Array 1 127593-126650 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHLO01000003.1 Escherichia coli strain H10 NODE_3_length_379621_cov_40.5238, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127592 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 127531 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 127470 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 127409 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 127348 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 127287 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 127226 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 127165 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 127104 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 127043 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 126982 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 126922 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 126861 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 126800 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 126739 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 126678 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 146859-145671 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHLO01000003.1 Escherichia coli strain H10 NODE_3_length_379621_cov_40.5238, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 146858 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 146797 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 146736 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 146675 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 146614 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 146553 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 146492 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 146431 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 146370 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 146309 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 146248 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 146187 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 146126 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 146065 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 146004 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 145943 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 145882 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 145821 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 145760 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 145699 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //