Array 1 675495-675287 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFSJ010000002.1 Enterobacter cloacae subsp. cloacae strain CORE_Ent9 CORE_Ent9_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 675494 28 96.4 32 ........................T... GGAGGTAAATACGCCAGACGAGCTGGCGTAAG 675434 28 100.0 32 ............................ GGCTACGTAGTCCGGCGTCTGGTGCAACTCAA 675374 28 100.0 32 ............................ CACTCAAACCAACCGTCTGCAAAGCCGATTGC 675314 28 89.3 0 .............AT.........A... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 96.4 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCCGTTACAGGTAGCTTAGAAAGTCACAGTACGCCGTGACGTGCTCATTTGGCT # Right flank : GAATTAACCGACAGTTCCGGGAGCAGAGACATTTTTACTGCCGTTCAGGAAGATTTGTGGCCACCTGGCTGTCAACAATGCCGGGTGGCGCTGCGCTTACCCGGCCTACAATCGGCATTAATATCAAGTAATTGCATTATTTATCGTAGGGCAAAACGCAAGACGCGCGCTGGATTAACAGGCTAATCCATGCATCATATGGTTCAATTCTATTGAATGAAGTAAAAAAACAATGACTGGCAAATAGATAAAACCCCACGTCAGGGCGCGGGGTTTGCTTAGTGATTACTGAGCGGCAAACAGACCCAGATGTTCTTTAGCGTAAGCTTCAAAATCGGTGCAGCCGCCAATGTGTTTCTGATCGAGGAAGATCTGCGGTACGGTTTCAACCGGTTTACCCACGGTTTTTTCCAGATCGGCTTTGGTGATGCCTTCTGCGTGGATATCCACATAGCGGAAGTTAAAGTCATCACGTTCTTCAGTCAGTTTTTCAGCCAGCT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 266136-266885 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFSJ010000003.1 Enterobacter cloacae subsp. cloacae strain CORE_Ent9 CORE_Ent9_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 266136 28 100.0 32 ............................ CCGTACTCTCTGCCATCCCGATTACCGTGGTG 266196 28 100.0 32 ............................ TTGTTCACCTGGAAGATCTGGCGCACCACATA 266256 28 100.0 32 ............................ CTGCGTACACAACGCGATGGAATGAACTCCCG 266316 28 100.0 32 ............................ TGAATTCAGGCCGGGAAAAATTCCCGGCTTTT 266376 28 96.4 32 A........................... TGGTTGCGTTACGGGCGGCCCGTACGCCTGCG 266436 28 100.0 32 ............................ GAATACGCCACGTTTTTGATGAAATGTACTGC 266496 28 100.0 33 ............................ CTGTTAGCCCGTATCCCGTACTATCAGCGCAAA 266557 28 100.0 32 ............................ GCCCCGCGATCACGATCCTTCATAGGATCATG 266617 28 100.0 32 ............................ TGAATGTCGGGATTGGTAGGCGACCTACTGCC 266677 28 92.9 33 .......A.........T.......... GTCACAGTACGCCGTGACGTGCTCATTTGGCTT 266738 28 100.0 32 ............................ GGAGGTAAAAACGCCAGACGAGCTGGCGAAAG 266798 28 100.0 32 ............................ GGCTACGTAGTCCGGCGTCTGGTGCAACTCAA 266858 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.2 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGAGAAGAGTCGAAGTGTGTGATAGCGGCTTTAGGGGCGGCGAGGTAAATATTCACGACAGGGTTCATGGTGTATCTCCACGGGGTAACCTGCATAACGGACGTTGCCCAGCGTCAGGCGACGTCCTGCCCGGAACACAATTTGGCTGTATATATATACAGTATTTTGAGTTCGTTCAGAAAGTATAATCAGATCGCCCGGCTTCGCCAGAGAAAATAAGAAATTTTTAATATATTGATTTTTATATATTTATTTTTGAGTTGTCTGCGTAACAGGTTGAGGTGGGGAGCCCGGACTTCATCGTAAAGATCATTTGTGAAGAAATACGCAAGGGGGTATTGAAAGGTCTGTCCTGACGAACTGCGTCAAAACCCTTTTTACGGAAGGCTTTGTAAGTTGTTGATTTATTAAGAATGAACTGAATGAGTTGAAAAAAGGGTTAAAGGCATCAGAATTGATTATTTTCTTTTATGACAATAGGATAGCGATGTTTGCTTTCA # Right flank : CACTCAAACCAACCGTCTGCAAAGCCGATTGCGTGCACTGCCGTACAGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //