGGGGGATGTT 8743 37 94.6 35 .......................A...........C. CCGAGGGTGTCGGTGTGGCTGGAGGCGGTGCGTGA 8671 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 97.9 36 GTCTTAATGCACCTTCTGGTGCTGGGTGCTTTCTGAC # Left flank : GCACCTTCTGGTGCTGGGTGCTTTCTGACTTTTGTGGTCATGCTGGCGATTCCATTCTTTGCTT # Right flank : CCCTGCCTCTGGGAACGGCGTCGTTGCGCCACTTCCGGGTGCAGGAGCGCCACCGGCTCCGCAAGCACCCCGCGGGACCGGACAGCACCGCCCCTATTTAACCACCTTTCGGCGTCCTGACGCCAAGCGCCACCAACGCCCCTCAGGCACCTCCAGCCACCAACTTCTAACGACGTCAAGCCAAAAGATCGACGTTCCCGCCCGTGACTGCTGACACAACGTGCTTCCGTGGCTCGACCGGCGCGCCGCTGGGCCTCGTCCTCTCCGCTTCCTCCTGGCCCTCGATGCTGAAGAACGTCGACCTCTTGAACTCCCCGTACAGGCCGCCTCCCCTCCGGTAGTGTCGCCAGAAAGAAAGAGGTAGATGGCCTTGCGCCGGCCTCCCGCCACCAGCTGGCGCCGCCGTCGGCCTCCCCTGCCGCACCCACCACACATCACGCCGCAAAGGAGCCCCGTCGAGTGCCCGCCACCGTATTCGTCCGCTTCGATGCGCCCGGCCC # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATGCACCTTCTGGTGCTGGGTGCTTTCTGAC # Alternate repeat : GTCTTAATGCACCTTCTGGTGCTGGGTGCCTTCTGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 516-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952072.1 Actinomyces johnsonii F0542 Scaffold786, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 515 29 96.6 32 N............................ GGTACGGACTTCGATTCCCGCCGGAAGATTTT 454 29 96.6 32 ............................T ACACCGTCATTCAGGCACGCGTGGTGTACGGC 393 29 100.0 32 ............................. GCCGCGTTGAAGAGTGAGGCATTGGTTTCGCG 332 29 96.6 32 .................A........... CTCTTTTCCGTCGTCTTGCACTATGAACTTTT 271 29 96.6 32 ............................T GGACGCACTGTTAGAGAGCATAAAGACGACGG 210 29 93.1 32 ....................T.......T GGGAGGAACGATGGGTTTTCTTGATGACGTAG 149 29 96.6 32 ............................C CCATTGCACTGTGAAGAATTTATTATCCTCAC 88 29 100.0 33 ............................. CGATCTGTGCGGCACTGGGCATACCAGACCCGC 26 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================= ================== 9 29 96.2 32 GTAAACCCCGCGCGAGCGGGGATGATCCG # Left flank : TTGCTTCAGGTAAACCCCGCGCGAGCGGGGATGATCCGGGAGCGCTCCACCTCGTCCAGCGTCCACGTCAGTAAACCCCGCGCGAGCGGGGATGATCCGCCCACTGAGGATGGTAACTACATTGAAGCTCCGTAAACCCCGCGCGAGCGGGGATGATCCGCCCACTGAGGATGGTAACTACATTGAAGCTCCGTAAACCCCGCGCGAGCGGGGATGATCCCAGCGCTGCGTTCAATTCTCAGTCCAACCATGGGTAAACCCCGCGCGAGCGGGGATGATCCCTGCTCAACCAGGTCCGGCCGAGTCGTCAGGTCGTAAACCCCGCGCGAGCGGGGATGATCCGCAGCTCGTCTCTTGCGTCTTGCTCGTGCGGCGGTAAACCCCGCGCGAGCGGGGATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : T # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1555-612 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952072.1 Actinomyces johnsonii F0542 Scaffold786, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1554 29 93.1 31 NN........................... TTCTATTCGATTACGATTATTTCCCGGAACA 1494 29 96.6 32 ............................C CGAACGTTGCCGTAGCCCAGATTTCCGGTAAG 1433 29 100.0 32 ............................. GGAGCGCTCCACCTCGTCCAGCGTCCACGTCA 1372 29 100.0 32 ............................. GGAGCGCTCCACCTCGTCCAGCGTCCACGTCA 1311 29 100.0 32 ............................. CCCACTGAGGATGGTAACTACATTGAAGCTCC 1250 29 100.0 32 ............................. CACGCGAGCGAATATGCGGGCGTGGCGTCATC 1189 29 96.6 32 ............................C AGCGCTGCGTTCAATTCTCAGTCCAACCATGG 1128 29 100.0 32 ............................. CCCACTGAGGATGGTAACTACATTGAAGCTCC 1067 29 100.0 32 ............................. GCGGCCGACCTGCGGCCGCCCAGTTGCTTCAG 1006 29 100.0 32 ............................. GGAGCGCTCCACCTCGTCCAGCGTCCACGTCA 945 29 100.0 32 ............................. CCCACTGAGGATGGTAACTACATTGAAGCTCC 884 29 100.0 32 ............................. CCCACTGAGGATGGTAACTACATTGAAGCTCC 823 29 96.6 32 ............................C AGCGCTGCGTTCAATTCTCAGTCCAACCATGG 762 29 96.6 32 ............................C TGCTCAACCAGGTCCGGCCGAGTCGTCAGGTC 701 29 100.0 32 ............................. CAGCTCGTCTCTTGCGTCTTGCTCGTGCGGCG 640 29 89.7 0 ..........................NNN | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.1 32 GTAAACCCCGCGCGAGCGGGGATGATCCG # Left flank : TGTCGAAAGCGTAAACCCCGCGCGAGCGGGGATGATCCTGGGATTCAGTCGGCCATCCAAACAGTGGTCGGGTAAACCCCGCGCGAGCGGGGATGATCCTGCGCCCGCTGAGTCGCCCGACCCGACTATCACGTAAACCCCGCGCGAGCGGGGATGATCCGCCGTCCCCGGCGCGGGCGCGCAGCTCCTCGGCGTAAACCCCGCGCGAGCGGGGATGATCCCTTGACGATTTCGAGGCATTCCTGAATGACTCCGTAAACCCCGCGCGAGCGGGGATGATCCCAGCAGGTCCCCGGGCTGGGCCTGGTCCACGGGGTAAACCCCGCGCGAGCGGGGATGATCCCTGTGATCTTTGATGAATTCATTATCGAAAACCGTAAACCCCGCGCGAGCGGGGATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAACCCCGCGCGAGCGGGGATGATCCGGGTACGGACTTCGATTCCCGCCGGAAGATTTTGTAAACCCCGCGCGAGCGGGGATGATCCTACACCGTCATTCAGGCACGCGTGGTGTACGGCGTAAACCCCGCGCGAGCGGGGATGATCCGGCCGCGTTGAAGAGTGAGGCATTGGTTTCGCGGTAAACCCCGCGCGAGCAGGGATGATCCGCTCTTTTCCGTCGTCTTGCACTATGAACTTTTGTAAACCCCGCGCGAGCGGGGATGATCCTGGACGCACTGTTAGAGAGCATAAAGACGACGGGTAAACCCCGCGCGAGCGGGTATGATCCTGGGAGGAACGATGGGTTTTCTTGATGACGTAGGTAAACCCCGCGCGAGCGGGGATGATCCCCCATTGCAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2593-1650 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952072.1 Actinomyces johnsonii F0542 Scaffold786, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================== ================== 2592 29 96.6 32 ............................G CGGGCTACCCCACGCGGGCGGCCACCATCCGG 2531 29 96.6 32 ............................G CCCTTCTCGACGTCGCGAGCGATCTGCTTCAG 2470 29 75.9 91 ......................NNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 2350 29 93.1 32 NN........................... GGTGTGGAATACGGAGTCTGAGGTGGCTGTAA 2289 29 100.0 32 ............................. GCCGTAGGACTCACTGTAACCAGCGGTGAGCG 2228 29 96.6 32 ............................G CCCACTGAGGATGGTAACTACATTGAAGCTCC 2167 29 100.0 33 ............................. GCGGCCGCCCGCGGCGGCGCGGGAGACCGAGTG 2105 29 93.1 32 T...........................G TCGCAATCAAGGCAATTGGCACTGTCGAAAGC 2044 29 96.6 32 ............................T GGGATTCAGTCGGCCATCCAAACAGTGGTCGG 1983 29 96.6 32 ............................T GCGCCCGCTGAGTCGCCCGACCCGACTATCAC 1922 29 96.6 32 ............................G CCGTCCCCGGCGCGGGCGCGCAGCTCCTCGGC 1861 29 100.0 32 ............................. TTGACGATTTCGAGGCATTCCTGAATGACTCC 1800 29 100.0 32 ............................. AGCAGGTCCCCGGGCTGGGCCTGGTCCACGGG 1739 29 100.0 32 ............................. TGTGATCTTTGATGAATTCATTATCGAAAACC 1678 29 89.7 0 ..........................NNN | ========== ====== ====== ====== ============================= =========================================================================================== ================== 15 29 95.4 36 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : NNNNNNNNNNNNAAACCCCGCGCGAGCGGGGATGATCCTGGGCGGCCGAATGGATCAATGCCAAGTACGGGGTAAACCCCGCGCGAGCGGGGATGATCCCAGCGTCATCTCAAGGTAACGGTGATCGATCTCGTAAACCCCGCGCGAGCGGGGATGATCCTAACCACAACCGATGGATACTGCCGCAGAACAGGTAAACCCCGCGCGAGCGGGGATGATCCGACGGCCTTGAGATTTCAGCTACGAACGACTGGGTAAACCCCGCGCGAGCGGGGATGATCCCCCCCTGGAGGCGAGCATCGAGCACCAGGCGCAGTAAACCCCGCGCGAGCGGGGATGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCCGCGCGAGCGGGGATGATCCGGGGCTCCCCAAGCCGGGCCTCCCGTACTGGTC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACCCCGCGCGAGCGGGGATGATCCGTTCTATTCGATTACGATTATTTCCCGGAACAGTAAACCCCGCGCGAGCGGGGATGATCCCCGAACGTTGCCGTAGCCCAGATTTCCGGTAAGGTAAACCCCGCGCGAGCGGGGATGATCCGGGAGCGCTCCACCTCGTCCAGCGTCCACGTCAGTAAACCCCGCGCGAGCGGGGATGATCCGGGAGCGCTCCACCTCGTCCAGCGTCCACGTCAGTAAACCCCGCGCGAGCGGGGATGATCCGCCCACTGAGGATGGTAACTACATTGAAGCTCCGTAAACCCCGCGCGAGCGGGGATGATCCGCACGCGAGCGAATATGCGGGCGTGGCGTCATCGTAAACCCCGCGCGAGCGGGGATGATCCCAGCGCTGCGTT # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.32, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3022-2749 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952072.1 Actinomyces johnsonii F0542 Scaffold786, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3021 29 100.0 32 ............................. AGCGTCATCTCAAGGTAACGGTGATCGATCTC 2960 29 96.6 32 ............................T AACCACAACCGATGGATACTGCCGCAGAACAG 2899 29 96.6 32 ............................G ACGGCCTTGAGATTTCAGCTACGAACGACTGG 2838 29 100.0 32 ............................. CCCCTGGAGGCGAGCATCGAGCACCAGGCGCA 2777 29 93.1 0 ...........................NN | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : AGAGAGTGTAAACCCCGCGCGAGCGGGGATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAACCCCGCGCGAGCGGGGATGATCCTCATCCTGCGCGGCGGGGCCGCCGCCCCCGTTCGTAAACCCCGCGCGAGCGGGGATGATCCCAGCGCTGCGTTCAATTCTCAGTCCAACCATGGGTAAACCCCGCGCGAGCGGGGATGATCCCGGTTGCGCACGACGTTTGTGAACTACACAGAGGTAAACCCCGCGCGAGCGGGGATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACCCCGCGCGAGCGGGGATGATCCTGGGCGGCCGAATGGATCAATGCCAAGTACGGG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCCGCGCGAGCGGGGATGATCCGGGGCTCCCCAAGCCGGGCCTCCCGTACTGGTCGTAAACCCCGCGCGAGCGGGGATGATCCGCGGGCTACCCCACGCGGGCGGCCACCATCCGGGTAAACCCCGCGCGAGCGGGGATGATCCGCCCTTCTCGACGTCGCGAGCGATCTGCTTCAGGTAAACCCCGCGCGAGCGGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACCCCGCGCGAGCGGGGATGATCCCGGTGTGGAATACGGAGTCTGAGGTGGCTGTAAGTAAACCCCGCGCGAGCGGGGATGATCCCGCCGTAGGACTC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 3390-3239 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952072.1 Actinomyces johnsonii F0542 Scaffold786, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3389 29 93.1 32 N...........................T CATCCTGCGCGGCGGGGCCGCCGCCCCCGTTC 3328 29 100.0 32 ............................. AGCGCTGCGTTCAATTCTCAGTCCAACCATGG 3267 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : CATGTAAACCCCGCGCGAGCGGGGATGATCCGGTCGCTCAGCGGCATGTCCGCTAGGTCGTCGTCGTAAACCCCGCGCGAGCGGGGATGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAAACCCCGCGCGAGCGGGGATGATCCGATTTTGACGGCGGTGGGGAAGCAGGCGCAGGCGTAAACCCCGCGCGAGCGGGGATGATCCGCTGCGGCCCTTGCCATTCCCCATCGTCGACGCGTAAACCCCGCGCGAGCGGGGATGATCCGCAGCCGCCCAGTGGCATCGACCTCGAGAGAGTGTAAACCCCGCGCGAGCGGGGATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GGTTGCGCACGACGTTTGTGAACTACACAGAGGTAAACCCCGCGCGAGCGGGGATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACCCCGCGCGAGCGGGGATGATCCTGGGCGGCCGAATGGATCAATGCCAAGTACGGGGTAAACCCCGCGCGAGCGGGGATGATCCCAGCGTCATCTCAAGGTAACGGTGATCGATCTCGTAAACCCCGCGCGAGCGGGGATGATCCTAACCACAACCGATGGATACTGCCGCAGAACAGGTAAACCCCGCGCGAGCGGGGATGATCCGACGGCCTTGAGATTTCAGCTACGAACGACTGGGTAAACCCCGCGCGAGCGGGGATGATCCCCCCCTGGAGGCGAGCATCGAGCACCAGGCGCAGTAAACCCCGCGCGAGCGGGGATGATCNNNNNNNNNNNN # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 3700-3547 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952072.1 Actinomyces johnsonii F0542 Scaffold786, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================== ================== 3699 31 93.5 30 NN............................. ATTTTGACGGCGGTGGGGAAGCAGGCGCAG 3638 31 100.0 30 ............................... CTGCGGCCCTTGCCATTCCCCATCGTCGAC 3577 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ============================== ================== 3 31 97.8 30 GCGTAAACCCCGCGCGAGCGGGGATGATCCG # Left flank : ATTCCGCGTAAACCCCGCGCGAGCGGGGATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCCGCGCGAGCGGGGATGATCCTGCCGACATTCCTGGCCGCCTGGAAATATGCTTGTAAACCCCGCGCGAGCGGGGATGATCCCCGCTTAAGATATGCAAGCCCCTTAACGCCTAGGTAAACCCCGCGCGAGCGGGGATGATCCGACGTACTCGCCTCCGCCACTCGTGGTCAGCATGTAAACCCCGCGCGAGCGGGGATGATCCGGTCGCTCAGCGGCATGTCCGCTAGGTCGTCGTCGTAAACCCCGCGCGAGCGGGGATGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CAGCCGCCCAGTGGCATCGACCTCGAGAGAGTGTAAACCCCGCGCGAGCGGGGATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAACCCCGCGCGAGCGGGGATGATCCTCATCCTGCGCGGCGGGGCCGCCGCCCCCGTTCGTAAACCCCGCGCGAGCGGGGATGATCCCAGCGCTGCGTTCAATTCTCAGTCCAACCATGGGTAAACCCCGCGCGAGCGGGGATGATCCCGGTTGCGCACGACGTTTGTGAACTACACAGAGGTAAACCCCGCGCGAGCGGGGATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACCCCGCGCGAGCGGGGATGATCCTGGGCGGC # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTAAACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.20,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 7 4009-3796 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952072.1 Actinomyces johnsonii F0542 Scaffold786, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4008 29 96.6 32 ............................C CGCTTAAGATATGCAAGCCCCTTAACGCCTAG 3947 29 100.0 32 ............................. ACGTACTCGCCTCCGCCACTCGTGGTCAGCAT 3886 29 100.0 33 ............................. GTCGCTCAGCGGCATGTCCGCTAGGTCGTCGTC 3824 29 93.1 0 ...........................NN | ========== ====== ====== ====== ============================= ================================= ================== 4 29 97.4 33 GTAAACCCCGCGCGAGCGGGGATGATCCG # Left flank : AACATGTGGGTGTAAACCCCGCGCGAGCGGGGATGATCCCACCACTGGTGTCTTTGTTTTTGATGATGTTATGTAAACCCCGCGCGAGCGGGGATGATCCTAGGCAACAGTCGCGAGCATTGACCATGAAACGGTAAACCCCGCGCGAGCGGGGATGATCCGTTCAAGGATGACACTAACCAATTCATCGGTAAGTAAACCCCGCGCGAGCGGGGATGATCCCATAAACCATACCGATGCGGTTAAGCAGTGAAGGTAAACCCCGCGCGAGCGGGGATGATCCTATCTCCGTACAGTGGAATCTTGACGATTCCGCGTAAACCCCGCGCGAGCGGGGATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCCGCGCGAGCGGGGATGATCCTGCCGACATTCCTGGCCGCCTGGAAATATGCTT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAAACCCCGCGCGAGCGGGGATGATCCGATTTTGACGGCGGTGGGGAAGCAGGCGCAGGCGTAAACCCCGCGCGAGCGGGGATGATCCGCTGCGGCCCTTGCCATTCCCCATCGTCGACGCGTAAACCCCGCGCGAGCGGGGATGATCCGCAGCCGCCCAGTGGCATCGACCTCGAGAGAGTGTAAACCCCGCGCGAGCGGGGATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAACCCCGCGCGAGCGGGGATGATCCTCATCCTGCGCGGCGGGGCCGCCGCCCCCGTTCGTAAACCCCGCGCGAGCGGGGATGATCCCAGCG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 4742-4164 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952072.1 Actinomyces johnsonii F0542 Scaffold786, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4741 29 93.1 32 NN........................... CAATCGACCGCTACGACGTCCTGCGCTCCAGA 4680 29 100.0 32 ............................. GTGGGCGCACACTCACCGACAGTCTCTCCGGG 4619 29 100.0 32 ............................. GCTGCATTCGATAAGTGGGCTGCGGACTCTAA 4558 29 96.6 32 ............................G GGCATGCAAGGTTTCACGTGGAACATGTGGGT 4497 29 100.0 32 ............................. ACCACTGGTGTCTTTGTTTTTGATGATGTTAT 4436 29 96.6 32 ............................T AGGCAACAGTCGCGAGCATTGACCATGAAACG 4375 29 96.6 32 ............................G TTCAAGGATGACACTAACCAATTCATCGGTAA 4314 29 100.0 32 ............................. ATAAACCATACCGATGCGGTTAAGCAGTGAAG 4253 29 96.6 32 ............................T ATCTCCGTACAGTGGAATCTTGACGATTCCGC 4192 29 89.7 0 ..........................NNN | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.9 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : CTGGCAAGACAGTAAACCCCGCGCGAGCGGGGATGATCCCTCGAGTGCGAGGATGGGCATGACGCCGTGCTTGTAAACCCCGCGCGAGCGGGGATGATCCCGTCTCATCGAGCGCTGCCCGGCCGGCGTGATCGTAAACCCCGCGCGAGCGGGGATGATCCGGGAGCGCTCCACCTCGTCCAGCGTCCACGTCAGTAAACCCCGCGCGAGCGGGGATGATCCGCACGCGAGCGAATATGCGGGCGTGGCGTCATCGTAACCCCCGCGCGAGCGGGGATGATCCCGCCATTATGGAAAACAACTTGGGTGCGCAGAAGTAAACCCCGCGCGAGCGGGGATGATCCATGATCGCGTTCACGCCCGTTTTCCACGCGTTCGTAAACCCCGCGCGAGCGGGGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCCGCGCGAGCGGGGATGATCCTGCCGACATTCCTGGCCGCCTGGAAATATGCTTGTAAACCCCGCGCGAGCGGGGATGATCCCCGCTTAAGATATGCAAGCCCCTTAACGCCTAGGTAAACCCCGCGCGAGCGGGGATGATCCGACGTACTCGCCTCCGCCACTCGTGGTCAGCATGTAAACCCCGCGCGAGCGGGGATGATCCGGTCGCTCAGCGGCATGTCCGCTAGGTCGTCGTCGTAAACCCCGCGCGAGCGGGGATGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAAACCCCGCGCGAGCGGGGATGATCCGATTTT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 5292-4897 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952072.1 Actinomyces johnsonii F0542 Scaffold786, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5291 29 93.1 32 NN........................... AGTAGGTGCCCACTTGGGCACCTGGCAAGACA 5230 29 100.0 32 ............................. TCGAGTGCGAGGATGGGCATGACGCCGTGCTT 5169 29 100.0 32 ............................. GTCTCATCGAGCGCTGCCCGGCCGGCGTGATC 5108 29 96.6 32 ............................G GGAGCGCTCCACCTCGTCCAGCGTCCACGTCA 5047 29 96.6 32 ............................G CACGCGAGCGAATATGCGGGCGTGGCGTCATC 4986 29 96.6 32 ....C........................ GCCATTATGGAAAACAACTTGGGTGCGCAGAA 4925 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.1 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : ACGTAATGGTAAACCCCGCGCGAGCGGGGATGATCCGAAATCCCATCGTTCCTCCGTTTCTGTGCACAAAGTAAACCCCGCGCGAGCGGGGATGATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCGCGCGAGCGGGGATGATCCGCCCGCCCTGACCGATTTCATGGGGAATGTCGCGTAAACCCCGCGCGAGCGGGGATGATCCGGGCGCGAAGCTGGCGCGGCTCACGGGCGATGAGTAAACCCCGCGCGAGCGGGGATGATCCCGGCAAGCCGACGTCGATGCTTCTCCTCACTAGGTAAACCCCGCGCGAGCGGGGATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TGATCGCGTTCACGCCCGTTTTCCACGCGTTCGTAAACCCCGCGCGAGCGGGGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACCCCGCGCGAGCGGGGATGATCCCCAATCGACCGCTACGACGTCCTGCGCTCCAGAGTAAACCCCGCGCGAGCGGGGATGATCCCGTGGGCGCACACTCACCGACAGTCTCTCCGGGGTAAACCCCGCGCGAGCGGGGATGATCCCGCTGCATTCGATAAGTGGGCTGCGGACTCTAAGTAAACCCCGCGCGAGCGGGGATGATCCGGGCATGCAAGGTTTCACGTGGAACATGTGGGTGTAAACCCCGCGCGAGCGGGGATGATCCCACCACTGGTGTCTTTGTTTTTGATGATGTTATGTAAACCCCGCGCGAGCGGGGATGATCCTAGGCAACAGTC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 5845-5693 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952072.1 Actinomyces johnsonii F0542 Scaffold786, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5844 29 100.0 32 ............................. CGTCGAACGCAAGATTATGGAAATACGTAATG 5783 29 96.6 33 ............................G AAATCCCATCGTTCCTCCGTTTCTGTGCACAAA 5721 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================= ================== 3 29 97.7 33 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : AGGGGCCAGTAAACCCCGCGCGAGCGGGGATGATCCGGCGGCCGACCTGCGGCCGCCCAGTTGCTTCAGGTAAACCCCGCGCGAGCGGGGATGATCCCAGAAATGGTCTGGTGGTTGCAGGTAATTTCGTGTAAACCCCGCGCGAGCGGGGATGATCCCTCTCTCATCTGACGGGCGACATCGGCCTTGATGTAAACCCCGCGCGAGCGGGGATGATCCGCGAAACAGTCAGCTGCGTGGTGTTCGGGGCAAGTAAACCCCGCGCGAGCGGGGATGATCCTGCCTCGAAATCGTCAAGCTTTTTCTTCGAGTCGTAAACCCCGCGCGAGCGGGGATGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAACCCCGCGCGAGCGGGGATGATCCCTGGGGTACTCGGCTGAGCAGATCGTGCGTATC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCGCGCGAGCGGGGATGATCCGCCCGCCCTGACCGATTTCATGGGGAATGTCGCGTAAACCCCGCGCGAGCGGGGATGATCCGGGCGCGAAGCTGGCGCGGCTCACGGGCGATGAGTAAACCCCGCGCGAGCGGGGATGATCCCGGCAAGCCGACGTCGATGCTTCTCCTCACTAGGTAAACCCCGCGCGAGCGGGGATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACCCCGCGCGAGCGGGGATGATCCCAGTAGGTGCCCACTTGGGCACCTGGCAAGACAGTAAACCCCGCGCGAGCGGGGATGATCCCTCGAGTGCG # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 11 6459-6003 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952072.1 Actinomyces johnsonii F0542 Scaffold786, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6458 29 100.0 32 ............................. TGGTGGCGTCCTCCTCTTCGGGTTTGGGGATG 6397 29 100.0 32 ............................. TGGCCCCACCCGGTACTGCCCGGGAGGGGCCA 6336 29 100.0 32 ............................. GCGGCCGACCTGCGGCCGCCCAGTTGCTTCAG 6275 29 96.6 32 ............................C AGAAATGGTCTGGTGGTTGCAGGTAATTTCGT 6214 29 96.6 32 ............................C TCTCTCATCTGACGGGCGACATCGGCCTTGAT 6153 29 100.0 32 ............................. CGAAACAGTCAGCTGCGTGGTGTTCGGGGCAA 6092 29 96.6 32 ............................T GCCTCGAAATCGTCAAGCTTTTTCTTCGAGTC 6031 29 93.1 0 ...........................NN | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.9 32 GTAAACCCCGCGCGAGCGGGGATGATCCG # Left flank : CAGCTGGCAGTAAACCCCGCGCGAGCGGGGATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCCGCGCGAGCGGGGATGATCCGCACCTCGCCACCCAGATCAATCACCCGTCGCGGTAAACCCCGCGCGAGCGGGGATGATCCCAGGGGAAGGCCGCAGCATGACCGCCCTGACCAGTAAACCCCGCGCGAGCGGGGATGATCCTGCCGCCCTCAAGGGTATTCCCGGGTCGGCATTGTAAACCCCGCGCGAGCGGGGATGATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCCGCGCGAGCGGGGATGATCCGTCCGGTGGCCTCGCGGTCCCACCCCTGTCCGA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAACCCCGCGCGAGCGGGGATGATCCCTGGGGTACTCGGCTGAGCAGATCGTGCGTATCGTAAACCCCGCGCGAGCGGGGATGATCCCCGTCGAACGCAAGATTATGGAAATACGTAATGGTAAACCCCGCGCGAGCGGGGATGATCCGAAATCCCATCGTTCCTCCGTTTCTGTGCACAAAGTAAACCCCGCGCGAGCGGGGATGATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCGCGCGAGCGGGGATGATCCGCCCGCCCTGACCGATTTCATGGGGAATGTCGCGTAAACCCCGCGCGAGCGGGGATGATCCGGGCGCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 12 6766-6615 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952072.1 Actinomyces johnsonii F0542 Scaffold786, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6765 29 96.6 32 ............................C AGGGGAAGGCCGCAGCATGACCGCCCTGACCA 6704 29 100.0 32 ............................. GCCGCCCTCAAGGGTATTCCCGGGTCGGCATT 6643 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTAAACCCCGCGCGAGCGGGGATGATCCT # Left flank : AGGACTTGGGTAAACCCCGCGCGAGCGGGGATGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCCGCGCGAGCGGGGATGATCCGGCGGGGCGGGAGTCGTTACACGTTCGTGATGGGTAAACCCCGCGCGAGCGGGGATGATCCCTCGAGTGCGAGGATGGGCATGACGCCGTGCTTGTAAACCCCGCGCGAGCGGGGATGATCCCAGTGACTCCGTGGGAGAGATTCACAGCTGGCAGTAAACCCCGCGCGAGCGGGGATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCCGCGCGAGCGGGGATGATCCGCACCTCGCCACCCAGATCAATCACCCGTCGCG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCCGCGCGAGCGGGGATGATCCGTCCGGTGGCCTCGCGGTCCCACCCCTGTCCGAGTAAACCCCGCGCGAGCGGGGATGATCCGTGGTGGCGTCCTCCTCTTCGGGTTTGGGGATGGTAAACCCCGCGCGAGCGGGGATGATCCGTGGCCCCACCCGGTACTGCCCGGGAGGGGCCAGTAAACCCCGCGCGAGCGGGGATGATCCGGCGGCCGACCTGCGGCCGCCCAGTTGCTTCAGGTAAACCCCGCGCGAGCGGGGATGATCCCAGAAATGGTCTGGTGGTTGCAGGTAATTTCGTGTAAACCCCGCGCGAGCGGGGATGATCCCTCTCTCATCTGACGGGCGACATCGGCCTTGATGTAAACCCCGCGCGAGCGGGGATGATCCGCGAAACAGTC # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 13 7072-6921 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952072.1 Actinomyces johnsonii F0542 Scaffold786, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7071 29 100.0 32 ............................. TCGAGTGCGAGGATGGGCATGACGCCGTGCTT 7010 29 100.0 32 ............................. AGTGACTCCGTGGGAGAGATTCACAGCTGGCA 6949 29 89.7 0 ..........................NNN | ========== ====== ====== ====== ============================= ================================ ================== 3 29 96.6 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : TCGCGTTGATGTAAACCCCGCGCGAGCGGGGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCCGCGCGAGCGGGGATGATCCGCGAACTCCGCAGCCAGGGCGCGCTTCATCGCCGTAAACCCCGCGCGAGCGGGGATGATCCTCGGGCCAGCGTGTTCCCCAGGGTGGCCTGTACGTAAACCCCGCGCGAGCGGGGATGATCCTGGCTGAGACCTTCGCTACTGTCGAGGACTTGGGTAAACCCCGCGCGAGCGGGGATGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCCGCGCGAGCGGGGATGATCCGGCGGGGCGGGAGTCGTTACACGTTCGTGATGG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCCGCGCGAGCGGGGATGATCCGCACCTCGCCACCCAGATCAATCACCCGTCGCGGTAAACCCCGCGCGAGCGGGGATGATCCCAGGGGAAGGCCGCAGCATGACCGCCCTGACCAGTAAACCCCGCGCGAGCGGGGATGATCCTGCCGCCCTCAAGGGTATTCCCGGGTCGGCATTGTAAACCCCGCGCGAGCGGGGATGATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCCGCGCGAGCGGGGATGATCCGTCCGGTGGCCTCGCGGTCCCACCCCTGTCCGAGTAAACCCCGCGCGAGCGGGGATGATCCGTGGTGGCGT # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 14 8417-8205 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952072.1 Actinomyces johnsonii F0542 Scaffold786, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8416 29 82.8 32 NNNNN........................ CTCCGGCCCTTGCCGTTACCCATCTTGTCAGC 8355 29 100.0 32 ............................. GTCGGGTCGAATGAGAGCTGTGCCGCCCCTGG 8294 29 96.6 32 ............................C ACACGTACACAGCACACGCACACACACCATGC 8233 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 GTAAACCCCGCGCGAGCGGGGATGATCCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACCCCGCGCGAGCGGGGATGATCCCATCCCCAGGTCCGCCATATCCTGGTGCAGGATGTAAACCCCGCGCGAGCGGGGATGATCCGGCGTTCCAGGCGGTCAGGATGGATGGGAACTCGTAAACCCCGCGCGAGCGGGGATGATCCGGCGATATACGCGAGATCGAGGCTCGCCGAATAGTAAACCCCGCGCGAGCGGGGATGATCCCCATACCTGGCGCATACGGGTAGGAGTACGCCCGTAAACCCCGCGCGAGCGGGGATGATCCCGAACCAAGGCGGCCAACAAGTCCAAGACCTTAGTAAACCCCGCGCGAGCGGGGATGATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CTGACCACGGGGAAGCCGTGGACGCGGAGACCGTAAACCCCGCGCGAGCGGGGATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCCGCGCGAGCGGGGATGATCCCGATCTTCACCGCCGTATCCGCCGCCGCCTGCGGTAAACCCCGCGCGAGCGGGGATGATCCGGACGGGGAGGCCTTGTTCATGCGCTGCCAGGCGTAAACCCCGCGCGAGCGGGGATGATCCTAAATCGCCCTCAGGATTCGAGTAGGCGTACTGGTAAACCCCGCGCGAGCGGGGATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCCGCGCGAGCGGGGATGATCCGGTCGGCGAGCT # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 15 8784-8511 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952072.1 Actinomyces johnsonii F0542 Scaffold786, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8783 29 96.6 32 ............................G GCGTTCCAGGCGGTCAGGATGGATGGGAACTC 8722 29 96.6 32 ............................G GCGATATACGCGAGATCGAGGCTCGCCGAATA 8661 29 100.0 32 ............................. CATACCTGGCGCATACGGGTAGGAGTACGCCC 8600 29 100.0 32 ............................. GAACCAAGGCGGCCAACAAGTCCAAGACCTTA 8539 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.0 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : NNNNNNNNNNNNNNNCCCCGCGCGAGCGGGGATGATCCCGCCAGCCATGGGGCCTTCTCGGAGGCGATCTTGTAAACCCCGCGCGAGCGGGGATGATCCCGTCTCTGTCCCGTAGATCAGTCTCAGGCCGAGGTAAACCCCGCGCGAGCGGGGATGATCCCGGGCACCTGCCTAACTACGGTGGCAGCCTGGAGTAAACCCCGCGCGAGCGGGGATGATCCCCGACGTCGCCGGTTGGACGCTGAGAGCCGCGGGTAAACCCCGCGCGAGCGGGGATGATCCGAGAAGATCGCCAACATCAAGAGCGATCTCAAGGTAAACCCCGCGCGAGCGGGGATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACCCCGCGCGAGCGGGGATGATCCCATCCCCAGGTCCGCCATATCCTGGTGCAGGAT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCGCGCGAGCGGGGATGATCCGCTCCGGCCCTTGCCGTTACCCATCTTGTCAGCGTAAACCCCGCGCGAGCGGGGATGATCCGGTCGGGTCGAATGAGAGCTGTGCCGCCCCTGGGTAAACCCCGCGCGAGCGGGGATGATCCCACACGTACACAGCACACGCACACACACCATGCGTAAACCCCGCGCGAGCGGGGATGATCCGCTGACCACGGGGAAGCCGTGGACGCGGAGACCGTAAACCCCGCGCGAGCGGGGATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCCGCGCGAGCGGGGATGATCCCGATCTTCACC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 16 9213-8940 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952072.1 Actinomyces johnsonii F0542 Scaffold786, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9212 29 100.0 32 ............................. GTCTCTGTCCCGTAGATCAGTCTCAGGCCGAG 9151 29 100.0 32 ............................. GGGCACCTGCCTAACTACGGTGGCAGCCTGGA 9090 29 100.0 32 ............................. CGACGTCGCCGGTTGGACGCTGAGAGCCGCGG 9029 29 96.6 32 ............................G AGAAGATCGCCAACATCAAGAGCGATCTCAAG 8968 29 89.7 0 ..........................NNN | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : NNNNNNNNNNNNNNNNTAAACCCCGCGCGAGCGGGGATGATCCGCAAGTTGAGAACCTGGGAGTTTCCTGAAAGAGTAAAACCCCGCGCGAGCGGGGATGATCCGTCCCGGAAGGTCGGAGCCCTGACGTCTCTCTCGTAAACCCCGCGCGAGCGGGGATGATCCTCAGACCCTTGGTCTTGCGGGCGGTCTGGTTGTGTAAACCCCGCGCGAGCGGGGATGATCCCGACGCGTAGGCCGCCTCGGTCTCCCCTTCCTGGTAAACCCCGCGCGAGCGGGGATGATCCCACTATCTTCGGGGAGCCGGGGGACCAGACTGGGTAAACCCCGCGCGAGCGGGGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCGCGCGAGCGGGGATGATCCCGCCAGCCATGGGGCCTTCTCGGAGGCGATCTT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACCCCGCGCGAGCGGGGATGATCCCATCCCCAGGTCCGCCATATCCTGGTGCAGGATGTAAACCCCGCGCGAGCGGGGATGATCCGGCGTTCCAGGCGGTCAGGATGGATGGGAACTCGTAAACCCCGCGCGAGCGGGGATGATCCGGCGATATACGCGAGATCGAGGCTCGCCGAATAGTAAACCCCGCGCGAGCGGGGATGATCCCCATACCTGGCGCATACGGGTAGGAGTACGCCCGTAAACCCCGCGCGAGCGGGGATGATCCCGAACCAAGGCGGCCAACAAGTCCAAGACCTTAGTAAACCCCGCGCGAGCGGGGATGATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 17 9698-9425 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952072.1 Actinomyces johnsonii F0542 Scaffold786, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9697 29 93.1 32 N...........................G CAAGTTGAGAACCTGGGAGTTTCCTGAAAGAG 9636 29 89.7 32 TA..........................G TCCCGGAAGGTCGGAGCCCTGACGTCTCTCTC 9575 29 96.6 32 ............................T CAGACCCTTGGTCTTGCGGGCGGTCTGGTTGT 9514 29 100.0 32 ............................. GACGCGTAGGCCGCCTCGGTCTCCCCTTCCTG 9453 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : TCGCGGTCGCCTCCCTGGGGCATGAGCGTGAACCTGTCGACATCGAGGGGTGTCTTGTTATGCGCAGCCCGTACCGGCAGATCGGGGGAACGCAGGCGATTCCCGGTGCCGTTAAGCCTCCGAAGGAGTCATGGTCGATCGCCGCAAGACGACGGCGCTACCGGAACTCGGCGGAGCGGGCTCTAGGTCGGCACTGAAGGTAAACGCGGTCTGGTAGCATGGCTCATCGTTGGGATTCCAGGGATCCGCAAGTGTAAACCCCGCGCGAGCGGGGATGATCCCGCCTATGGGAAGCTCCCTTGACACGCCTGTTTGTAAACCCCGCGCGAGCGGGGATGATCCGGCAAACTCACCCTGGACGACGGAACCGTCCTCGTAAACCCCGCGCGAGCGGGGATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ACTATCTTCGGGGAGCCGGGGGACCAGACTGGGTAAACCCCGCGCGAGCGGGGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCGCGCGAGCGGGGATGATCCCGCCAGCCATGGGGCCTTCTCGGAGGCGATCTTGTAAACCCCGCGCGAGCGGGGATGATCCCGTCTCTGTCCCGTAGATCAGTCTCAGGCCGAGGTAAACCCCGCGCGAGCGGGGATGATCCCGGGCACCTGCCTAACTACGGTGGCAGCCTGGAGTAAACCCCGCGCGAGCGGGGATGATCCCCGACGTCGCCGGTTGGACGCTGAGAGCCGCGGGTAAACCCCGCGCGAGCGGGGATGATCCGAGAAGATCGCCAACATCAAGAGCGATCTCAAGGTAAACCCCGCGCGAGCGGGGATGATNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //