Array 1 1294-3386 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBMC01000004.1 Neisseria meningitidis strain P4480 00001.P4480_scaffold12.1.noN.49234, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 1294 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 1360 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 1426 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 1492 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 1558 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 1624 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 1702 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 1768 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 1834 36 100.0 29 .................................... ATTTATATTATTTTTGATTTTGATTTTTT 1899 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 1965 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 2031 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 2097 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 2163 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 2229 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 2295 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 2361 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 2427 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 2493 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 2559 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 2625 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 2691 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 2757 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 2823 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 2889 36 100.0 30 .................................... ATAAATTTGTGTCTGCGTTATTCATTTTAG 2955 36 100.0 30 .................................... ATAAAAAATCGAAAAAATCAAAAATACTAG 3021 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 3087 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 3153 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 3219 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 3285 36 100.0 30 .................................... TGGATAGGCGTTCCGCAGCATCAGCAAGCC 3351 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 32 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //