Array 1 120655-122086 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXOQ01000004.1 Salmonella enterica strain BCW_1541 NODE_4_length_350607_cov_2.95668, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 120655 29 100.0 32 ............................. CTAGGGTTTCGGGTAGTTTTGTTTGACGGGAC 120716 29 100.0 32 ............................. CTACTCAAAAGAAACCCAACTGCGAGTAATTC 120777 29 100.0 32 ............................. TGGGCTATCGGCGTCTCCTCAGAATCCACACG 120838 29 100.0 32 ............................. CAACATAACTGCCATCCAGAAAGGTAGAACGC 120899 29 100.0 32 ............................. ATATCCCTGACTGTCGTCAGGAGCCGTTTACC 120960 29 100.0 32 ............................. TCTGCCAGTCCCTTCCAGACGGTATTCTTCAC 121021 29 100.0 32 ............................. GTGTACTGCGCCATGCGACTCTCTGCGCGGTA 121082 29 100.0 32 ............................. CAGAACAAGACAGTCTGTGCAGGTTCTCAGGG 121143 29 100.0 32 ............................. ACTAAGCTTAAAGGAAGCGGGATAGGTGAAAT 121204 29 100.0 32 ............................. GCGTGACGTGTTTCCTGTAATATTGAATATCA 121265 29 100.0 32 ............................. ACTACACGCCACCTACGCCGGAAGACCTGAAC 121326 29 100.0 32 ............................. TTCGCCATATAGATATATGACTGCATGTCGGA 121387 29 100.0 32 ............................. GGTTTGCAGAAAGCGCCCCGGAGGGCGCAGAT 121448 29 100.0 32 ............................. ATCCTACGTACTGGTTACGGCAGGACCTTGAG 121509 29 100.0 32 ............................. TATCGGCGATAATCGGTATTGAGGAATACCGT 121570 29 100.0 32 ............................. GTACCAACAAAAAATATCGAGCAGTTAGGCGA 121631 29 100.0 32 ............................. GGGCTCTCCGACGAATTCATTACGAGGGCGAT 121692 29 100.0 32 ............................. TCGCCGCGGGTAGAAATTTACAGCATTGATGA 121753 29 100.0 32 ............................. GAAAGATGCCGGCTGCCTGCGGCCAGTACATC 121814 29 96.6 32 ...........A................. TTACCGATAGACAGGCTCGCACTCGCGCAGTT 121875 29 100.0 32 ............................. ATGATTTTTTCCTCAATTACCCGCTATAATAC 121936 29 96.6 32 .............T............... TTTGCGCTCGCTGACGTCAACAGCTTCTACGC 121997 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 122058 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCAGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT # Right flank : ATTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //