Array 1 109151-107169 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUY01000009.1 Salmonella enterica strain BCW_3054 NODE_9_length_215273_cov_2.70838, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109150 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 109089 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 109028 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 108967 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 108906 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 108845 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 108784 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 108723 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 108662 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 108601 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 108540 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 108479 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 108418 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 108357 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 108296 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 108235 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 108174 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 108113 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 108052 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 107991 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 107930 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 107869 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 107808 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 107747 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 107686 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 107625 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 107564 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 107503 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 107442 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 107381 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 107320 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 107259 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 107198 29 96.6 0 ............T................ | A [107171] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127039-125913 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUY01000009.1 Salmonella enterica strain BCW_3054 NODE_9_length_215273_cov_2.70838, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127038 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 126977 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 126916 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 126855 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 126794 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 126733 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 126672 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 126611 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 126550 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 126489 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 126428 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 126367 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 126306 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 126245 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 126184 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 126123 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 126062 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 126001 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 125940 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //