Array 1 3669683-3669414 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETUZ010000001.1 Klebsiella oxytoca strain CPO118 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3669682 28 100.0 32 ............................ AACGGTGACGATACTCAAACTCTCTCACTCAC 3669622 28 100.0 32 ............................ TGAATCCATACATGGGCCCGCTGCGGCTATTG 3669562 28 100.0 32 ............................ AGAGAGGTGCTTCCGCATGTTCCTGATGCGTG 3669502 28 100.0 33 ............................ TGTGTATCACCGAACGCAACAGCCTGATCACAA 3669441 28 92.9 0 .........................TG. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAAAGGATGGCGTTGCGTCAGTCGGGTACAGGTAAAAAGCAGCCCCGAGCGGCTGATGCGCCGCTCGGTGAGAAAAGGCTGGCTGACGCAGGATGAAGCAAATGAGCGATTGCTTAGCATGCGGGGAGAGTCGACAGCGCTCCCCTGGTTGAATATGAAAAGCCTCTCAAATGGGCAGAAGTTTCCACTATCTATTTGTCACGGTGAGCTGCTGGCGCAGCGCGTCGCGGGAACATTCAATAGCTATGGGCTGAGCCATATCGCGACTATCCCCTGGTTTTAGCATGTTGGTGAGAGTTTTTTGTCGAGTGCTAAAACAAACCATAACCGGCGCGGTCTTTCGCGCCGGTTTTTTAATCGCTAATTAAAACCCTTTTTTATGATGAATCTCTATCTTATTGATTTTAGATAGTGATTTTATAAAAGTCGGAAAAAGGGTTGTGAAGAGGGGAAGGCGTTTTTTGGCTTTTTTATCAGATGGTTGTAGTGGTTAGGCTTCA # Right flank : TCGTGGCGGTTACGGGCGCAGAGACAGGGCCGTCAAAGCCGAAGAGGGAAGCGGCGTGAGAATAAAAGAAATGAAAAGACCGGGAATTATCCCGGCCTTCAGCATCTGGCGCGTTAAGCGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATTGCCCGTAATTCACGCGGATAAACCGGGCGACAGGCGCAAACGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3680124-3678112 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETUZ010000001.1 Klebsiella oxytoca strain CPO118 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3680123 28 100.0 32 ............................ CTGGAAGAATGTCAGAACTGGCAACCCGTACT 3680063 28 100.0 32 ............................ AGGCGCTCACGGCGAGGCCAGTATTTTGCTGC 3680003 28 100.0 33 ............................ CGCTACAAGGTATCTTCCATGATCGATCGGAAT 3679942 28 100.0 32 ............................ ACAACGCACTCGAGCTCTTTTGCAAGGTTCTT 3679882 28 100.0 33 ............................ GATGATAATTTCTATTCGTGGTTTGGCAGGGAG 3679821 28 100.0 32 ............................ ATGAAGGAAACGGGGTTCTCCAGTCAGACAGC 3679761 28 100.0 32 ............................ GTATACAGCCATCAGCCTCTGACGGGCCGGGC 3679701 28 100.0 32 ............................ GCGTGATGCGCGGTTTGCTTCCAGCAAGATAG 3679641 28 100.0 32 ............................ ACGCATCCCCCGCAGCTCGTCGGCGCTGAAAT 3679581 28 100.0 32 ............................ GTTTACGCCAACAAAATTGAAGGCGATGTGAT 3679521 28 100.0 32 ............................ AGTGGGTTATTAAACTGTTTTTTATAGTAAAA 3679461 28 100.0 32 ............................ GCGTACGCTCCGCGAACCTTACCAGCAAGTTC 3679401 28 100.0 32 ............................ TACGACGACCTTTTAAAAGCTCGCGTTATTAT 3679341 28 100.0 32 ............................ AGGAGCGGGTCATATTCCACCGTCGCGGCTTT 3679281 28 96.4 32 ..........T................. TCAGTGATAGATATCTGTAACCGGGCGCTGAG 3679221 28 100.0 32 ............................ TGCAGCAGCGGGTAACGTTCCTGACGACGACC 3679161 28 100.0 32 ............................ CAATACTCACCATTGATGAGCAACGATAAAAA 3679101 28 100.0 32 ............................ ACAAATCTAGTCACTATATATCAATTACTTAA 3679041 28 100.0 32 ............................ CGGCTCCAGTTCCCTGATGTGAAAGTTAAACC 3678981 28 100.0 32 ............................ CGGCTCCAGTTCCCTGATGTGAAAGTTAAACC 3678921 28 100.0 32 ............................ TGAAAAACGAGGTCCAATATTGGCCCATGTGC 3678861 28 100.0 33 ............................ TCGACGCGCTGGCCTCGCTGCTGATTTCTACGA 3678800 28 100.0 32 ............................ TACCGGACAACGATCACCCATTGTCATGTAAC 3678740 28 100.0 32 ............................ TGTAATGGCATCGGGAGGCTGTCATGTGGATA 3678680 28 100.0 32 ............................ GGCTGCGTCGGGACCCATCACATCGCCAGCAG 3678620 28 96.4 32 ........T................... CCTGGCCCCGGCAGTATCTATGATGGTCAGGG 3678560 28 100.0 32 ............................ GGAAGAAATCACCGCCATGCTTACCGCAGGAG 3678500 28 100.0 32 ............................ TGCCGTGGCGGGGTTGGCTCCAGCCACAATCC 3678440 28 100.0 33 ............................ TGCGGCTGCACGACCAGCGTCAGGGAAATCACT 3678379 28 100.0 32 ............................ ATGCACCGGTAGAAGAACGCTGATCAATTGCC 3678319 28 100.0 32 ............................ GTAAAGACGCTACCAGGCACATCGCTGAATAA 3678259 28 96.4 32 ............G............... TCGACATCGCCGAGAGCGGCGTAGCCGTATAG 3678199 28 92.9 32 ............G.......A....... TGCCCGCCGAGCCGGAAAGCGACAGCGGTAAA 3678139 28 92.9 0 ....T.C..................... | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTATCCACCAGGTGGTGGATAAGTTTATCGTTGAGCTGCAGGTCCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTAAGCCAGGAAGCCCGAGATTGGCTGGCCGAGAAAGGCTACGACCGGGCCATGGGCGCGCGTCCGATGGCGAGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCTAACGAGCTGCTGTTTGGCTCACTGGTTGACGGCGGTCAGGTGATCGTTGAGCTGGACAAAGAGAAAAACGCGCTGACCTATGCCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCGGCACATTAAGTCGCTTGCGTGAAACGTCAAAACCGGCCTCAGGGCCGGTTTTTTTATGCCGATGTCCTGGACCCTTTTTTATTCCCCTTTTTTAAGCTATTGATTTTATTAAAGAGAAAATCTGGCGTGAAATTATGGTAGCAGAGAGGGGCTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTCGTTCGTTCA # Right flank : AGAGCTTGCCCATACTGCGGTGCAGGCTAAAACGATTCTAAAGAATTTGCCAAAATAATAGGCTATTTTGCAATTTGCGATGAATGTCAACGTATTACCTCTAATATACTGTTTTTATAAACAGCTATCGACACTGAGCCACAGGATGTGACTATGCCCGCGAACTATATTGCCCCGTCGGATTTAAAAACGATTCTCCATTCGAAGCGCGCCAATATTTATTATCTGGAAAAGTGTCGGGTTCAGGTCAACGGCGGCCGCGTGGAATATGTTACGAGCGAGGGAAAAGAGTCATTCTACTGGAATATCCCAATAGCAAATACAACGGCTATTATGTTGGGAATGGGAACCTCCGTTAGCCAGGCTGCAATGCGTGAGTTTGCCCGAGCGGGCGTAATGGTCGGTTTTTGCGGTACGGATGGCACGCCTCTTTATGCTGCTAATGAAGTCGATATTGACGTTTCCTGGCTGTCCCCGCAAAGCGAATATCGACCAACTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3693833-3693383 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETUZ010000001.1 Klebsiella oxytoca strain CPO118 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3693832 28 100.0 32 ............................ CTGTAGTTATCCGCATACGACTCAAACGATCC 3693772 28 100.0 33 ............................ ATCGAACGCCTGGACAACAGCAACGATGCCAAC 3693711 28 100.0 33 ............................ GGTAATCAGCGACCGGCACCACATCAACGCCGA 3693650 28 96.4 32 ...............A............ AGAATCCGCTGACCCAGCTCATCAGGTAACGC 3693590 28 100.0 32 ............................ GCGAACTGACCCATGCCGTGATGCGTGATCTG 3693530 28 100.0 32 ............................ TCCACAGAATACGCCTGTGTAAATCCGATCAT 3693470 28 100.0 32 ............................ GGATGACCGATCGCATCGGCATTTTTGAATTG 3693410 28 82.1 0 ............T.C.....T.C..T.. | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCATCAGCAGCATGCTGGTGGCGAAAGGTCTGCCGGGCTTTATCGCTTATGGGGTTTTAGCTGGAGAAGTGGTTGCGCCATGTCTGCTGATTGTGGGGATCCTGACGCGCCCTGCGGCGCTGGTGCTGGCATTCACGATGGTTGTGGCCTGGCTGATGGTCGGGACGGGTAAAACCTTCGCGCTGGATGCGGTAGGCGCGTGGGCGATTGAGAGTCTGGTCTATTTCTTTGTTGGCGCGCTGGCGATTGCCTTCCTTGGGGCAGGGCGCTATTCCATTGGCGGAAACTCGGCCTGGCGCTAAGTGCACCAGGATTTTCTGCCTCACCCTGGCCACATCCTGTTTGCCGGGGTGTCGCCGCTCGTTTTTCAGACCCTTTTCTGGGGCGTTATTTTAAGATATTGATTTTTTAATATTTTTATTCTTGCCTAAAAAAGGGTAAAAGGGCCTTTTATTGATTATTGCATGATAAAACAATAAGGCAGGTGCGCCGGGCTAGT # Right flank : GAGCCATGCTACCCGACGATTACCGCGTAGCATGGCCAGCAACAACATTAAGCCAGTACCAAATCTCCCTGCGGCTGGCAGGAGCAGGCCAGCACGTAGCCTTCAGCGATTTCCGCATCGGTTAACGTCATGGTGCTGCTGACGGTATATTCACCGGAAACCACTTTCGTTTTGCAGCAGCCGCAAACGCCAGCGCGGCAGGCGACGGTAACCGGCACCTTATTGCTTTCCAGCGCTTCGAGCAGCGTGGTGCCGACCGGGGCATAAAACGTTTTCGCCGGCTGCAGTTTGGTGAACTTCAGACCGCTGGTGGCCGCGACGGCGACTGGCGTAAAGAACTGCTCTTTAAAGAAGCGCGTCGCGCCCAGCGCTTTCACTTCCTGCTCGACCAGATCCATATACGGCGCCGGACCGCAGGTCATCACGGTGCGCGATGCCAGATCCGGCACGCTTTGCAGTAGTTCAGTCGTTAAACGTCCTGCCACGAAACCGTGGGTAGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //