Array 1 37610-38382 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUMB01000030.1 [Clostridium] scindens strain BL-389-WT-3D seq30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 37610 33 100.0 34 ................................. ACCGCCACCTTGGCCTGATCCCATGGATCCTGCT 37677 33 100.0 34 ................................. ATAAAACTATTCTCATCGCTTCCGCTGATCGCCT 37744 33 100.0 36 ................................. TTTATATTCCTCCAACTGCTCTCCGAATGCGTCAAG 37813 33 100.0 34 ................................. ATAAGCGTAGACAGCGCAAACACCAGAAAATCCA 37880 33 100.0 35 ................................. TCCACATCTTCCTCATATTCCCCGGCCCATTCATT 37948 33 100.0 34 ................................. GAAATGATTAAGTTGGATGACGGCACATATGTGC 38015 33 100.0 35 ................................. TTTCCTTCCATTGTCGATATGCAGGACGCCGTTTC 38083 33 100.0 35 ................................. ACCTTTCCAAGCGCGGACTCGAATACGTTGATCTG 38151 33 100.0 33 ................................. GTATCCTTGAACGCCCTTGCCGCTGATTGTATC 38217 33 100.0 33 ................................. AGTGATGTGATGTCTCCCGTCATCAGGGAATTT 38283 33 100.0 34 ................................. GTATTTCTGAATGTGGAGAGGATCACGACCCTTC 38350 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 12 33 100.0 34 GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT # Left flank : CCGCCATTCTTATGGAAGTAGGTGATAGAATGCTGGTGTTAATAACTTATGATGTGAATACAGAGACAGAGGCAGGAAAGAGACGTCTAAGAAAAGTAGCAAAGCAATGCGTTAATTATGGACAGCGGGTTCAAAATTCCGTGTTCGAGTGCAATCTGGACGCCGCAAAACTTCGCCAGGTAAAGGCTATCTTGGAAGACATAATTGATAAAGAGGTTGATAGTTTAAGATTATATAATCTAGGTAATAAGTATAAAGACAAGATTGAACATATAGGAGCAAAGAAAAGTTTTGATGTGACTGCCCCTCTTATATTCTAGAGTGGTTTAGTGCGAATGTGAAGTGCACATGAAAATGCAGGGAGATTCGCACCTGGATATTGATGATATGAGGGCTAGGGAAGTTATAATTTGTTGTGTAGGTGTTGGAAAAAGTTCTTTTGTTTGGCGTTTTGCATAAGAGATTGGCTGTATATTAGGGGTTTTATGTGCAAAATTGCT # Right flank : ATCCATTCTACTACAATATAAATTGGTTAATATACTTAACAACCAGTTAGGTTGTTAGCCATCTTATTGCTTAAGCTGTATAATGATGGGGCAATCGGTATATCGGCTTCCTTTCTTGGACTTACACGTCCGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.10,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 13624-15880 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUMB01000046.1 [Clostridium] scindens strain BL-389-WT-3D seq46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 13624 33 100.0 34 ................................. ATCGTTTGGGCCACCGGTTTCGCTGCTGCTGTTC 13691 33 100.0 35 ................................. ATTGTGGCACTGTGTGCATAGGCTTGTCAGGTTGT 13759 33 100.0 35 ................................. AGAAGTTCCATCACCCATCCAACCGCAAACGTTAT 13827 33 100.0 34 ................................. ATCGCCTCCTAGTTCCTCTGTGTAGTTTTTTGTA 13894 33 100.0 34 ................................. GCTAGGGCAGGTGTGTTTGCCGTTTTCGGTGTTG 13961 33 100.0 34 ................................. GCCCTGCACAACTGCACATACCGGGCAGACGGAC 14028 33 100.0 35 ................................. ACCGGATCCCTTTTATATTCCTCATACTCTATTTC 14096 33 100.0 35 ................................. CTCCTTGCACCACGCACACTCATAGTGATGCTCCC 14164 33 100.0 35 ................................. CTCCAATATCATATACCCCATCTCCACCACTGATC 14232 33 100.0 34 ................................. GTTTATTGCATCTATATACTCCTGCTCTGTTCCT 14299 33 100.0 36 ................................. GAAGCCAGACTATCCAACTACATCTCGCCTGGAATC 14368 33 100.0 31 ................................. AGAGGTTATTGCCGATATGGATGCAGGTCAA 14432 33 100.0 35 ................................. GCCAATTACAACAGTAACATTCAATGCTTTAAAAA 14500 33 100.0 35 ................................. CTTCCCTCCTACTGTATTAGTTTTCTCTCCAAGTC 14568 33 100.0 34 ................................. GCCTCTTTCTTGGTCTCTTCTGAGAATTTCTTTT 14635 33 100.0 33 ................................. TCCTCCGTGCTTGTATCCACTTTCGCCGGAAGG 14701 33 100.0 34 ................................. AACGGTCTTGATAATGTTCCTTATGATGGATACA 14768 33 100.0 34 ................................. TCCCGGCCGGGGTCTCCGCCTCCTTCCTGCTATT 14835 33 100.0 34 ................................. ATATACGCCTTGCTGGTACCGAGCATGTCAGCCA 14902 33 100.0 34 ................................. ATTTTGTGCCCGAAGGCCTAAAACTACAGGGAGA 14969 33 100.0 35 ................................. ATTTGTGAGTCCATTTGCGTATCTGTACGCATACC 15037 33 100.0 36 ................................. TTCTCTGATCCCGTTCCTGCTGCTCGCCCTCCAATC 15106 33 100.0 35 ................................. ATCAATCGTTTCAACGAAACAACATTATCTACATA 15174 33 100.0 35 ................................. GCCTCCGATGCATTCGCTGCCATGCGATCCCTCCC 15242 33 100.0 35 ................................. TATTCGCTGGAAAAATATGGCGAGAAGTCTCCATC 15310 33 100.0 34 ................................. CATGCTCCATCTGGCAACCCTGGCTCCTTATCAT 15377 33 100.0 34 ................................. TCGTCTACCTCCTCTATGGGTGCGGATTAAGGCG 15444 33 100.0 33 ................................. ACCCGTATTGCTTACATACAGTCCCATTGATGA 15510 33 100.0 33 ................................. ATCAACGACTCTTTCAATGGCTCCTCCCGTTGG 15576 33 100.0 34 ................................. GCAGGAAAGCACTGAGGGAAATGAGGAACTGCAA 15643 33 100.0 35 ................................. TCTTCATTGCATTCTTCCAGCCATTCCGAAAACTT 15711 33 100.0 36 ................................. AAAATGGATTAAGACGTCAAACGGCTTGCCTGTATC 15780 33 100.0 35 ................................. TCCTAACATAATCTGCTGTGCCCATAACATTGCCA 15848 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 34 33 100.0 34 GTCGTTCCCTGCAATGGGAACGTGGATTGAAAT # Left flank : TATACTGTATATTTCAGATATTGCCTCCGAATTAGAAGCGAAAAAATACTCCCCCGAAGGGGCACAGCACAGGCAGCAATCGCAGAAAAGAATGCATAATTAAATCACAAGTTATTTTGACGCAGGGGCAGTATGCCTCTGCGTCTTTTGAATATTGTTAGAAAGATTTTCTTACTATAGCCAACAAGAATTAAGGGTGGTGGAATAGTATGTCTAAAGGAGTTCGAGACGGCAGTCCTTCTTATCATTAAAACTTTATGAAAAAGCTAATTGAGAAATTAGAAATATAAAAAAAAATAAATTTCCTTGAAAATTAGATATCGATTCAGTAGTGCGAATGTGAAGCGTACATAAAAATCCCAGGATATTCGCACCAAAAAGTTGCACAAAAATAGTGTATTGTATTACAATATAGATTAGATGAGAGAATGTATCTAAAGGTAACTGTAATATAGCACAAAAATTTTGCAGTTATATATTAAAAATTGGATAAGTTTGCT # Right flank : TATAACATTCACTAAAATTGAATAGTTTACAATTCACACTGGGGACAGGACTACGAAACATATTTTAAGAAAGTTTATATAAAATTACCGAGTCCGGGTACTGAATGATACACGCATGTATACAGGCAATGAAAAAAATAACAAAAATTATTACACATATTGTTATAGAATTTGTAGATGAATAGTAAAAAAGTGAGTGGTAGGAAAATCTGCCACTCATTTTTTAAAAAAATTGAAGGTTCAACTCAGTATGTGATTGTTAATTGATATAGATAATACCTATAAATTCATATAATATATCGAAAGCATTGATTTCACAGCAATTCAATGGCATGGTATCATATACGCATGTGGAAAAGTCATACGAACATTATGAGAGGTTGTTATGAAGAGAGAACGAAAACTTGTATTATTATCGCATTGCATCTTAAACGTAAATGCTAAGGTGGAAGGAATTGCTACTTCAAAATCTGGTATTACAGAACTTGTTACGAGTCTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCTGCAATGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 154-1538 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUMB01000064.1 [Clostridium] scindens strain BL-389-WT-3D seq64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 154 33 100.0 34 ................................. ATCATGTATTATGTCAACAATTCAATTAATCATT 221 33 100.0 35 ................................. CTCAACTAAAGTGTGGGATGGCACCTATGCGAACG 289 33 100.0 35 ................................. TATCACGTATTATGTCAATAATTCAATTAATCATT 357 33 100.0 34 ................................. GTTGATGTCTCTATATCTCCTATGACTCCCCCGT 424 33 100.0 33 ................................. ATATTCCGCATTGCTGATCTTGAGCGGTTCAAA 490 33 100.0 35 ................................. ACCAGCTGTTCGATGCCCTTTCCGCTCCGGTATGC 558 33 100.0 36 ................................. GCTCTGCACCGGCTCTCCCCTAGCGGTCCGGAAGCC 627 33 100.0 33 ................................. CCTTCTGCCCGCCTCCCAGTCCTCAAGCGTTCG 693 33 100.0 34 ................................. CTTGTCCTCTTTCACGCATCTTTCAAGAAGATAC 760 33 100.0 34 ................................. TCTCATAACCTTCTACCTCCTAACATCCATAATT 827 33 97.0 35 ............................T.... ATATTTTCTAAAATATCCTTCTGCGCTTCTTCTGT 895 33 100.0 33 ................................. ATTCATTATGTTCGCTCCCTGCCTGCGTTTTCT 961 33 100.0 34 ................................. GTTTTCAAATAGTTTCTGTGCCATTTCGGCCGTT 1028 33 100.0 35 ................................. TCTGATAAATACACCACCTGGATGAATCACTTGCT 1096 33 100.0 35 ................................. TCTGATAAATACACCACCTGGATGAATCACTTGCT 1164 33 100.0 35 ................................. ATGCAAGTAGCAAGTATTAAGGAAAGGAGGTATAT 1232 33 100.0 36 ................................. ATTTCTGCATCTTCGGGGCAAGTCTCGCCCCAGTCC 1301 33 100.0 36 ................................. ATGTTTTTCCCGTTATCACGGCAACATCCGAAGTAG 1370 33 100.0 34 ................................. CAAGGAGGAAATTATTTATGGCACAGACACAGAA 1437 33 100.0 36 ................................. GACGGAGCAGGGGGATTCTCCCAGCGCCCAGACCAG 1506 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 21 33 99.9 35 GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT # Left flank : AACCATCTCATACTTACCTTTATTTTAGACCAGCGAATATCGGTGGTCTTATTTCAATGTTCAAAATCCTACATAAAACTTTTTGCCTGAAATAATCAATTTACTATTGACTTTTTATTTGCAGGCTTAAAACAAACCGTGATTCTCCCATTAG # Right flank : TAAAGAGTAGAGAGGGGCGTTTTGGTATGAAAATAGAAATAGGCAAAGAATTTCCACAGTATTTTAAGCCCTCATATCCAGAGGAATTTAAATTATTTTCACACTTTGAAACGACAGCAGGAATACCAACTGTTTTGTTTGCAATCACGACTTGGAAAGAGAATGGTAAGCCGAATGTGTGCTTTCATTCGTGGAGCTGCTTTCACGGAGATAAAACCGCTTTCTTTGCCGTGATGGGGAACTTATATCAGCATACCCACACCTATGCCAATATCCAAAGAGAAAAATGCTTTTGTATTAACTTCCTTCCGATAAGTTTCTACGACAAGCTGGTAAACACCATTCGCCAAAATGAAATGGACGATGACGAATTTGCGGCAGGAGGGTTTACAGCTTCTTATGCCAAAACAATTCACGCCCCTGTAATCAATGAGGCGTTTCTTAGTATGGAATGTACCCTGAAAGAAGTACAGGATTTAAGCGGTGCGGGAATTACAGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.10,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //