Array 1 186-2259 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZGW01000016.1 Moraxella catarrhalis strain COPD_M94 NODE_16_length_36599_cov_23.4694, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 186 28 100.0 32 ............................ TTTGTCTGTTAAGCTTTGATTAAGTGTGTTAA 246 28 100.0 32 ............................ CAAACGGTGGGGTCTCATACCTCATCAATCCG 306 28 100.0 32 ............................ AGTCGTCGAAGCGTGGCTTGTCGCTGTCGGTA 366 28 100.0 32 ............................ AATTGCCAATCTTGGCACAATTGAAAGCAACA 426 28 100.0 6 ............................ TGATTT Deletion [460] 460 26 92.9 0 ..........................-- - Deletion [484] 486 28 100.0 32 ............................ TTGCTAAGCCGATGCCTGATACAATGCCGCCA 546 28 100.0 32 ............................ TGCCCCTGCAGCGATTAGCCCAGCATTGCCTA 606 28 100.0 33 ............................ CGCAAAATCAGACACGCCATTATTACTTGCTAA 667 28 100.0 32 ............................ CATAAAGTATCATCACATTCACTTGAAATTGA 727 28 100.0 32 ............................ AATGGGGTGAAACATTACTTTAGAGACAATAC 787 28 100.0 32 ............................ TTTCATGACCTGCGTAGAACTGCACGCACCAA 847 28 100.0 32 ............................ GTATTTCGTGTTTGCCTCTCCAAAAATTGAGC 907 28 100.0 32 ............................ AATGCTGATACTACCGCCTCGGATGTTGGGGG 967 28 100.0 32 ............................ ACTCACTACAAAAATACTTCGCTTTATGCTGT 1027 28 100.0 32 ............................ ATAGCCCGCTAAAGTCGTTGGCTTATTGGTAA 1087 28 100.0 32 ............................ TGTTCTGATGCGTCTTGACAGCGCTTGCTCTT 1147 28 100.0 33 ............................ TTACACTTGTAATCGTCGAAATGCTTCTTGTGT 1208 28 100.0 32 ............................ ACCACAAAAGTAAGGTGGGGATTTACTGCGAT 1268 28 100.0 33 ............................ TTACACTTGTAATCGTCGAAATGCTTCTTGTGT 1329 28 100.0 32 ............................ ACCACAAAAGTAAGGTGGGGATTTACTGCGAT 1389 28 100.0 33 ............................ TTACACTTGTAATCGTCGAAATGCTTCTTGTGT 1450 28 100.0 32 ............................ ACCACAAAAGTAAGGTGGGGATTTACTGCGAT 1510 28 100.0 32 ............................ TAACAACCCCAGTGGGCGCAAACTTTTAAGGA 1570 28 100.0 32 ............................ ACAATACCGCAGAAGGCATTTCTTTTGATAAA 1630 28 100.0 32 ............................ TACCTGAAATCAGACACGATCAAATTAAATTA 1690 28 100.0 32 ............................ CCAAAGACACCACACATCAGCTACTGCAAACC 1750 28 100.0 32 ............................ ATAACAGCAACAGGTACAACCGCCGATAAGAT 1810 28 100.0 32 ............................ TTGCAGGTGCTGAGAGCATTAGCGATAACTTG 1870 28 100.0 32 ............................ GTTGTTAAGCTTTGATTAAGTGTGTTAATACT 1930 28 100.0 32 ............................ TTGATTAGTTGAGTTTATATTTGCCCAATTGG 1990 28 100.0 33 ............................ ATTCATCTCATCAGCCATCATTTCGCATTCAGG 2051 28 100.0 32 ............................ GCTTTGGCGGTTTTATTCGGCTCACTTGGCGT 2111 28 100.0 33 ............................ AACCGCTTTAAATGCAACAGATAAGGCATCTGT 2172 28 96.4 32 ...................A........ TGGGGAAGTTAGGCATTTAAAATGGCAGGATA 2232 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.7 31 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : CGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACTC # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGCGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //