Array 1 6049-7297 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYCD01000009.1 Escherichia coli strain B042f NODE_9_length_131035_cov_143.162, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6049 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 6110 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 6171 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 6232 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 6293 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 6354 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 6415 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 6476 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 6537 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 6598 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 6659 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 6720 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 6781 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 6842 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 6903 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 6964 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 7025 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 7086 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 7147 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 7208 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 7269 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43056-44530 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYCD01000026.1 Escherichia coli strain B042f NODE_26_length_64214_cov_150.096, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43056 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 43117 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 43178 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 43239 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 43300 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 43361 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 43422 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 43483 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 43544 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 43605 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 43666 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 43727 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [43751] Deletion [43768] 43769 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 43830 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 43891 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 43952 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 44013 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 44074 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 44135 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 44196 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 44257 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 44318 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 44380 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 44441 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 44502 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //