Array 1 604-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOQY01000096.1 Corynebacterium glutamicum strain 617 N_110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 603 29 96.6 32 ............................G CTCTCCACTGGATCTACGCTCTCAGTGGAGGG 542 29 96.6 32 ............................T GCTGCGACCACGACCGTGGGCCATGTGCAGCA 481 29 100.0 32 ............................. GACCGTGTGGTACGACTGGGTGTGGGTGCCGT 420 29 100.0 32 ............................. TCAATCATCGGCGGTTCTTGAAGCGTTGCACC 359 29 96.6 32 ............................G TAATAGCAGTTTTGGTGATTTTGACACTGAGT 298 29 100.0 32 ............................. CGCCGATTCAGTGCCCGAGTGGTGGCCTGAGT 237 29 96.6 32 ............................G TGGGGGTTGGACACCTATGCGGAGATGAGTGT 176 29 100.0 32 ............................. TACTTCAAGCCCCGCCCACCAGCGGGGCTTCA 115 29 96.6 32 ............................G TGAGAGCGCCGGTAACAATATCCCACTCAAGC 54 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTTCTCCCCGCTCAGGCGGGGATGGTCCC # Left flank : ACGAACGATGTCCTCCGCAAGAGCA # Right flank : CTCAAACCTGGACGATGTCCTCCGCA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCTCAGGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCAGGCGGGGGTGGTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.60,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [18.3-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27-909 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOQY01000084.1 Corynebacterium glutamicum strain 617 N_99, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27 29 100.0 32 ............................. TAGCGCATGCCATTGTGTCTAGCGCTGCGGCA 88 29 96.6 32 ............................C ATCTAAGACAACATCTCTGAAATATGGCCTCA 149 29 96.6 32 ............................C GCGTCACCGGCAAGGGATTGCACCTGCCCCTT 210 29 100.0 32 ............................. TACAAGTATTTGCTTGATCATCAGCGGGCTTA 271 29 100.0 32 ............................. GCGAAGAGGTGCCATCGCTAACACAGGAAAAC 332 29 100.0 32 ............................. TTGGCGACCACATGAAAACCCAATGCTGATTC 393 29 100.0 32 ............................. GTGACGTCGATTTCGATGGTCTCCACCTTCTC 454 29 96.6 32 ............................C CGGATGCCCCTGAGCGTCTCATGGGTTACCGC 515 29 96.6 32 ............................C GTGGTATTCGGCTCAGGAAGCTTTGGATGCGG 576 29 100.0 32 ............................. GCTTTCTTGGAGGCGCAGCAAAAATACAACCA 637 29 96.6 32 ............................C GTAATCGCGATCGTCGTGACCTCATTGACAGC 698 29 96.6 32 ............................T GATCCATGGGCTGCAGGCAGCTGGTCTGGGGT 759 29 100.0 32 ............................. TTCCTCATCCCGCTGACGGTTACGCACCTCTT 820 29 96.6 32 ............................A TCGATGTCAATCCAAGCGCCCGGCTCATCAGC 881 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.4 32 GTTCTCCCCGCTCAGGCGGGGATGGTCCG # Left flank : CTGGACGATGTCCTCCGCAAGAGCAAG # Right flank : ACACGGTTGCCGAAGCGTGTGTGTTTTGTCAACTTTTTATCGGCCAAAAGAGCACGGAAAAACCTACCACTTCAGCAGTAATACCCGCCAATCTGG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCTCAGGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCAGGCGGGGGTGGTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.10,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3291-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOQY01000079.1 Corynebacterium glutamicum strain 617 N_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3290 29 96.6 32 ............................G TGGGGCATGAAAAAATGCCCCCACACCGTGAT 3229 29 96.6 32 ............................G CTGAAAATGGCCGGTGCGAAGGTGCGCGATTT 3168 29 96.6 32 ............................G ATTTCACCACTAGTGCGGGTCTCTGCGGAATC 3107 29 96.6 32 ............................T GACGGTGTGGGTGATGGTGCTGTCACGCTCCA 3046 29 96.6 32 ............................G CGTTGATAGCACCCAAATTCCCAGCACCCTCA 2985 29 96.6 32 ............................G GTGATCATGGAATCAATCGCAAAACCATGAAC 2924 29 100.0 32 ............................. GAATGGGCAAAAAACGGCGGAAGTTTCGCGTC 2863 29 100.0 32 ............................. TGGCCGTCATCGTATAGGGGACTAGGCCGTGC 2802 29 96.6 32 ............................G CTTTTGATCCGCAACCAACGAATTGATCTCAG 2741 29 96.6 32 ............................G ACGCGCAGGATCAGCGATTGTCTCAGTAACAG 2680 29 96.6 33 ............................A GCTTATCGTCCCTGATTCGGTATTTGATCTGGC 2618 29 96.6 32 ............................A GCCCCTGTGCGTGCCTGGTGCGCCACCGCATA 2557 29 96.6 32 ............................T GCGTTTGCGACTGGGCTCAAGGTAGGTGATTG 2496 29 96.6 32 ............................T GAGTGATTTGATTGTGTCCCCGCACATGCTGC 2435 29 96.6 32 ............................G TCACCGTGGACGTAACCGTCACCCTGGACCAC 2374 29 100.0 32 ............................. AGATGGGTGGAAAAGGTGCACGCGCACCAAAC 2313 29 96.6 32 ............................G ATCAAAGCACTCATCAAGGACAAGCAACTCAA 2252 29 100.0 32 ............................. TATCCAGTCCTAATCAACGCGATCATTACTCG 2191 29 100.0 32 ............................. TGTCGTCATCGTTGATGAGATTTGCTGAGTTT 2130 29 96.6 32 ............................G GGCAGCGGCGTTCGCAGAGGAGTTGACTGCAG 2069 29 100.0 32 ............................. AGCTCCCCCTGCTCGGCAGGCTGTGGGTCACT 2008 29 96.6 32 ............................G GTGGAAAAGGCGAAAGCTAAGGTCACCGACGA 1947 29 96.6 32 ............................G GATTCATACACGCTGACTAGCGGTTTTGGCCC 1886 29 96.6 32 ............................G GTATTGCTTGTGGATCCAAGTGACCGGATTCC 1825 29 100.0 32 ............................. CGCCCGCCCGGATCACGCCAAAGATGGCGAAT 1764 29 100.0 32 ............................. CGCAAACAGGATCGCGTGAAGCTCACCGAGCC 1703 29 100.0 32 ............................. AGCGCATGCAGCAGAACCAGAACGCGCCTGCA 1642 29 100.0 32 ............................. ATGGTTGGGTTCCACCACCGGGAACCCGAATA 1581 29 100.0 32 ............................. CGAATACAAGGAGGGGTACGCCAAGGCGAAGA 1520 29 100.0 32 ............................. GCCATAGTGTCCTGCCAACGCCCATAAGACGA 1459 29 100.0 32 ............................. CATTGTTTGTGGTTGTTCATGTAACTCATTAT 1398 29 100.0 32 ............................. AAGGGTTCGTTGGCGGTTCAGGCTGCTCAGAA 1337 29 100.0 33 ............................. GGTTTGGCAACCGACGTTGAGGAAGCCGCTGAC 1275 29 100.0 32 ............................. CCAAGGTCATCGATCTGGATTCGGCCAGTCTG 1214 29 96.6 32 ............................G TCCGGCACCATCGTTCTTGAGGCGGGTGACAC 1153 29 96.6 32 ............................G GCAGGTGGAAACGGATTTGGTACAGGTTCCCC 1092 29 96.6 32 ............................T GCGGCTTCCTGTCGATCCTCTTGTGCCATGCC 1031 29 96.6 32 ............................T GACGGTAAAGACTTGCAAACGCTAGTGGGTAT 970 29 96.6 32 ............................G GCCAGCGGAGTGTGGTTCAATACCGACACCTT 909 29 100.0 32 ............................. CCAATTTAGGAGACACTAATGGATTTGACCAC 848 29 96.6 32 ............................G CGAAGCGGGAAAGCTCGTAATCTTTTTGCTTA 787 29 100.0 32 ............................. AAGAATATTAGACACTTTCGTCTTACCCTCCG 726 29 100.0 32 ............................. CGATTGCTGCATGGCCTCGTGGTAAGGATTCA 665 29 100.0 32 ............................. CCAATGCACTCCGTCGGTGCGCTTGCCCTGCA 604 29 100.0 32 ............................. CGCCTACCGCAGGAACCATCCAGTGGTTCCCC 543 29 100.0 32 ............................. GTCGTTGAGGGCTTCGTTGCGCTTAAAGTCGG 482 29 100.0 32 ............................. GGCGCTTTTACCGGCCACGGCGGGACTCCTCA 421 29 96.6 32 ............................T AATATCGGAACCAGTTGTGCTTGGATCTAGCT 360 29 96.6 33 ............................A ACCGACTCAAGCAATAGCTTGGAGGTTCGACTC 298 29 96.6 32 ............................T TCAGCTACAGCATCACCTGTTTTATCAATCGC 237 29 96.6 32 ............................G CTGCTCAGACAAGTAATCAGCGATCTCCCTTT 176 29 96.6 32 ............................T GTTGGTTGCACCTTTAATAGTGGGCGGCACAT 115 29 100.0 32 ............................. GCGGTGTACCGGGTGGAGCACACCTGGATGCC 54 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 54 29 98.2 32 GTTCTCCCCGCTCAGGCGGGGATGGTCCC # Left flank : AAGAATTTTGGGCCGATATTGTCCAGCTTTGGGATGGAAATGATCGACGCGTTTCCGGAGGCACGAATTATGGGGATCCTGTCCATTTTCCGGAGTCAGAAAAATGATTACCGTTATATTATCTTCACCTCCCGAAAAATTACGCGGGCATCTAACCCGCTGGCTTATCGAGGTAAGCCCTGGCGTATTTGTAGGTCGCCCTACAGCCAGAGTCCGAGACGAAATATGGGACATGATCGTATCCACTCTTACCAATGGACGAGCAGTTATGACATTTCCGACTCGCGACAATGAACAAGGTTTTGACATCCGCGTACACCGCAGTCAATGGGAGAAGACTGACTTCGAAGGTGTCACCCTAATGCGACATCCTATATCGACAGCAAAAGGTTCGATGAAAGCCGGGTGGTCGACAGCTTCACAGCATCGTGCTGCTCGTCGACGCAAAGCAAAATGATATAAAATGACGAAAGGACCGAATATTTTCCCTGGTTATTTAG # Right flank : CTCAAACCTGGACGATGTCCTCCGCA # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCTCAGGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCAGGCGGGGGTGGTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.60,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2806-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOQY01000021.1 Corynebacterium glutamicum strain 617 N_72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 2805 29 100.0 32 ............................. TACTCACCGGGTACACCATCAGTGAGGGGATG 2744 29 100.0 32 ............................. GTGTGTTGGCTGCGGAGTCGAATGTTCTTTTG 2683 29 96.6 32 ............................G GCAAAGGAAGAGCGAATCCAGATCGCAAAGCG 2622 29 100.0 32 ............................. CAGTGCCGATCAGGTAGATAAACTCAAGGTTG 2561 29 96.6 32 ............................G TGTTTCCAGCACTCCCGGGGGCCGTTCTTGTT 2500 29 96.6 32 ............................G GATGAATCCGTTCAGCTTCGCGATGGTCGTTG 2439 29 100.0 32 ............................. ATCACCAGGCCACCACAAACCAACCGAAATAT 2378 29 100.0 32 ............................. GAATCGACGCTTTTAATCGCGGAGGGGTCGAA 2317 29 96.6 32 ............................G TTCTTCTGGCGAAGCGGACGCAACCAAGGTTC 2256 29 96.6 33 ............................A GGGTGGCAGGCTGAATGCCGAGATATACAGGGT 2194 29 96.6 33 ............................A GGATCGTAATCGCGTGCAAGTCGGACGCCTGCT 2132 29 96.6 32 ............................G GCGTGGAATGCGTACCGGAAGGGTGAACAGAT 2071 29 100.0 32 ............................. TGCGCAGCAGTCTGCCCGCCCATATGAGCAAT 2010 29 100.0 32 ............................. CTCACATCTTTAAGTAGCTGCATAACCTCAGG 1949 29 96.6 32 ............................G CTCAGCCTTAATTTCTTCCACATCAAGCCCCA 1888 29 96.6 32 ............................G TAGTAGCCTCCGGAACACCAGCCAGGACAGTC 1827 29 96.6 32 ............................G TTTGTCTACCTGATCGGCACTTGTTTTTACCT 1766 29 100.0 32 ............................. GGTCGCGCCTGCTGCGATACCCAATGCGCTCA 1705 29 96.6 32 ............................G CCTCCTGATTAAGATTCGGCCAGATGTGATGT 1644 29 100.0 93 ............................. ACGAGCGTGGCGCTGCTCTGTATCGCCGATTCGACGTGTCGTCTCGGCTCCAGATGGTCCCACGAGCGTGGCGCTGCTCTACTGCCTGCTTTT 1522 29 96.6 32 ............................G TCTCCCCCATTACCGTGGCCGTCGACAAGGCG 1461 29 96.6 32 ............................G GTGGTCGTTACTACCCCGGACTTTGGGGACCG 1400 29 100.0 32 ............................. TCCGTCAGCATCGGCTGCCACTTCCTCTGAAA 1339 29 100.0 32 ............................. TGCTGGTTAAACTTCGCCCCTCCTATATGTGG 1278 29 100.0 32 ............................. TGCGCTGGTCATGGTGATCGGGGCAACTGGGC 1217 29 96.6 32 ............................G CACCACCTATTGCCTGAGCAGCACCACCAATC 1156 29 100.0 32 ............................. CACAGTCAATGAATCGGCCATCGAACCAATCA 1095 29 96.6 33 ............................A GTACCTTTCTCCGCACCTGGCCTAGCGGGTGTA 1033 29 100.0 32 ............................. TACTGGAAACCATGCTTTCGCAGCTTGGAACA 972 29 100.0 32 ............................. GGGGCCGAGCGTCGCTCGCACTGTAAGATCAT 911 29 100.0 32 ............................. TGTCGTCCCAATCTTCACCTGGGAAGTGCTGA 850 29 100.0 32 ............................. ATTATTTCAAGCCCCGCAATGACGCGGGGCTT 789 29 96.6 32 .....................G....... TATGTCACGTTTAAGCAAGCCAGCGACCGCAT 728 29 96.6 32 ............................G GATCTTAGGCAGCTGGTTCTGGGGTGCACATC 667 29 96.6 32 ............................G ACTATGGATGTGGGCACGCTCTGGGAAGAGCA 606 29 100.0 32 ............................. ACATCGAGCAGCATCGGCCCTGTGGATCTCGG 545 29 100.0 32 ............................. AAGGGCACGTGTCTGCGGGGTGGCTAGGTAAG 484 29 96.6 32 ............................G TGCTATGCGTATGCGACAGTGGTGCTTTACCG 423 29 89.7 33 ...................A...C....A GCTGTGCCCAGGTTTTACTAACGTTGGTCGCTG 361 29 100.0 33 ............................. AAGCTCGACCATCTCTGGGTTAAAACTAACCTC 299 29 96.6 32 ............................G TCCTGAAAGTTTGGATGTGAGCTTGTCGACGT 238 29 96.6 32 ............................G GCCACACCATCTAAACAGGAAAGAGTGCCAAA 177 29 96.6 32 ............................T GGTGCCCCGGCTGAGGTGGTGGCGCATGTGGC 116 29 100.0 32 ............................. ACTATGCTTGCAGCTTTGCGTAATCGCGATGT 55 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================================================================= ================== 45 29 98.1 34 GTTCTCCCCGCTCAGGCGGGGATGGTCCC # Left flank : TGATTTGGCCGGGTTCTTCTGCTTAACTGGCCTACAAACAGTTGATCACACACAGCGTGGGGTGAGCTTAC # Right flank : CTCTCAAGCCTTTAGTACTCGGCAAGC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.09, 8:1, 9:0.72, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCTCAGGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCAGGCGGGGGTGGTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.60,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //