Array 1 51922-50714 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXCA01000021.1 Clostridium argentinense strain 113/29 contig00021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 51921 30 96.7 35 ...............A.............. GTGTAAAGAACTAGTAAAGCTAATAGCAGATGCAG 51856 30 96.7 35 ...............A.............. TGACTATAAACATTGTTTTTATATTTAAAATAAAT 51791 30 96.7 35 ...............A.............. TGTTGCATTTTTTCTTTTAAACCTTCTACCATTTT 51726 30 93.3 37 .......T........G............. AATTGATGAACTGAACATTTATATTTTTTGCAATAAA 51659 30 100.0 36 .............................. ATGAGAGGTAATTCGAAGGCATTAGGAATTGAAAAA 51593 30 96.7 35 ................G............. TAGTCTTTTGAATAACTGTGCAATAATTCTATAAT 51528 30 93.3 36 ...............AG............. ATATTTCCAATTTGATCTTGAAGTTTTTTAAGTGCA 51462 30 93.3 35 ...............AG............. GTTAGTGCTAAGTCTATTCTATCTTTTAAATGTTC 51397 30 96.7 35 ...........G.................. TCAGCCTGTTTCCTAAAATCATTAGCATTTCCAGG 51332 30 100.0 36 .............................. TTAAATGTAAGCAACTATGTAAGTTTCTTTCTTTTC 51266 30 93.3 37 ...............AT............. TATTTAGGCATTGACACGTATACCATAGGATTTTCTT 51199 30 90.0 35 ........A.......G.G........... GTAGTTTCTAAATCAATTTCATCATAACCAATAAT 51134 30 93.3 36 ........A......A.............. CCATTTGTAAAACATCCAATTCCTTTATGAATCCAT 51068 30 90.0 36 A..............AT............. AGGATAAGTTTTATTGTTAGAAGTGTATTATAATCT 51002 30 100.0 35 .............................. TACTCTTACCACCTTTGTATTTAAAAGTTGAGCAA 50937 30 100.0 34 .............................. ATAACTACTGTAGTAACAAAGTCTTTTAAATCAT 50873 30 96.7 35 ................G............. GAGGATAGCAACATAAAGTCTCTACTCTGAATACA 50808 30 90.0 35 A.......G......A.............. AACATTGCCATAGACACTTCGTCTAAATTACAATT 50743 30 76.7 0 A..A...........AT......A....TA | ========== ====== ====== ====== ============================== ===================================== ================== 19 30 94.4 36 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : GACGTCCTAAATCTCTAAGAGGTGTATCGCCATCGCCATCAGCGACAGCAGCATAAGTAGTTGCTACATTAGCACTTGTAATCATAGTGATACCTAATAATGTACAAGCTAAAACTTTTTTTAATTTCATTTTACTTTCCTCCAATAAACTAAAAATAATAAAAATAGTATGTGTTAAGCTCAACATGTACTATCTTACCATAACTTATAAGTAATGTAAACATTTACCATAAATGAAATTAAATATTACAAATGCACTCTCGAAATTTTTGTTTCATAAAAGGAAAACTTAAATAGTTGTAGAATAAGTAAGGTAAAGATTATTTTACCAACCATCTTAAATATTAAATACCTCCTAACAAATTGAAAATACAGGCTTATGAGGTATTTTTTAAAAAAATTTCTAAAAACATAAAGCGGTTGGTAAAAATTTTAATAAAGCCTTTATTTTCAATAAGCTAAAGGATATAATGAAAATAAAGAATGGCTTGATTGCAGTA # Right flank : AAAAGGACTATTAGGATTGTGCCTAATAGTCTTTTTTCATTTAAAATATATTAATGTAGTGTTTTCGTTAGGAGCTTTCTTATAATGAATTTATATTTTATATTTATCAATCTAATGATAATTACTTTTACTGTGTAGGCATATATAAATTTACTATTAAAAATCTAAATATTTTTTATCTACATTCCATTTATGGATGTTATAAAATAAGATGTCGAATAAAACTATATATAATATGTAGGAATTTCTTAAATATATTTGATTCTTTTAAATAATAGACGTATAATATGCGTATAAAGTAATTTAAAATAGTCCTATAAATGAATGAAAAATTTATTGGTATGTGTTTTTAGAAATTTACAAATAATATAAAGGTTTGAAGTTAGCAAACCGTTGGTATTACTCAAGTAGATACCATAAATAAATTATTCGGATATACCATTCATAATGATAAAGGTAAACCTACAAATTCTGAATTTATTGCAATGGTTGCAGATAAG # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 102172-97810 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXCA01000013.1 Clostridium argentinense strain 113/29 contig00013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 102171 29 100.0 37 ............................. TATTCTTTATAGCTTTATCACAATACTGCTCAATATC 102105 29 100.0 36 ............................. AAAGTATAAGCTAAATCTTCATATCTTTTACGTAAA 102040 29 100.0 36 ............................. GAAACAATAAAGTTTTATGGTACTAACACTTATAAA 101975 29 100.0 37 ............................. TTTACAGGCGACTTTGCATATTTCTATGAAGAAATAG 101909 29 100.0 37 ............................. TAGAGATATTGAAATTAGTAGATTGTAAATAAATAGA 101843 29 100.0 36 ............................. TAGATTGGACACAACAAAATGTAATGCCACAAGTAC 101778 29 100.0 36 ............................. ATTGAAATAACGAAAGAAGAAGCAAAAGAAAAACGC 101713 29 100.0 36 ............................. TTAGATGGAGAATGCGGGAGTGTTGAAGGAGAATTG 101648 29 100.0 36 ............................. ACGAAAAACAAGAGCTAAGTAGAAGAATAGTTCCAT 101583 29 100.0 37 ............................. TTGAAGTTTGTTTATATTCCTTTGCCAACCGAACAAC 101517 29 100.0 37 ............................. GCTAGAACTGTAGTTGAATGGTTTATAGAACAGGCTG 101451 29 100.0 36 ............................. TTGAAGACATTGGGTCAATGAAGTTATACCACAAGA 101386 29 100.0 35 ............................. TATCATAGGCCTAAAACAAAAGAAGAAGCTTTAAA 101322 29 100.0 36 ............................. CAGTTTGGAGAATAAAGGTAGAATGGCGGTATTATT 101257 29 100.0 37 ............................. CACATCTACGGTTAATAGCCCAACAATAACAGTCAAC 101191 29 100.0 37 ............................. AAAGAAATAAATTCTAAAGGTACTGTTAAAGTAGCAC 101125 29 100.0 36 ............................. GATTTACCCGTTCCAGTGTCCCCATCAATCAATAGA 101060 29 93.1 36 ......C.........A............ TTAAAGAAATAACATACATATTCAACTTCCTTATTA 100995 29 93.1 34 ......C..........T........... AGCACAAGGAACGCATGAAGAAGTGCTATGCATG 100932 29 96.6 36 ....................C........ GACACTAAGATTTTTCATAAGTGTTGTAGGTTCTTT 100867 29 93.1 35 A...........................C ACAATTTGGTGTCATGCATATGGCTATAAAAAATA 100803 29 96.6 36 ......C...................... TAGAATAAGATCTAATACCTTCCTCTTGCCTACAAT 100738 29 93.1 36 ......C.............G........ TTCCCTAAAACTACGATACTAGTTTCCTTGTCTTGT 100673 29 89.7 36 ......C.............G.......T TAGTATAATTTGTAGCAATAAGAAAATTATACTAAA 100608 29 93.1 36 ....A.C...................... TGAAAACACTAGGCTTTGCCTAGTTCACCAAAGCTT 100543 29 93.1 35 ......C..........T........... TGTTATGATAGAAGTAGTAGCAGATTAACATATTG 100479 29 86.2 36 ......C...........A......C..T GAAGTTTGGGAGATAGTTAAAAAAGCTGTTTTGTTA 100414 29 89.7 35 ......C...........A......C... GTAGCAGTTCTGTAAAGTGCTTATATAAATCTATC T [100386] 100349 29 93.1 37 ................AT........... ATTCAAGAAAGAGTGCAAAATTGAAATAATAATTATT 100283 29 89.7 35 ......C........A............T CAAATTATTGCTATATTACAAGCTTGGGTTTCTGC 100219 29 89.7 37 .C....C.........A............ TATACGTGTTCAGAAGATGTTAATTTAGCCTTGGCTG 100153 28 93.1 36 ......C....-................. CCGAACAAAACCACACTCTTCGTGCTAGGCATAAAG 100089 29 86.2 9 ......C..........T..G.......T CCGAGTTAG Deletion [100052] 100051 29 89.7 33 ......C....G......A.......... GGCTTTAATACTCAGAATATGAGTCTAATTTTT 99989 29 96.6 36 ............................T TATGAAGTAGTATGTTTTTTCGATAGAGACGGTAAT A [99978] 99923 29 96.6 37 .................T........... ATGTTATGTTGAATAAATCTGCGCTTGAAGACATTAA 99857 29 86.2 35 ......C..........GA......C... GTAGCAATTCTGCAAAGTGCTTAGATAAATCTATC T [99829] 99792 29 89.7 37 ................AT..........T ATCATAAAATGATCTCTTTTAAATAAAAAACTATCTG 99726 29 93.1 36 ......C............A......... GATGCTCCAAAGATAATATCTGTTGAGCAAGATAAA 99661 29 96.6 37 ............................T TGGATTTGGGGAATAGGTGCTGCAACATATGCTGGGG 99595 29 89.7 35 ..C...C.............C........ ATAAGTAAAGAGTATACATATAGGATATTAAAAGA 99531 29 89.7 36 .....GC..........T........... AGTGGAAAATCATGATTGATATTTATAACCCTAAAA 99466 29 93.1 36 ......C......G............... GTAAAATGCGTTAAGTCAACTTCAAGTAATACCAAA 99401 29 93.1 36 .C....C...................... ATACAATTTTGTATTTTTTTGTTAAAATGTGTACAG 99336 29 89.7 36 ......G.........A..T......... TGAAAACACTAGGCTTTGCCTAGTTCTCCAAAGCTT 99271 29 86.2 36 ......C...G..C...T........... ATCTTATTGTGGGTTTAAAATGGCTTAAATTCAACA 99206 29 93.1 35 ...C..C...................... GAAGAGGATATAAGGGGATACTTAGCAACAAAAGA 99142 29 100.0 36 ............................. GAGCGGAATTCGTTTAATTGGATTATAAATAATATA 99077 29 100.0 36 ............................. GACACGTTATTAACTGTATTAAATCTTTAATATTTG 99012 29 100.0 35 ............................. CTAGCTAAGTCTTGTATCAGCGTAGCAGGATACTT 98948 29 100.0 36 ............................. AAGAAGAAAGATGGAATTTATGCAATAGTAATGGAA 98883 29 93.1 35 .....GC...................... TAGCTCCTTGCAGTTTGTTTATACTCCTTTGCCAT 98819 29 93.1 36 ......C.............C........ GCAAAAGCATATTCAAATTCCTTGTAAGCGTCTAGG 98754 29 89.7 36 ......C..........T....C...... TATTATGCTAAAAAATATTAGAAGTAGAAAAAACAT 98689 29 93.1 36 ......C...............C...... AAGTAAACCCATCCTGCCCCGAAAAATAGTTCTACG 98624 29 93.1 37 ......C......A............... GAAAAGAGTAAGATGACTTGGAGTTTTGATAGAGTTG 98558 27 82.8 39 ..C...C..............G.....-- GGAGTGCTGCTACTTTTTCTATAGTCCACCCCTTCTTTA 98493 29 96.6 36 .................T........... TTATGGATAGAAATGTTGGTAGAAGCAATGCACAAT 98428 29 93.1 36 ......C........C............. TAGCTCTAATAATTTAAATCAGTAATAAGGTTTAAA 98363 29 89.7 36 ......C........C.T........... GTATTGAAAAAGAAGTAAACATACAAATAGGAGCAA T [98335] 98297 29 100.0 37 ............................. ACTGTAATTAAAATCAAACAACAATTAGACCCCAAAT 98231 29 89.7 36 ...C..C..........T........... GTAAGAATTGATGAAGCTAATAATTCTATACAAGAG 98166 29 93.1 36 .....GC...................... CAAAGAAAAAGAAAAGAAGCAGAGTAGTAATATCGG TAT [98147] 98098 29 89.7 36 ......C................GC.... AAAAAATCCGTTATCATACACTTCATTGTCTACATT 98033 29 82.8 36 ...A..C...........A.C.......T CATTTATCCAGACATAGCTTTGCTACACATAAGTTA 97968 29 93.1 37 ................AT........... AGTACTACAGAACTATCTTCCAATGGAACATTCAATC 97902 29 93.1 35 ......C.........T............ AATATAGAAATTATTTCTAACCATAAAGCCATAAA 97838 29 89.7 0 ..................A.....C..G. | ========== ====== ====== ====== ============================= ======================================= ================== 68 29 94.2 36 GTTTTATATTAACTATGAGGTATATAAAG # Left flank : TATTTTATAGAGGATGAACCATATAAGCCTCTTAAAGCGTGGTGGTAGAATATGTTTGTAATAATAACATATGATGTTGGAGAAAAGAGGGTCAATAGAGTAAGAAAAATATTAAAAAAATATTTAATTTGGACCCAAAATTCAGTTTTTGAGGGAGCAATAACAGAGGGAAAACTAAATAAATGTATGGCAGAAATAAATAAAATATCTAATAGAAATGAGGATTCAGTTTACATTTATAAAGTAAGTAATCCACATAATATAAAAAAAGATGTTTATGGTATAAATAGAAATTTAGATGACTTGTTTATATGAGTTGCAGTAAAGTGCATTTTATATAGACATTAATAAAATAAAGGAATATCAATACTTTACGGTAGTTTTTAATAAAAATAAAAAAACACTATTGCTACTTTACTGCAAAAAGGTATAATTTAGGTATCTAGGTTAGCCTTGTAGAATAAGTAATATCAGTGCTTTTACTGTTTTTTAAAAATGGG # Right flank : AGTGTTAGCAGTTGTTGTATTTTATAAACAACTGTACCAAATAATAATTAATAAATCTCCCAATAGTATTTCCTAAATATTTTATACAAACAATGTTTAGGAACATTCGCAATTTTGGAAATTTATTGGCAAAGGTGAGAAATTTGGAATTAATTTATCTTTGAAGCTACGGAGTAACTTTCTATAAAAAACTAGCATTTATAGTATCTCCACAGTATTAGTTAAATTTATTAGTGTTGTTCCAAACTATACTGCACCTCAGGGGAACCCTAAAGGGCTTCACTACTGTTCCCCAGAGGTGAAAAATTATCAATCGTAAAAAATTAAGAGTTAATAATTAAGAAGGAGTTAATAGAAGAAAAATAGAAATTACTTATAAAATAGAAAACTAGGAGGAAAATATGCCGAAATTAAATATTGAAGACTATAATATTCATTACGAAAGCTACGGAAGTGGGGAACCAATTATATTTTTATCTGGAATACTGATGAGTACAATA # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGTATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [51-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 90668-90438 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXCA01000005.1 Clostridium argentinense strain 113/29 contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 90667 32 100.0 35 ................................ TATATTTTATTTAGACCATTTTGCACATCTGTAGG 90600 32 100.0 33 ................................ AAGTTTATTTTTCCTAGCTGCCATGCTAGGCCA 90535 32 100.0 33 ................................ GGTACAGCTTTGTATTGTTCTTTCAATTTGTCT 90470 32 78.1 0 AT........T.......A.....CAC..... | C [90440] ========== ====== ====== ====== ================================ =================================== ================== 4 32 94.5 34 TGATTGAACCATAACATAGGATGTATTTAAAT # Left flank : TCAGTTATAAAAATAGGTACAAAGGTAAAAAACATACGTTTAGTTGATGGAGATCACGATATTGACTGTAAAATTGATGGCTTTGGAGCTATGAAATTAAAATCTGAATTTGTTAAAAAGATATAAATTGAATTTTACATAAGTTGTGGTATAGACACTGTAAAAAATGAAAAAAGAGTAGATATATTTATTTTTATATAAATATATCTACTCTTTTTTATTGGGTTTTGTTTTAAGGTTACATTAATAAATTTACATTATGGAGGATATCATGGCATGGTCAACATTAACAACAATTCAGAATATGTCCTAAACTATATAAAATTTTCCCAACTACATTCAAAATAAAACTTCTCCTAATCAATCGAAAAATCAACGTTTAGGAGGAGTTTTTTATTAAATTTATCAAAAATTCAAAACGGTTGGTAAAATTTTTAATAAACCCTTCATTTTCAATGGATTAATGGGTATAATGAAAATAGAGAATGGCTTAATTGCAG # Right flank : AGCTATAATAAATTTCAATATTGTATATTTAAAAAACTACATAATTATAAAAGGATTTCAACCTATCTAAGTAAAAAATTATTTAGATAGGTTATTTTTTTATTTAAAATATTTTTATGATATTTAATGAACTGTGGAGAAAAATGGAGTAATAGAGGGATAAGGTTAGATAAAGAATGAATTGTTTATTCATTCTTAGTGGAAGACACTTTATCATAGGAAAACCTATGTAGAAGTGGCTGTAAGGATTTGTAAAGAATATATAGGTGGGCTAGAATTAAAGTATGTATATACATTATTTTAATAACTAGTATAGAAAAAGGAGTTGATTTTATGAATAGGGCTATTTTAAGTGTTGATTGGGACTATTTTGTAAAAATTATACCTCAGTGGTGTGGCTCCTATATTGAAAACCAAAGAGGACTTCTTTCCGCTTGGTATAGAAGATATATAGAAGAAGGTATAAAAGGAGTTAATTTAGAGGAAGAAATAAAAGTAAG # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGATTGAACCATAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //