Array 1 242535-241364 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYUY01000023.1 Salmonella enterica subsp. enterica serovar Copenhagen strain OLF-FSR1-STCopenhagen-52 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 242534 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 242473 29 96.6 33 .......T..................... CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 242411 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 242350 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 242289 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 242228 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 242167 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 242106 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 242045 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 241984 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 241923 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 241862 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 241801 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 241698 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241637 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241576 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241515 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241454 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241393 29 96.6 0 A............................ | A [241366] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 260282-258667 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYUY01000023.1 Salmonella enterica subsp. enterica serovar Copenhagen strain OLF-FSR1-STCopenhagen-52 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 260281 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 260220 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 260159 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 260098 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 260037 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 259976 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 259915 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 259854 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 259793 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 259732 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 259671 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 259610 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 259549 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 259488 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 259427 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 259366 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 259305 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 259244 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 259182 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 259121 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 259060 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 258999 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 258938 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 258877 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 258816 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 258755 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 258694 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //