Array 1 41-1735 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAJY01000075.1 Prevotella falsenii DSM 22864 = JCM 15124, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 41 37 100.0 35 ..................................... AAATTTTTAAAGTTTACAAAGATTCGGTAGTAGCT 113 37 100.0 35 ..................................... TGGAATTAATCGACGCAACAAAGGGCGAAGATTAC 185 37 100.0 39 ..................................... CAACGGGCGTTGTTCTTGGGGAAAAGAACGGAAGACCTT 261 37 100.0 29 ..................................... TACTAAACAACAAAGTTTGTATTGTGTAA 327 37 100.0 36 ..................................... TAAAAATATGAAAAAGGAAACTATTTTAGTATGGGT 400 37 100.0 33 ..................................... AAAAGTTAGGGTAGTTAAGTTTATGGACAAAAA 470 37 100.0 36 ..................................... TTTAATTAAATCTAATGGTGTTGCTTTATGATTATT 543 37 100.0 37 ..................................... GGTATGATAGATTGCTGCCAAACCAAAAGATGTATTT 617 37 100.0 36 ..................................... TTTATGATGCTATCTCGTTTACAAGAAGAAACAGAA 690 37 100.0 37 ..................................... ACAAGATCTCCTCGAAGCAATTAGAAACTATTGCAAC 764 37 100.0 35 ..................................... AAATTAAAATAACAAATTATAACACAAAGGCTATA 836 37 100.0 36 ..................................... TCATAAGTATATGGCAATAGCAAACATATCTGTAAA 909 37 100.0 37 ..................................... ACGACACTTAGCATTCAATGCAAGCATGACCAATCAA 983 37 100.0 37 ..................................... TCTTCAGTTTATTCTGCATAGAAATCAAGCTACTGCT 1057 37 100.0 34 ..................................... TATATTTTTATGGAGAAAATTTTTGAAGCAAGCG 1128 37 100.0 37 ..................................... TAAGTTTTAACTGCTTCAAAGATGGCGCATTTTCTCA 1202 37 100.0 32 ..................................... TAACGAGAAAGCTATAGCCATTATTGGAGAAC 1271 37 100.0 32 ..................................... CAAAATAAAAGTTCCAAAGAAAGCTACATCTT 1340 37 100.0 37 ..................................... AATATCAAAGTATTGAGAATTCCCAAGGCTTAACCGA 1414 37 100.0 28 ..................................... GCCAACCTCACTGATAATGGGGTTGGCT Deletion [1479] 1479 37 100.0 38 ..................................... TTTTGGAGAATTTCTATATATCCATAAATTTGAAAATG 1554 37 100.0 36 ..................................... TACTAAGATTAATATTTAAAATGCAATGAAGTAATT 1627 37 100.0 35 ..................................... CTCAGGATTACCCGATTAATAACATTTTAAATTTT 1699 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 24 37 100.0 35 GTCTTAATCCTTGTTGTGTTGGAAGATGCTCACGAAG # Left flank : GAAGCGATTATGAATAACGATATTAAAAACATTTACAAAAG # Right flank : AGTAAAGATTTAGAAACCCTTTGTATAGCGTATGTATGCGAGCATAAGACATTAAAGAACGCTTTGCATTAACAGAAATTAACTGCTTTAAAAGCGGCTGCAAAGTTACACATTATTTTTCAGAAAACCAAAGAACGGTTAGTTAATTCTTACTTAAAAGAACAACATATTACAGAAGGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTGTTGTGTTGGAAGATGCTCACGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 550-43 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAJY01000090.1 Prevotella falsenii DSM 22864 = JCM 15124, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 549 47 100.0 29 ............................................... AATTACCTTGTTCTGTTTTAAACTTAGTA 473 47 100.0 29 ............................................... TAGATCTATTATGAATACTATGTTGTTCT 397 47 100.0 30 ............................................... AATGTACGGAATCTCCGCCTGAAGATAAAA 320 47 100.0 30 ............................................... CCGCTGCGGAATATCATGCTTTGGTTGTAA 243 47 100.0 30 ............................................... GTATCGGTGTGCGCCCCACTCGTTGATGAA 166 47 100.0 30 ............................................... TCCTCGTCCATTAACGCCTGCATCTCGTCG 89 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 7 47 100.0 30 GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGCAAATACAAC # Left flank : ACAACTGCTACACCACTATCAGAAGTACAGGCG # Right flank : CTCCTTAAAGGAGAGAAGATACACACTATCCGTTGTGATTAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGCAAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 1731-2642 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAJY01000068.1 Prevotella falsenii DSM 22864 = JCM 15124, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1731 37 100.0 34 ..................................... ATACGCCCAATGCCGGGAGGAGTGGAATAACATG 1802 37 100.0 33 ..................................... TCAGTGGTAGCGGCGATACTCTTTCGCTTTCTT 1872 37 100.0 31 ..................................... AATTTAAAAATTATTTTATGGAACTTATAGA 1940 37 100.0 33 ..................................... TATGAGAACTTCAAAGATACAACTCGGCGTAAA 2010 37 100.0 37 ..................................... TTTAAAAATAAAAATTATGAGAACTTCAAAGATACAA 2084 37 100.0 35 ..................................... AATTTGTATTGGGTCGTACTCTGCAACAGTGGCGT 2156 37 100.0 36 ..................................... CACAGAGGACATAAACGAAGGTATCCGCCTTCAAAA 2229 37 100.0 37 ..................................... AAGAGTTACTTATCGTATTACCAAAAGTCGGTAAATA 2303 37 100.0 39 ..................................... TTAAAAATGGCAAATTGGGCAAGTACAAGCTACCGTATT 2379 37 100.0 41 ..................................... TTTTAAATTATAAATTATGGAAATTTTTCAAGAAAATGTAG 2457 37 100.0 35 ..................................... ACCAATATGGAGCATATAAGAATGGAATACTGTTT 2529 37 100.0 40 ..................................... ATCTAAAGGTTGGCGTTATGGTAAATTCTTCCGGGCTAAA 2606 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 13 37 100.0 36 GTCTTAATCCTTGTTGTGTTGGAAGATGCTCACAAAG # Left flank : AGACAAGTTGCGTGCGAAAATTTACCATGAGGAGAGAGACATAAACAAGCGGAAGGTAATCAAAGGCCTGCGCCGGCTGCTGCTCTGTAATGGAGAGGACATTTATGACAACAAGCATAGGGAGCGACCGGACAACGCATTGAACATGAACAGACCATTGGCTCAGGCCTATTACCTCAAGGAAAGCATGAGGGAGATATGGGGACAGGCGGACAAGGCTACGGCAAGCATCGTTATTGATGACCGGATAAAACAGGCTCATAGTACAAAAGTGCCCATTATACAAAAGGTTGCCAATACAATTGCCATGTACAGGTATGGCATCCTTGCGTGGTATGACTGCCACATATCTACGGCTAAAGTGGAAGGCATTAACAACAAGATAAAGGTTCTCAAGAGAAATGCATATGGATTTAGAGACGAAGAGTATTTTAAGCTCAGACTATATGCGCTACACGAAAGAAACATCACGGCATTTGTCTGATGAACCAATAAAAAAG # Right flank : CGAAGGTATCCGCCTTCAAAATTATGTAACCAATTGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTGTTGTGTTGGAAGATGCTCACAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 35-2078 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAJY01000073.1 Prevotella falsenii DSM 22864 = JCM 15124, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 35 47 100.0 30 ............................................... TGCATTGCAGATAGCACAGACTACTATCGA 112 47 100.0 30 ............................................... CTAATGCTCCTGTTGCTATTGCGATTGCCA 189 47 100.0 30 ............................................... TGAATTTGCCGAGTTTGTCAGAATGAAGCA 266 47 100.0 30 ............................................... GTAGGGTTTTGCAATACTATTGAGAATGGA 343 47 100.0 30 ............................................... ACCGTTGCGCATTTAGACTTATTCAGATGC 420 47 100.0 30 ............................................... CTATTTGTCGCAATTGCTTAATGGTAAAAA 497 47 100.0 30 ............................................... TTTACAGAAGATAGTTCCCGATTATACGGC 574 47 100.0 30 ............................................... TCGATGTCGCGCAAGGTTTCCGCGTCGAAT 651 47 100.0 30 ............................................... TGATATTCAAGAATACATTGACGGTCGAAA 728 47 100.0 30 ............................................... GTTGATTACCAACTCTTTCATATTTTATTA 805 47 100.0 30 ............................................... TCTACACCAAAATAGTGTGTCGAACATCCC 882 47 100.0 30 ............................................... AATATATCTAAATTGTAAAGCTCTATTGGC 959 47 100.0 30 ............................................... CTCGCCGTTGGCATTTGTACTGGCTCATCA 1036 47 100.0 30 ............................................... GCTTTACGTTTTGCGCCGTAAATTGACAAC 1113 47 100.0 30 ............................................... GTTTGCCGGATTTATAGAACCGCAGACATA 1190 47 100.0 29 ............................................... CTTTAGATGTATGATTTTTCACATAGATA 1266 47 100.0 30 ............................................... ATAGCATCGGAATAGATGTCAGCACGCCCA 1343 47 100.0 30 ............................................... TCGCTTTGCTTTAGAGGTGTGCTGGCTTGG 1420 47 100.0 29 ............................................... TCTAAAAAAGATAAATAAATAACATGGAA 1496 47 100.0 29 ............................................... ACAATCTCAAAGCCATTCGCGACGAGATA 1572 47 100.0 30 ............................................... CACTGTCATTTACAACGACTTCGACGGCTA 1649 47 100.0 30 ............................................... GAATAAACGAAAGCAAGAACCTATTATAAG 1726 47 100.0 30 ............................................... AACGGCTTCGGCATTTGCGATGTTCAGAAG 1803 47 100.0 29 ............................................... CTCCAGACCGGCACTCACCATCCTCAGGC 1879 47 100.0 30 ............................................... CAAAAATAAAAAAGTAGATACTTTATTGTA 1956 47 100.0 29 ............................................... TAAAAAATTCCCAGAACTTGCTTTCCACA 2032 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 27 47 100.0 30 GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGCAAATACAAC # Left flank : ACAACAAATTAATTTACAACGAACTTTGCAAGTAG # Right flank : TTGACGTATTTCTCGTCTTTGCCGTTATACGTTGTGATTAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGCAAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 3278-2001 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAJY01000064.1 Prevotella falsenii DSM 22864 = JCM 15124, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 3277 47 100.0 30 ............................................... TCGACGTGGCGAAATTACCATTTACCCCCA 3200 47 100.0 30 ............................................... CCACTGCTTAAATTTTGTATTCTCTTTCAT 3123 47 100.0 30 ............................................... GAGATTTCGCAAAGATACTGCGACATTTCC 3046 47 100.0 30 ............................................... TCTTGGCAACGATGGAAATTTCCGTGAGTT 2969 47 100.0 30 ............................................... TGAAATATCAACCTCTCGCCGTCGCAGGTA 2892 47 100.0 30 ............................................... TGGAAGTAACCAAAGTGGAAAATGCCGGGG 2815 47 100.0 29 ............................................... AGTTACCGCTAAATACAAAGGACATACAC 2739 47 100.0 30 ............................................... CTGCAGGAGGTGGAAACGCACCTATATAAA 2662 47 100.0 30 ............................................... GAAAGCCGAGAAGCACATCTACCAGTGCTA 2585 47 100.0 30 ............................................... TTTTAACATTTGAAACCTTAACTGTCGTTG 2508 47 100.0 30 ............................................... ACTATCTTTTTATAGTCATCTTCTGCGCCC 2431 47 100.0 30 ............................................... GCGACGGATTTGCGCTTCGTTCTTATCGGG 2354 47 100.0 30 ............................................... GGAAAAACCGACAACGGAAGCTGCCGACTT 2277 47 100.0 29 ............................................... CTGGAATCCTCACAATGGTACAGCCCGGC 2201 47 100.0 30 ............................................... CCCTGCGTCTGTATAGTAAACTCTTTAGCA 2124 47 100.0 30 ............................................... TAACGGTGAGAATGCTGCAAAAGAGAAATG 2047 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 17 47 100.0 30 GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGCAAATACAAC # Left flank : ACAACACCCGGTGGCAACAAGAAGATGATAGCC # Right flank : TCAAGTAGTTTAAAGTAATGAGCATCAGCGTTATTACGAAATCTTAGAGAAAAAGAAAAATGCAAGCAAAAATAAAGTTCCATTCTTAACGGATGGAACTTTATTGTTTCTAAAAGATACGTGACTTCGGCATAAGGAGCAGGTTAAGCAAGCTATTTCGCAGATATTTTTAAGCAAATCCATTGATGAAATAGTGAAAGTTTTTCTGTTTTACCTTGTAAAGATAACTTTCTTAAAAGTGATAACTATTCTATAGGAGGTGTGTCAAAATAGGCCCCCTCTTCTTTTTTTGCACAAAGTCCCGACTTTCCCAAGCCGGGGCTTTGCTATTTCCTAAAGTTTTTTATTGCTGTCTGGTAAAACTTTTATTAATATCAACAATTAGGGCTGACACTTCTCACGATGTATCAGCCCTTTTGGTTATCTTTGTTTTTGGAAAAATTTATAACCATGAGCAAAGATAGTCATTTTAGCGGACAGCCGGTATATAGTCAAGTCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGCAAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 65-803 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAJY01000086.1 Prevotella falsenii DSM 22864 = JCM 15124, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 65 47 100.0 30 ............................................... TTAGCATTTGCCTTTATGGTAATTGTTGTA 142 47 100.0 30 ............................................... GATGCCCATTCGCAAAGCGTACCAATCTAT 219 47 100.0 30 ............................................... CATTCGTGCTTTTTTATAAAGCCGCTTGCG 296 47 100.0 30 ............................................... ATTGATACCGATATTGAGCCATACCTTTTT 373 47 100.0 30 ............................................... TTGTACGTCTTCTTGATGTCAAGCGTCAGT 450 47 100.0 30 ............................................... ATATAGTTCTTTTCACCGACTTCTTGCCGA 527 47 100.0 30 ............................................... TATCACGCCACGGGGCGACACAGAATGAAT 604 47 100.0 30 ............................................... TATTTGCAATATAAATAGCAAGTATGGTAA 681 47 100.0 29 ............................................... ATTCAATGTACGTCCGTCCACTATTTTCG 757 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 10 47 100.0 30 GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGCAAATACAAC # Left flank : GTAAAATTAGTATCTTTGCATTGGCAAATACAACACATGAAAGTAAAATTAAACAACAAAATTGG # Right flank : AGCTCCTATTCGAAGCCGATCTCCATTCTGTTGTGATTAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGCAAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 92153-91459 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAJY01000004.1 Prevotella falsenii DSM 22864 = JCM 15124, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 92152 36 97.2 30 ..........................T......... TTGCCTACTGTACACGCAACAACCAGACGG 92086 36 97.2 30 ..........................T......... CAGTTATTTGTTCTTTATTTTCTTCTATAT 92020 36 100.0 30 .................................... ATATCTACAATTAAGTTTTGACTTTTTGGT 91954 36 100.0 30 .................................... CCATATTCGCTGCTTATCTTGTCATAGATA 91888 36 100.0 30 .................................... ACACACATCCCAACTTACAAATTCTTGTAA 91822 36 100.0 29 .................................... TCATAAGGAGTAGCGTAAAAAGTGCCATC 91757 36 97.2 30 ............................T....... TCGTATTTGGCGCGGTATTTTAGCCTCGTC 91691 36 97.2 30 ............................T....... ACCATTGAACGCGAAACGCCGAGTGCCATT 91625 36 94.4 29 .....................A.G............ ATCATACAGAATTTGCGTTCCATTTTTTA 91560 36 94.4 30 .............T................G..... ACCTTTATGTGCATTTACCTGCCGTACATA 91494 36 97.2 0 .............T...................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 97.7 30 GTTGCATCTGCCTCCTTTTTGCAAGGCACAAACAAC # Left flank : TTTGAGAATATCGAACGTGCAAAGTATGAAGCCATACTGAAGGCACACCAAAGCGTTTATAAATTGCTTAGGTTTATCACAGATACGGAAAACGACGACTGCATATTGGTGTGGGAGGAGCCTAAGGGCGGCGGAGAGAAAGCTTATTATTTCAGACAAGCCAATATACGCAAGTTTATAAGAGAGCTGACCGAAGAGATATACAACAAAGGCAATGGCATTTTTCTATCAAAAAAGACAATGTCGCTGATATTTGAATATCGAACTCTTGTCTATGGGCTGTTGCTTACTGCCAAAGACAACCCTGCCGAGGCGATAGAAATAACGAATAAGAAACTGGCAAAGAGAATGATAGAAATTCATCAGAGCCTCTCAATACAAATCAGAAAAGATAGAAATTTACAACAATGAGATTTACATTTCGATTAATCGAAAAGGAAAGAATTACCCTTGAAGAAGAAAGGCAAAGCATCTTAGAAATAGGCATTTAAGCCAATTTC # Right flank : GCTTTAGAAAACAAGTGAATGAAGTAGGGGGAGTAGAAAATGTAATGGGGAACAAGCCTTTTTATGGGCGGAAAAAGGCGATAAATATGTAAATGTTTTTCGCAAGCAATGCTGTTGTGTAACTATCTGTTTATCAGCGCATTCAGAAACCTATTGTTTTGCGTTCCAAAACCGTAGGTTTTGCACGGTAAAACCGTATGTTTTACAACGCAAAACCTACGGTTTCGCAACGCCAAAGCGATTATATCACTTTTTAACAGAATTATCTTTACAAACTCGGGGCGGTTTCTTTGTGCCGGAGTAAGGGGTTATTGGGACTTTAAAAAGAATGGAAATGCCGTGCGAAGTGTTTTTCTTTCCTCTGCTTTCTTGAGCTATAGTGGCTTTAAAAAGAAATGAAATGCCATGCGAAGTGGGTTTCTTTCCTCTGCTTTCATAGGTTATAGGAGTTTTAAAAAGAAATGAAATATCGTGCGAAGTGGTTTTCTTTTCTCTGCTTT # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTCCTTTTTGCAAGGCACAAACAAC # Alternate repeat : GTTGCATCTGCCTCCTTTTTGCAAGGTACAAACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //