Array 1 194568-195144 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEJX01000029.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039536 scaffold_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 194568 29 100.0 32 ............................. ATTATGGACGACAGCTATATGAAAACGCATTG 194629 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 194690 29 100.0 32 ............................. GCGAGATTAAAGCGGGCTAACTATTTGTGAGA 194751 29 100.0 32 ............................. TGCGCAGATTCCGAACCGCTTACGATGAAGTG 194812 29 100.0 32 ............................. TTTGCCTGGGCTGGTTCGCCGAAAACGGCGCG 194873 29 100.0 32 ............................. GCTGCTCTCTCACGGGGGTGGCCTTTTTTATT 194934 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 194995 29 100.0 32 ............................. CCGGTGCTAAGTGGGTGCGTCTGCGTGATTTT 195056 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 195117 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGTGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTATTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 211281-213081 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEJX01000029.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039536 scaffold_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 211281 29 100.0 32 ............................. GGACTGACGGATAAATCATATATTGAAACGGG 211342 29 100.0 32 ............................. TGCTCGGGGCATGTTTCTAAACGCCCCTCGGG 211403 29 100.0 32 ............................. GTGGTGTCCGGTCTGTCGTTCACCCCCGCAGT 211464 29 100.0 32 ............................. AGCTGGAAGCCGCAGAGAAGCGCATAGCAGAA 211525 29 100.0 32 ............................. GCATCCGCTAGCCTCACGTAAGTTAAAGTTAA 211586 29 100.0 32 ............................. GCGCGTAACGCCACGCTATCAGTCTGGAACAT 211647 29 100.0 33 ............................. GGATCGGCATGGTTATTCATTTTCACGGCTTGC 211709 29 100.0 32 ............................. CCCGATATACAGAATTATCGGGCATCCATGAG 211770 29 100.0 32 ............................. GCGCTGAAGAATTACTGGTTGGCGATACGGTG 211831 29 100.0 32 ............................. CGTTAACTAAAACGTACAAAACAGGGAAATAA 211892 29 100.0 32 ............................. GTGGCTTGACGTGACACAGGGGCTGCCGTGGT 211953 29 100.0 32 ............................. AGTTTCCCAATCTTTCGCCACGCTGGGAAATC 212014 29 100.0 32 ............................. GAATTTTTACGGGTGATATTTTTTCTCATTGT 212075 29 100.0 32 ............................. GCGTCAACGCGGTGAACCGGCGCGCCGAGGAA 212136 29 100.0 32 ............................. GTGTTTTCTGCCGTCCACCGCGTGGATGGACA 212197 29 100.0 32 ............................. TGACGCTCGGTGATTCAGGGGCAACCATTGCG 212258 29 100.0 32 ............................. GCCAGGCCGGGATCGGTGGGGTTATCGACGAG 212319 29 96.6 32 ............................C ACGGCATCATCAACCGAGACAAGCCCCAACTC 212380 29 100.0 32 ............................. ACCGAGAACGTTCTACCTTTGATTACCTTCCC 212441 29 100.0 32 ............................. GACGCGTTAACTGGCCTGCGTGATGCTATCGA 212502 29 100.0 32 ............................. AATTATTTATCAGTCCCATAGTTGTGTCTCTT 212563 29 100.0 32 ............................. CACTCCGCGCCGCTGGCATCCATGTTATCGAA 212624 29 100.0 32 ............................. AAAATTATCGAGGATGAATTTAAAACAGGTGC 212685 29 100.0 32 ............................. ATTTGCCCCTCATCTTTCGCCCTTAAGCCGGG 212746 29 100.0 32 ............................. GTACGGAAATTGTAAGCCCCTGGATTCACAGT 212807 29 100.0 32 ............................. CTCCAGCAGTTGGGCATCAACAGGAGAAACGG 212868 29 100.0 32 ............................. GCAGCGCCGGTGTGGCACTTGCATGAATCGTT 212929 29 100.0 32 ............................. GCCGATATGGCTAAAACGGCGCTTGAGAACAG 212990 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 213052 29 86.2 0 TAA.........T................ | A [213076] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACTTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGTTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //