Array 1 10290-14231 **** Predicted by CRISPRDetect 2.4 *** >NZ_WESA01000041.1 Rectinema subterraneum strain SURF-ANA1 NODE_41_24314_8187558391, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 10290 36 97.2 35 ...................................G CTTTATTTCCGTTTCTATTCGTCATATTCTCTACT 10361 36 97.2 38 ...................................G CCATGAGCCCCAATCGCTCATCAATCTTCATAATACCC 10435 36 97.2 41 ...................................G CAGCCCCTCACAAGGCAGGACATCCCCTTCTAATGCTTCAT 10512 36 97.2 38 ...................................G CGATAATCCTGTTGCCTTCATCGCGTTCTACGCCCCTA 10586 36 97.2 40 ...................................G TTGCGAATTGTTCATTCTCCTTGCATACTTCCTTCTCTGT 10662 36 97.2 42 ...................................G TTCCATAACACCATTACAATACCTCCTCCTCCTTACTGTCGG 10740 36 100.0 44 .................................... GCAGATCTCTATTACGGCGAAATATTCGCCGTCCGGCGAGTATT 10820 36 100.0 40 .................................... CGATCCGCGGAAGCCGCCGTTGGCCCCCGCCATTAACAGT 10896 36 100.0 39 .................................... CCCGATAGCCGACGCCGGTTCCTACGATCTGTCCACAGT 10971 36 100.0 41 .................................... CTTTCCCTGGCAGTCTTTTTCAAATACCCCACCCTCTTCAG 11048 36 100.0 42 .................................... ACATGATCCCCAATCGCTCATCAATGTCTTCGGCGGAGTAGT 11126 36 100.0 35 .................................... CGTCAAGCAGCATCAATCGCCTACGTGTCCCTTGT 11197 36 100.0 40 .................................... CTTGGACGATATATCGTCCAAGGGCTTCTTGCTCGTCACT 11273 36 100.0 39 .................................... CATCCTCCTCCTCCTCGGAGGATGAGGGCTCGTGGAGCA 11348 36 100.0 39 .................................... ACGGCGGCGGCCCACGCTTCGGGCGCTTCAGCTTTGATT 11423 36 100.0 41 .................................... CGGTGAACAAAAAGATAAATAACCTCATAGCGCAGAGGAAT 11500 36 100.0 40 .................................... TCACGCGCCCGAGGGCTTATTCTCTCTCTCGATATATAAA 11576 36 100.0 42 .................................... CGGATCCGCCGGCCTGTTGAAAGCGCGCGAGGATTGAGTCGG 11654 36 100.0 41 .................................... TAGCTTTCAACTTCTTCAATAGTGGGTTTGGTAAACTTTTG 11731 36 100.0 37 .................................... ACGGACGCCCAGCAGAATTTCTTGAATCAGGTGGCGG 11804 36 100.0 41 .................................... TACTCTGGGCTTACGGCCGGTATGCTTTCCGCCATATCCTG 11881 36 100.0 37 .................................... ATTGATCTTGCCTTTTCTTCTCGCTCGATTGCCTCGT 11954 36 100.0 35 .................................... GCGCTCGGCCGAAACGCCATGTAGGCGCCCGGCCT 12025 36 100.0 38 .................................... TCTCGTACTGTCCGGCAATCACCTGCCGGGCAGTATCA 12099 36 100.0 37 .................................... GCCGGCCGACCCTGAATAATATGATAATCACGCGCGG 12172 36 100.0 41 .................................... CAGGGCTTTTTGCTCGTCACTTTTCAGTGACTTAATAAACG 12249 36 100.0 40 .................................... TCGTACTGTCCGGCAATCACCTGCCGGGCAGTATCATACA 12325 36 100.0 37 .................................... GTATCACTAATATAGATAAAAAAGCCCTCGCTGCCGT 12398 36 100.0 36 .................................... TCGCCGTCACTCTCATATTGTCGGAGATTCCAGCCA 12470 36 100.0 41 .................................... GCGAGCGAGTCTTTGCCTGTACTAAACATGAGGATGGGTAT 12547 36 100.0 40 .................................... TTGGCCCCCGCCATCAATAATATTCTATTAGTGTGATCTT 12623 36 100.0 38 .................................... AAACGAATTCTTTCATCTTCTTTTACCTCCTAGCCCGC 12697 36 100.0 40 .................................... TGTGGAGCAGCATATGCTGCTCCAGCGCGTTGCGCGCGAA 12773 36 100.0 41 .................................... CGGCCGTGAGATCCGTCAGCTCTTGACGGATCTCATCAAGA 12850 36 100.0 38 .................................... CCCTCTGAGGAGGAGGGCGTGTGGAGCAGCATATGCTG 12924 36 100.0 40 .................................... TAAATGGGCTCTTCGGCCCTATAGCCGACGCCCGTTCCAA 13000 36 100.0 38 .................................... GCGACCCAGGGCGCGGGCTGCGGCGGAAATGTCCGCGG 13074 36 100.0 37 .................................... ATCATATACAGCGTCCACATCGACCTGCGATAGCGAC 13147 36 100.0 41 .................................... CGACCGTCATCCATGGCGAACTCATTTCTTCGACTCCGCCA 13224 36 100.0 41 .................................... CCGTAGACCTGCCTCATAATTGCCCGCACGGAGTCGACCGC 13301 36 100.0 40 .................................... CTTCCTATACCTCTCTACTAAAATCATGGCGCTTGAATGA 13377 36 97.2 39 ............G....................... GCCCATTCGATGTGCTCATCCAGAGCCCTGCGCGCCTGA 13452 36 94.4 40 ............G.....................G. CTTCTGGATGAGCATATTTTATATGCTCATTCAGTTCCCT 13528 36 97.2 34 ............G....................... AAACCTTCTTCGAAGGTTTTCCAATTTCATTCTT 13598 36 97.2 40 ............G....................... GCGCGGCTGGATTAAGCTCAATCCAACTGCTGTAATAATG 13674 36 97.2 40 ............G....................... TGCACCAGCGTCGGGCTGCTGCCGCCCAGGCCGGATCAGA 13750 36 97.2 41 ............G....................... AAGCGGGGCGATTGTCTCATTCTTTGGGCGGCTTGCGGTAG 13827 36 97.2 40 ............G....................... CAGTGAGTCCAGAAGCAGTTTTTCAACTGCTTCAGCCAGT 13903 36 97.2 37 ............G....................... CATGATATCCGCCAGCTCTTGGCGGATCTCATTGAGA 13976 36 97.2 37 ............G....................... GCAGACCTCTACTACTCCAAAAAACTCCCCATCTGGG 14049 36 97.2 36 ............G....................... ACTTTGCCAGCCCGCCCTTGCGACCCAGGGCGCGGG 14121 36 97.2 39 ............G....................... AAGCGATTCAATGCTACTGCAATTGCATAGCGAGCATTC 14196 36 88.9 0 ...............................CCCG. | ========== ====== ====== ====== ==================================== ============================================ ================== 53 36 98.8 39 GTATTGAGATTTAGACCTGATAGAAGGGATTAAGAC # Left flank : ATAAAATGCATTGGCTCGTTGTCTATGATATCACTGATCCCAAAAGGCTTAGGAAGACGGCAAAAATTCTTGAAGCATACGGCAACCGGATACAGCGGTCCGTTTTCGAGATTGTTGCAGATAAATCGGTTCTCGACATGATTGAAAAAAGAATCTCCCTCATCATGGAGGATCCCGATTCTATCGCCTACATTCCATTGTGCCAATATGATTATGCCTCAGTTGAGCGGTTCGGGAAAAGACTATATGATACTCTCGATACCGATAGCGCAGACAAGACAATAATTCTTTGAAGGAAGCGCGCAGACCTTCGGAGGTTTCCAAAATGGCGGATTTTTCGGCAGGTTGGCGGGCGGAAATATCATTTTGTATGAGAATAAATAATCTAGTTTCGCATTACCTTGATTCCGGCACAATCGTGAATAGGAGGCATGATTGCCAGGACATCAGCGGAAAGCATTTCTCAAGTTGTTGCTTGGCAAAGGAATACAGGAAATGCA # Right flank : CCTTCTCGGGAGAGCTGGCGGTTTGAATAAGCCTTCTAGAAGCTTCGTGCTAGTGTTCTTAAGTGGAACGCTCAGTTAGAATGGTGGGAGCGAAATAGAAAAATCAGCTCTTGACACCAGCCATTAATGGGATAGAATTCGAAATAAAGAAATCATCATGAAAATTGCGGAACTGAAGTTCAGGCTGGATTTTGCTAGCCCTGTGTATGTTGATGTATTTCCAGCATTCGCTCTTCGTAGTGTGTTGGGGCTGAACCTCAAGCGGATGCATTGTGTTTCCCATAATACTCTATGTCCTGAATGTCCTTTTGTGGCGACATGCGCGTATGCCTATCTGTTCGAATCGATATTGCCTAAAGGGAATGATGTACTGCCGGGGAGGGATCGGGCAAGTCATCCTTTCAGGATCGAAGTGCCTGTACTGATAGGGCAAACCATTTCCCAGCTTGAATTCGGATTTCAGCTTTTCGGGCGCGGTGTTGAATATGTGCCGCATATTA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTGAGATTTAGACCTGATAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 1296-46 **** Predicted by CRISPRDetect 2.4 *** >NZ_WESA01000045.1 Rectinema subterraneum strain SURF-ANA1 NODE_45_22018_92143349154, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================== ================== 1295 32 100.0 35 ................................ TTAATCATATTTGATGTTATAGGAAGCCATTTTAT 1228 32 100.0 33 ................................ CCCGAAGATCCCTCCGCGCTTGATGAAATTTGG 1163 32 100.0 35 ................................ ATCCGCCATTGGATTCTCAAGAGGGCTCGAGTCAT 1096 32 100.0 35 ................................ GTGAGAAAGTGCAAGATCTGTCTCAGGAATATGCA 1029 32 100.0 37 ................................ CACTTGCATGGTGAGCCAATTGAAACCGGCGCTGAGC 960 32 100.0 35 ................................ TCACGAAGCATGACGACGACCGCTTCGAGCTTCGC 893 32 100.0 35 ................................ TCACGAAGCATGACGACAACCGCTTCGAGCTTCGC 826 32 100.0 46 ................................ TCACGAAGCATGACGACGACCGCTTCGAGCTTCGCAAGCTCTTCAG 748 32 100.0 35 ................................ ATTTCTGCATCGCGCGCAGGGCCTCATGGTTATTA 681 32 100.0 35 ................................ TCACGAAGCATGACGACAACCGCTTCGAGCTTCGC 614 32 100.0 36 ................................ CTTCATTGTCATCCATTCATCACCGACACGGATGTG 546 32 100.0 34 ................................ GTCACTATCAAGCATGCAACTTGCGAATCATCTT 480 32 100.0 35 ................................ GAGCGTTATTACTATCCAAAAGAGCCATTCAATGA 413 32 100.0 35 ................................ TGCAAATTGAGATATGTTTGATCCAGATCAAATAT 346 32 100.0 34 ................................ GCCTATACCGTGATCGGCAACGAAATGCCGTCGA 280 32 100.0 36 ................................ AAAATGAAAAAGATGAGAAGGCTGCCGAATATATTA 212 32 100.0 35 ................................ ATTACGCTCACCAAACATTGCGCGACGAAGATTAC 145 32 100.0 36 ................................ TTACCGAATCGCAAGAAAAGCTTGCAAAAGCTTTCG 77 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ============================================== ================== 19 32 100.0 36 GTCGCGCCCCCCGCGGGCGCGTGGATTGAAAC # Left flank : ATGTTACGAATCCTGGTGGGGCTCGCAGACTCAGGCGTGTCGCACGGACCTTGAGCAATCATGGGCAGAGAGTTCAATTCTCAGTCTTTGAATGTGTAGTCGACCCGGCCCAATGGGTAAAGCTGCGGGCAGATTTGGAAAACATTATCGACAAGGAAAATGACAGCCTACGCTATTATTATCTGGGATCGAACTGGAAACATCGGGTCGAGCATATCGGGGCAAAGCCTTCCCTGGATTTGGATGATCCATTGATTGTATAGGGCAATCAAGGCTTAGACTCGACTGAAGCGTCTAAGCAAAGCAGCCGGGCAGCGCGCTTGCGCGAACCCAGACGAAACATGAAATGCCGGGCCATTCGCAAATATTGCAATTCATTATGCTGGCATGTCTTTGACAAATAAGGGAAGGAATGATAGGTTACTGGAACGGCAAATGCTGGCTCTTTCGCTATAGCGATATTGTATTTTGTTGTATTATTAATATATATTAGCAATACA # Right flank : CGTGAGAAAGTGCAAGATCTGTCTCAGGAATATGCAGTCGCGCCCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCCCGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.90,-7.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 46-3018 **** Predicted by CRISPRDetect 2.4 *** >NZ_WESA01000038.1 Rectinema subterraneum strain SURF-ANA1 NODE_38_26188_9486713138, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 46 32 100.0 34 ................................ TTCGTGAAGCGCATCGAATTCGACCCTGTGAACC 112 32 100.0 34 ................................ ATATTATCAATAGTTCTGAGAAAAGCTGGCAATT 178 32 100.0 34 ................................ GTGAGAAAGTGCAAGATCTGTCTCAGGAATATGC 244 32 100.0 34 ................................ ATGATGCCATGGTTACCGGAGAAATATTGAAGAG 310 32 100.0 34 ................................ TTAAGTGGATGGAAAGAATGGGCACGATACAAGC 376 32 100.0 34 ................................ AGGAGCTCTTTGCTCACAGGGCGCCCATGAAAAA 442 32 100.0 36 ................................ GTGAGAAAGTGCAAGATCTGTCTCAGGAATATGCAG 510 32 100.0 36 ................................ TTACGTCAAAGTTCGTCGATGCCCAGCCGTTCTACC 578 32 100.0 33 ................................ GTGAGAAAGTGCAAGATCTGTCTCAGGAATATG 643 32 100.0 34 ................................ CGTACCGATGCAGCACTCGCCGCGGCGTCGGTTT 709 32 100.0 34 ................................ TATGGCGTCGATCGCGCTTCGCTCCTCGCAAAAC 775 32 100.0 35 ................................ TTGGAATGGACTGGGTGGCGGGAGAATTTTTGCTC 842 32 100.0 35 ................................ ATTATGGGATCAGGGCGGCTCGAACGCCCGACCTA 909 32 100.0 35 ................................ GTCCCATGCCACAAGGCGCTGCATATGCCTCACGG 976 32 100.0 36 ................................ TCGCTGCGTTCTATGCGCGCGAACCGGAAGATATTG 1044 32 100.0 36 ................................ ACGCGCAATGCCATGATCCGCTCTCGAAACTCGCGC 1112 32 100.0 35 ................................ GCAAAAGCGCCAACATGGGTGTGGGCGATCACGCT 1179 32 100.0 35 ................................ GATGTCAAGGCGCACTCGCGGCGCGAGGCAAAAGA 1246 32 100.0 35 ................................ GTAAAACGATTTGGCGAATCCCGCATGGATAAAGG 1313 32 100.0 36 ................................ GCAATCCCGATCCGGCATTTACCCCGCTCTCATTTT 1381 32 100.0 36 ................................ TTTAGCCCAGGGGCGCGATATCTTGTTAGTCCTGGG 1449 32 100.0 36 ................................ AGGATTTTTAGGGAAAATAGTAGCAATCATATTGGC 1517 32 100.0 35 ................................ GTCATAATAGACATCTCCGCGCCATGAATTGCTAC 1584 32 100.0 36 ................................ ATGGGAAACCTCCTTGCTCCGGCGCTTTACCGCGAC 1652 32 100.0 33 ................................ TCATATACTGGCAGGTTGCGGATAATATGGATG 1717 32 100.0 35 ................................ CTTGGCGATGCGTTTGTGTGGCTCTATAACAACGT 1784 32 100.0 35 ................................ GGAATGCAATCGCGGGCATAATCAATACCCTGCTC 1851 32 100.0 34 ................................ TTTGTGACGGTACACCCATTGAAGAAGACTGGTG 1917 32 100.0 35 ................................ CACAAATGCTCTTGGAAGCGGGTTTAAATCTTGTG 1984 32 100.0 36 ................................ CACAAAAGAGACGGTCGATGAGAATGGCACTCGTCA 2052 32 100.0 35 ................................ ATAAGCCTTGGCTGTAGCTTCGGCCTTTTCTTGGA 2119 32 100.0 36 ................................ AATAACTGAACCCGATACCTGTACCTTGCTCCCCTC 2187 32 100.0 35 ................................ CGTGAAGAAACGGGGATATTGATTTCGCATATAAT 2254 32 100.0 34 ................................ TTTGTGACGGTACACCCATTGAAGAAGACTGGTG 2320 32 100.0 35 ................................ CACAAATGCTCTTGGAAGCGGGTTTAAATCTTGTG 2387 32 100.0 34 ................................ AGATCCACTGAAGAGCGATATAACAAATGATATT 2453 32 100.0 34 ................................ GGAATAATTTTGATAACCCTTTACTATAAGCCTT 2519 32 100.0 36 ................................ TTTCTACTTTTTTTGCTCTTTCGGTTGATTTTGGAT 2587 32 100.0 35 ................................ ATGGCAGTACCAATCGCATCGGTGGCAGCCATCTT 2654 32 100.0 35 ................................ ATTTGCAGCGGTCAGGCGGAAAGTGTACGTTCCAC 2721 32 100.0 34 ................................ TCGAGACCTCTGAATGATTTTTTCGATTTCCTGG 2787 32 100.0 34 ................................ TCTTTTTTGAGCTGTTTTTCGATAAGCAGGGCTG 2853 32 100.0 35 ................................ CCATGACGCATGGCTCATAGCCTGCCGGTATCGAC 2920 32 100.0 35 ................................ CGGTGCAGAATACCACCAGCAACAGCTATAACCTT 2987 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 45 32 100.0 35 GTCGCGCCCCCCGCGGGCGCGTGGATTGAAAC # Left flank : GGATTGAAACGTGAGAAAGTGCAAGATCTGTCTCAGGAATATGCAG # Right flank : CCAATGTCGTTGTCGGCATAGTCAAGCGGATCGCAAGTCGCGCCCCCGCAGGACGCAACAATAAACATTTTTCAGCAGGCACACAAAAAAATAAACCAAGTACACTTCAGAAGTGAATCTGCAGGTTCAATTCTTGCCTGCCAGCTTAACGACAGCCAAGATTTCCATTTTTCATTCTATCTTTTTCTGCATCATGACATATCGCTTCCATGGTACAAAGCCGAGCTTTGCATAGAAGGCTCCGAGATCCGTCCAGTCGATGACGGTGTTGCGGATGCCGCGAGCCTTCAGTTCTGCAAGTGCAGCGCGCAGCAGATCCATTCCTAAGCCAAGGCCGCGGTATGCTGCGTCAATGCCGATAGGGCCGAGCGCTCCAGGGTTCGGGCCAAGCAATGCCCGCCAATAGAGGCCGGGGCCCAGGATGGGACTTTCTTCATCATAAATCCGCGCAAATCCTGCAACACTTTGGTCGCTGTCACGAATAACTAGGACAAGGTCTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCCCGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.70,-7.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 46-4014 **** Predicted by CRISPRDetect 2.4 *** >NZ_WESA01000096.1 Rectinema subterraneum strain SURF-ANA1 NODE_118_4059_11216515742, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 46 32 100.0 38 ................................ ATCGACAAGGAGAAAAAATTTTTAAGTGCAGCTGCGAT 116 32 100.0 35 ................................ ATCCCGGCGTGTGCGTTGGCACGTACACCGTCGAG 183 32 100.0 37 ................................ CCAAAATGCATATATAAACACATTGCCATCAGGTGCT 252 32 100.0 33 ................................ GGCTCATACGTTATCGCAAACGGCGGTGCAGGT 317 32 100.0 35 ................................ CTGTTAATTTTTGTATACAAATTCTCATTTTTCTC 384 32 100.0 35 ................................ TTTATCAACGATAATCGGCGGAAGCTCGATTCCAG 451 32 100.0 34 ................................ TTGAAGCGTCCTGTTTTATTCCCAAATCTAGTCT 517 32 100.0 35 ................................ TTGTCAGGCAGAGCCTGTATGGCCTCTAAAATCCT 584 32 100.0 33 ................................ CTTTTTAAGGCGATGCTTGGCGGCGCGGATACA 649 32 100.0 37 ................................ GGGCGTGCGATGGAAAGACTTCCCGGACTATCCCCAC 718 32 100.0 33 ................................ TTGGCATTATTACTCCTAATGGATAATCAGGTA 783 32 100.0 34 ................................ AGGCGATAAATATATTGTGTCGTGCCACCGCTGT 849 32 100.0 36 ................................ GTAGTAGTAATAGAGCAGATTACCGTACTGTTGCGC 917 32 100.0 35 ................................ AAGGTTGTTTCCGCAACCTGCACTATCGCCGGTAC 984 32 100.0 36 ................................ CTCGCTCCTCAATGTCATCAGGCGAAAATCCAGCGC 1052 32 100.0 37 ................................ AAGATCACCGCGAAAGGCACCTCGAGCGCATTCCCGG 1121 32 100.0 33 ................................ CTTGGTCTCGAAATATTTGGATTGGTGTTACGG 1186 32 100.0 34 ................................ CGATCTATGCCCGATCACTTCCCTTAGCACTTGG 1252 32 100.0 34 ................................ CCTGACGATTTCACAGACTGGCTTGTTGATCTTC 1318 32 100.0 34 ................................ TGGCCGAGTCGAATCCTGAATCACGATCCGGAAT 1384 32 100.0 36 ................................ TCGAGATAGAGGTTTAAGATTCTCACTGTCTTTTCA 1452 32 100.0 35 ................................ TTGTAGAGCCACACAAACGCCTTGCCGATAAGCTC 1519 32 100.0 37 ................................ TGGACATGGAGCCGGAGAGTGATGACGAGTTTGGCGC 1588 32 100.0 36 ................................ CCTCGACCAGGTCTTGCCCTGACTGGGTCGCAGTGC 1656 32 100.0 34 ................................ ATTGTATCCACCCTCATATTTAGGCTTGATTTCA 1722 32 100.0 34 ................................ ACGGTACTTCCGGCATAGAAATGGCAGGCGGCGG 1788 32 100.0 36 ................................ TACTTTCTCTTTTAGATCTTCATAAGCATCACGTAG 1856 32 100.0 34 ................................ ATTACAGCAACAATGGCGCAGCAACGCGAATTAC 1922 32 100.0 36 ................................ ATCCGTCAGACTCACTCTATCCATCGGAGACCTTAT 1990 32 100.0 35 ................................ ATCGGCTCGACTGATGACTCGGCAAACTGGACAGT 2057 32 100.0 35 ................................ TCCAGCAGTCTCCGGTTGTCGGCGATGGCGGGATG 2124 32 100.0 35 ................................ GACAAACTCATCTCTGCCATCACGCCGTTTGCTGA 2191 32 100.0 35 ................................ CGCTACACGGATTTTTGCCAGCGCGTCATCGACAT 2258 32 100.0 34 ................................ TGGCGGTCATTGATGCGCAGGAGCTGCAACTCCA 2324 32 100.0 34 ................................ GGCGTAATTTTGGCAGTCCTGTGCCCATTTTTAC 2390 32 100.0 35 ................................ TATACTCATCCACGCAGTCTGAACGGGGAATCTAT 2457 32 100.0 36 ................................ ATATTCTGGCGCAGGTGCATGTGGCGGTGGCGGCGG 2525 32 100.0 36 ................................ ATAAATTGGCATAAAAACTTGCCCCTGCCAGCATTA 2593 32 100.0 34 ................................ AGCGCATCCGCCTTCGCCGCTTGGATTCGCTTGT 2659 32 100.0 35 ................................ CAGTAGATGATGATGCACTGTTCGTTTTTGATGCT 2726 32 100.0 33 ................................ TAGGCCATCCTATGCGCGCCTATGGGCAAAAAA 2791 32 100.0 34 ................................ CGCGGTGTTTACGGTGTCGCATCGATACTCTTGC 2857 32 100.0 34 ................................ CGTACTACCGCGGAAGGACAGGACTTCCGCGGTG 2923 32 100.0 34 ................................ TGGATTGCCGCTGCCGACACAACAAGCATGTAAG 2989 32 100.0 36 ................................ ACTGTAGGCGCCACCGCCACCGGTTTCATTACACTA 3057 32 100.0 35 ................................ AATGGATGCGCGCGCGATATGCGTGCGCGAAGGTG 3124 32 100.0 33 ................................ CTCAGCTGGTGAAACCGTCGACGGTTTCACCAT 3189 32 100.0 33 ................................ GCATTATGTAGCAAGATACTTGCTACACCGTAA 3254 32 100.0 34 ................................ TGCCGGAATGCAGAAAATGCAAAAAATGCACGGA 3320 32 100.0 34 ................................ AATGGATGCGCGCGCGATATGCGTGCGCGAAGGT 3386 32 100.0 34 ................................ AAAAAACCAACCATTGCTGATGTACAAGCCTATT 3452 32 100.0 35 ................................ GTACATCGCTACGAAAGTATTGACGGTTGATGACG 3519 32 100.0 34 ................................ TATATACCGATACTCATGCGCGCGCCTTGTAACC 3585 32 100.0 36 ................................ CCGCAAGAAGCTTGCGGTATTCTGACCGCAATGCTT 3653 32 100.0 33 ................................ CGTGAAATTCGCTGAGCATACGCTCAGTGTCTG 3718 32 100.0 34 ................................ ACACTCATTCCGTTACTCTATCATTATTCAACCT 3784 32 100.0 35 ................................ TTAATCATATTTGATGTTATAGGAAGCCATTTTAT 3851 32 100.0 33 ................................ CCCGAAGATCCCTCCGCGCTTGATGAAATTTGG 3916 32 100.0 35 ................................ ATCCGCCATTGGATTCTCAAGAGGGCTCGAGTCAT 3983 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 60 32 100.0 35 GTCGCGCCCCCCGCGGGCGCGTGGATTGAAAC # Left flank : GCGATATTGTATTTTGTTGTATTATTAATATATATTAGCAATACAG # Right flank : GTGAGAAAGTGCAAGATCTGTCTCAGGAATATGCAGTCGCGCCCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCCCGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.70,-7.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //