Array 1 97877-99918 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVGT01000012.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033858 CFSAN033858_contig0011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97877 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 97938 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 97999 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 98060 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98121 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 98182 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98243 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98304 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98365 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98426 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98487 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98548 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 98609 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98670 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98731 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 98792 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 98853 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 98914 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 98975 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 99036 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 99097 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 99158 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 99219 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99280 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99341 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 99403 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 99464 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 99525 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99586 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 99647 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 99708 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 99769 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 99830 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 99891 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116051-117343 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVGT01000012.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033858 CFSAN033858_contig0011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 116051 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 116112 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 116173 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 116234 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 116295 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 116356 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 116417 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 116478 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 116539 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 116600 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 116661 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 116722 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 116783 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 116845 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 116948 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 117009 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 117070 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 117131 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 117192 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 117253 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117314 29 96.6 0 A............................ | A [117340] ========== ====== ====== ====== ============================= ========================================================================== ================== 21 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //