Array 1 41-670 **** Predicted by CRISPRDetect 2.4 *** >NZ_FBNK01000013.1 Campylobacter coli isolate H061980521b, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 41 36 100.0 30 .................................... AAATTAGTATTTTTTAACTCGACTGTGCCA 107 36 100.0 31 .................................... TATACTTAGCGGTGCTACAAAACAAGATTTT 174 36 100.0 30 .................................... GGGACAGGCGGTAATTTTGAAGACTTACAA 240 36 100.0 30 .................................... ACCTATGGCATTAAACAATTTTTCACATTA 306 36 100.0 29 .................................... TCTTTAATATCATCAACAGAACCTTTAAA 371 36 100.0 30 .................................... TCTTGCTGTATTTTTGCAAAAATCATCAAA 437 36 100.0 30 .................................... TAAAAAAGCATCAGGGCTAGCTCCATTTTC 503 36 100.0 30 .................................... GGAAAAGAGTTAAAAGAGCAATTAGAGTTG 569 36 100.0 30 .................................... ACACACACATTTTCATCAACTGCTAATGCA 635 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 100.0 30 GTTTTAGTCTCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : ATGGTAAAATAGCCATTTTGCAGATATATATTCATTTTTAG # Right flank : TAGACTTTGAACAAATAAAGAAAAATAGAGCTTTTTGTATACAAAAATGTATAAAAATATGCTATCATTTTAAAAGAGAAATTTAAAAAGAGACTAAAATAAGTGGTTTTCGGTTAGCCACGCAGGGTTACAATCCCTTTAAAACCGTTAAAATTCAAACAAACTAGCTTGTCTAATTTTATTAGACTTAGTTTGCTTGATTGGATATCAATATACTTTTAAAAGCTTCATCATATGCCATGTTTTTTGCTCGTCTTTAAGGCAATATCTTCCCTTGGTTTAAAATCAGCCTTAATTTTTTCTCCAAGCGGGGTTATAATGTATTTTTCAAAAATTTTCAATCCCTGAATTCCTAATTTTTCAGCCTTTACACTTCCTTCTTTTGCATTTACAAACAATAGCTTTTGATTGTCTGTTAAGTTTTCAAATTTATTATCATGTTTTTCAACACAAATACTTGAGTTACCGATATCAAAACTATTATAATAAGCAAATTCGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCTCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 276-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_FBNK01000014.1 Campylobacter coli isolate H061980521b, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 275 36 83.3 30 AACCG.T............................. CCTATTGCAACCCTTGTTTCACGGCTATAA 209 36 100.0 30 .................................... GCATTAATGCGAGATATTAGCAGGGTTGTT 143 36 100.0 30 .................................... TCCAACTTCTAAGCTAACTAAGTTTCTTTT 77 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.8 30 GTTTTAGTCTCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : TTATATCCTGCTCATCTTTCACTTGCTAAGTCTTAATCATAAGCTTAAAAATGATTATTTTGCTAGAGTTGCCATAAACTGCGTGGCATTATTTATTTTTATTTATGCGGGGGTTAATATTTCGATGACTATAGGTTTTGCACCGGTTGTCGGTATACCACTGCCTTTTTTTAGTTATGGTGGAAGTTCTTTTACAATTTTTATGATTTTCTTTGGAATTTTACAACATTTAATCACTTTTAGATATTTTTGGACAGATAATAAAAATAAATAAAATAACTTTAAGCAAAGATAAGATATAATTCTATCTTCACAAATCAAAGGCGGATTTATAGCTCAGTTGGTTAGAGCAACCGGCTCATAACCGGTTGGTCGCAGGTTCGAGTCCTGCTAAATCCACCACTACTTTAGTTGTAGATATCTAATCCCAAAAAATGAATTAAATTAACTTTAACTACAAATAATCTATACCGTTTACTATCACCTTAAATTGAAATAGA # Right flank : TAGCCATTTTGCAGATATATATTCATTTTTAGTTTTAGTCTC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCTCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //