Array 1 1-282 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LQXC01000004.1 Listeria monocytogenes strain MF4077 contig04, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
         1	    21	  72.4	    36	--------.....................	AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 	
        58	    29	 100.0	    35	.............................	TTTGTTGAATCAACGGATATAGATTTTACAATTTC  	
       122	    29	 100.0	    37	.............................	TTGGTTCCTTTGGAAAACAACAATAGCGTGTAGTATT	
       188	    29	  75.9	    36	......T.C.A.C...CA...T.......	GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC 	G [211]
       254	    29	  79.3	     0	......A..T....AGA......A.....	|                                    	
==========	======	======	======	=============================	=====================================	==================
         5	    29	  85.5	    36	GTTTTAGTTACTTATTGTGAAATGTAAAT	                                     	       

# Left flank :   |
# Right flank :  TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTAATACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT

# Questionable array : NO	 Score: 5.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.28, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTATTGTGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:81.82%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [1-12] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
//


Array 1 270253-270601 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LQXC01000003.1 Listeria monocytogenes strain MF4077 contig03, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	=============================	====================================	==================
    270253	    29	 100.0	    35	.............................	ACAGATCAAACTCCGGAAGGGTGATTGTAAATGGC 	
    270317	    29	 100.0	    36	.............................	TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC	
    270382	    29	 100.0	    35	.............................	GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 	
    270446	    29	 100.0	    34	.............................	TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA  	
    270509	    29	 100.0	    35	.............................	CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 	
    270573	    29	  96.6	     0	A............................	|                                   	
==========	======	======	======	=============================	====================================	==================
         6	    29	  99.4	    35	GTTTTAGTTACTTATTGTGAAATGTAAAT	                                    	       

# Left flank :   GCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTTATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTTGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG
# Right flank :  AAAATAGGAGGAAATAAATTATGACTATCAAAT

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTATTGTGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:79.31%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.55,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
//