Array 1 228034-228981 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072037.1 Akkermansia muciniphila strain Akk1570 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 228034 31 100.0 34 ............................... CCGCTCCCCGTTGAATAACTACGCCGCTCTATAA 228099 31 100.0 35 ............................... CGATAGGGAATGGATATTGAAGGGGTTGGAGACGG 228165 31 100.0 36 ............................... CTCTCCTTGCCGAACCTGAAATCATGGACAAGTATC 228232 31 100.0 35 ............................... TGGGGAGGCATCGAGTTTAAGCTCAACCCCCGCAA 228298 31 100.0 35 ............................... GATGTATGCAGTCCCGTCTTCGCGATATTTGATTA 228364 31 100.0 34 ............................... CGGTTGCAAGAGTTTGCCCGTGCATTGTACGAAT 228429 31 100.0 34 ............................... CTTCGAAGGTGAGACCGATGCCTCGGACATCCAG 228494 31 100.0 34 ............................... CGGTTGCAAGAGTTTGCCCGTGCATTGTACGAAT 228559 31 100.0 34 ............................... CTTCGAAGGTGAGACCGATGCCTCGGACATCCAG 228624 31 100.0 34 ............................... TCAATCCTGGAAGCCCCGCGGTGAAAATTATCCA 228689 31 100.0 35 ............................... ATCGTAGTCCTTGCGGATGATACGGCGAACGATTT 228755 31 100.0 35 ............................... GGTGCAGACCACCTTTGGTGATAATGCTCGTCGCC 228821 31 100.0 34 ............................... TGAATGGCGACGAGAATGAGAATATCCAGCAAGG 228886 31 100.0 34 ............................... CGGTGGCATGGTTACAATGGGACGATTCGCAAGC 228951 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 15 31 100.0 35 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTAAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCAGATATTTTTCGCAGGTCGCTTCGGGGACACGGCAGTACCGGGATGTCTCTTCTTTTGTGGAAAAGAGAATGAAACGGTTTCCGGGGAGAGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATGTCCCAGCATCGTGTACAGGCCTAGGTTGCCGGAGATGCGGGCTTTTTAACGCATGAAAAGCTCCTTTCCCGGTCTCCCTTCCGCCGACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTTCGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTCACGGCCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACACCCGTTGCACTGTTGATAATCAAACCATAGACGTTCAGGA # Right flank : CAAATTTTACCGCTCCCTGTAACGTGACGGCGAATATGGTGAAAATTGACAGAAAGATGGCGAATTCACCTTTGAACGCCACCCCGTTGCATCCCCATTGCAACCTGGTTGCCCCTCCCTTGAAAACGGCTTGAACTGGCCCCCCCTACTCCCCGATCACGTTCCTGGCGGCCAACTCGTCAAATACGCGGATGAACTCTGCTGCGTCCATCTGCTGCCGGGGCATGTGAAGAGTGCCCAGCGTCACCACGTCCAGCCGGTCATATTTGGCTACTGCCGGCATCGTTGGCCAGCGGTAGGCCGCCCAGCGTCCCTCCGGTCGTGATGCCGACCAGGGACGCTCAATGTGAAGAGGAACCCCTGCGGCCATGGCCAGGCGTCCCGTTGCTATATCCTCCGGATCGTCACTCCCAATGGGCAGCCGGTCCAGAACCGCCAGCATCCGGCGCAACGCGGCACCCGTGAACCCGTAGCACAGGCCGCACATGATCCGTCCGTCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 261323-261823 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072037.1 Akkermansia muciniphila strain Akk1570 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 261323 33 100.0 34 ................................. AAGTTCCGTCGTCGTTTCCCCATCCTGGTTGGTG 261390 33 100.0 33 ................................. AGGGGGTGAATGGCGGCAAGTTGGAAACGGTGA 261456 33 100.0 33 ................................. AGGGGGTGAATGGCGGCAAGTTGGAAACGGTGA 261522 33 100.0 35 ................................. TTCTTCTTCTTCTTCACTGGAAGATTCAATATTCA 261590 33 100.0 33 ................................. AGCGCGGTTGACAGCGTGAAAGCGTGCACTGGG 261656 33 100.0 35 ................................. GAATTCAAGAGTGCAATTAGTCATCCGGCAACCCG 261724 33 100.0 34 ................................. CAGCAACGCGTCCATGTTATTTCCCCTCCCGTTT 261791 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= =================================== ================== 8 33 99.6 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : TGCTCCTGGCGGCCTTTTTGTTTTCCTGTTTCACTCGTCTTCGTGGATAATCACCCACACGTTATTGAGCACGTCCCGTACCCATGCTGTTATCTCATGACCCTGACGAGTGGCCCATATTAGCACAATGGCCGACTCCCGCAGATGATAGGTCTGGGGATGGGCATTACCCTGGTCCTGCGGAGATATGACAGTAACTGATCCGTACACTGGGATCGGCGTTATAACAAGAGGTGTATTTGATTCAGACATGGCCGCTATTTCTCTTAGTTTGCACTCTTCTTGCAACGACATTGCACTCAACGAAAAAAATTCACCATCTTTCTGTCAAATTCATTTCTATCGCGGAATTTTTCACCTTCTTTCTTCCTGCACGTTGTCCACCCTGCGAGCCTTTAATTCATCAAGCTTTCACCCCTCTTCACCCCAAATTCACCCCTTTTCCATGATCCCTGTCACACCTCACAGGCCATGATCGACCGCACCCAGTCCCAGGGATT # Right flank : AAGAAAAAGCTCTCCGAGCTTGTTTGGTCTAGAGAGCTTTTTTGTTCCATCATCTTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCTGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGGCCAGCCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATGTGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGGCTGTCTCCAATACGGTTGACATATCCCTGCGCAATGAGATCCTGCAGGATATTGGTGACGGTATTGGGGTGCAGGCGTGTAGCTTCCGTAATGGTG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 851477-851122 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072037.1 Akkermansia muciniphila strain Akk1570 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 851476 31 100.0 35 ............................... TCCATGCCGAAAGGGAACCATGCTATTTTATCAGG 851410 31 100.0 34 ............................... TCCCTACCGGGGAAATTGCCACCCTAGTTAAAAA 851345 31 100.0 32 ............................... CCTCCTGCTCCTGGACATGGGAATACCTTTCA 851282 31 100.0 34 ............................... CCTGAATGAGCAGGCTCAGGGCGACGCCGGACTT 851217 31 100.0 34 ............................... ATCTTACCCAGCGCGGTAAAGACTTGCTGTTTAT 851152 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 6 31 100.0 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : CAACAAACCGATACGTCCCCCAAGTTGTTTCTGAGGAATGACAGGATAGTTGATATAAGTTGAATCAGGGTTGAAATCCGTTGGAACCCTAGAAAACACGGGAGTTAAGGCGGATCAGACCAGTCATGAGCTATCTTATAAAAGTCGCAGCTGAAAAGAGGGTAAATGACAAGTATCTGATATAAGTACACAGGCTATGCAGGGATGCTGCACAAGAGCTGCAAAGAGTAGGTGATAGAGCAACGACAAGGTAAAAAATCATGATAGGATGCCCCGCATGTGTACACCTACATATTGCATCCCCTTGTACGGCTCCGTTACCGTTATATCCCCAGCAGACCGGAAGAAAAAGAACCCGCAAATTTATCACCTCCATGATACCGCTGTCGTGTTGATGTGGACAACTCGTGAGGGAAGTAAAACGACGTGCTGGGTGAGGGATATGCTCGACAACGTGTGGATTGTGATCAGGGATGAGAGAGAAGATGATTGAAAAGAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //