Array 1 165562-165953 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJVN01000001.1 Dickeya zeae ZJU1202 DZcontig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 165562 28 100.0 32 ............................ CTTCTTCAGATGCATCTCTCATGTCACAGTAT 165622 28 100.0 33 ............................ CTGATCGTTACTGTCGATGGCTTTGGCGAATGC 165683 28 100.0 32 ............................ TTTTCCGTCAGCTCTCGTCTACAGCCTGAGAT 165743 28 100.0 33 ............................ TACTGAAGTCTCTGGCGCTTGCCGCTGCTGTAT 165804 28 100.0 32 ............................ GTTACCGGCATCCCCGCTACCTGATGTACTAC 165864 28 100.0 32 ............................ TGGCAAAAAGTTTTTGTCAGTGTGCATTTAAC 165924 28 78.6 0 ...........T.C.........G.TGG | GG [165945] ========== ====== ====== ====== ============================ ================================= ================== 7 28 96.9 32 GTGAACTGCCGCATAGGCAGCTTAGAAA # Left flank : CAGAAATCCCGCCCATAGCGATATCACACTGGTCGGACTGAAAATCTGGCATCAGGGTTTTCCAGCTGGTTTTCACCCACTCCACCTTCACGCCCAGGCTTTTCGCCAGCGACTGCGCCATCGCAATATCGATACCTTCGTAACCGCCATCCGCCCGCAGCGAGGTATACGGCTTATAGTCCCCGGTGGTACAGACCTTCAGCACCCCGCGTTCCTGAACCTGATCAAGATGAGAAGCCGCGCTGGCACTACCGGCCAGCCCCAATAACAACATCAATGAGAACCGTTTTTTCATGAAATTTCCCTGCACGTCACGCCTGTCTGGCAAAACGTCACTGTAGCACGCCATATTCACCAATATCGACGTTGACCCTTTTTTTTCGCCCCGTTATAACTCGTTGATTTTCAATGATGACAAAGGTGGGTTTTAAAAAAGGGTTTCACGCCCCAAAACACGACTTTCCCTTTCAACATCAAGCCATAAGCGATAAATTGCTACA # Right flank : GGGTTACTGGCGTTAAAACTACGCTAAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAGCCTGTGCCGTGTGGGACAAAAACGCCGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGCAGGGCGAGCCCCATGGATGGGGCGAGTAACCGCGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCACTTAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAGGCGACACGGTCTATCCCGCACGAAACCACCCACCGCCCCCACATACATTCGACAAACACATTCGCCAGCAACAGCCCGGCTATTTACCAACAGCCCAAAAACGCTACTCCACCGTCAACACCGCTACCGCCTTTTTACGCTGTTTGATGGCATAACCCGCCCCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGAACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 45486-43748 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJVN01000012.1 Dickeya zeae ZJU1202 DZcontig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 45485 29 100.0 32 ............................. CGCGCAGCAACACAAAGAGAGCTGGAGCAGGC 45424 29 100.0 32 ............................. GCGTTGATTGAATTACCGAAACCTGATGTCAA 45363 29 100.0 32 ............................. CTGATGGAGATAACCAACCGCGTCGGGATTGA 45302 29 100.0 32 ............................. CACATTCGTCAACCAAGGCGTTCCGAGATTTG 45241 29 100.0 32 ............................. TTCTGGCGCGTTCGCTATGCGGTCGGGTATTG 45180 29 100.0 32 ............................. CAGGCCACCGATATCCTGCGCCCAGTGTGCGA 45119 29 100.0 32 ............................. TCATGCCACCGGAGGTCCTTAAGGCCCGCAGA 45058 29 100.0 32 ............................. TTTACAATCCGCCGCGTCTGCGTTTTGCGACC 44997 29 100.0 32 ............................. CTTAACGCCGATTTGACTTTCGTTGCGTGCGA 44936 29 100.0 32 ............................. ATACGAACCGTTTTACCCGTACCAACTTCTGT 44875 29 100.0 32 ............................. GCGCGTGTACACCGGGTCGCTGGTGTCAACCA 44814 29 100.0 32 ............................. GCAAAAGAATGGGGTGAGGTTCAAACCGACGC 44753 29 100.0 32 ............................. CGACTTTAGTAACTATTGGGATCAAGGGGCAG 44692 29 100.0 32 ............................. CGTGCGGAATTGATGCGCAGGACGTGGAGCAA 44631 29 100.0 32 ............................. GCATGATGATGACGCAATTGATTCAAGAGGTT 44570 29 100.0 32 ............................. TAATAGCGCGGCGACTTGGAGAGCAGGAACAC 44509 29 100.0 32 ............................. GCGTTCCAATGCTGGGACATGGGCGCATTTAT 44448 29 100.0 32 ............................. CAGGATATTACCGAAATCAGAGCCAGTATGCG 44387 29 100.0 32 ............................. GATCGCAACCATCCGATTTGCGTAACCGAGTG 44326 29 100.0 32 ............................. TATTCCGCGTACTGGCGGTTACAGGCGGAACC 44265 29 100.0 32 ............................. CCAACGGCAGCACTTTCACAGCCACACAGATA 44204 29 100.0 32 ............................. TCATTACTTACATGGTCGATGAAATCATCGAA 44143 29 100.0 32 ............................. CCAGGACAAGCGGGGAAGAGAGTCATTCCCGT 44082 29 100.0 32 ............................. AAAATGCAGTGCTGGGAAAAGTCGCAAAGCAG 44021 29 100.0 32 ............................. AGCGATAAATCCGTTTCGTACTGCGCCAGCGT 43960 29 100.0 32 ............................. CATGGGATTTGTAAACGCACCTATTCGGGGTA 43899 29 100.0 32 ............................. CGCAATTATACTCAGGCACAGGCGGAGGAGAT 43838 29 100.0 33 ............................. TGGCCACCGCATTGGCGAACTGGCAGAAATCCC 43776 29 89.7 0 .........................GG.A | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCCGCTGGCGAGATTGAGCCACCGCAGGCACCGCCAGACGCACAACCGCCCGCCATTCCCGAACCGACACCCTTTGGTGACGCCGGGCACCGGGGGCATGGCGGATGAGCATGCTGGTGGTGGTAACGGAAAACGTGCCGCCGCGCTTGCGCGGTCGGCTGGCGGTTTGGCTACTGGAAGTGCGCGCCGGGGTTTATGTGGGCGACACCTCGCGCCGGGTACGGGAGATGATCTGGCAGCAGGTGGTGGAACTGGCCGAACAGGGCAATGTGGTGATGGCCTGGGCCACCAACACCGAGTCCGGTTTTGAGTTCCAGACCTTCGGTGAAAACCGGCGGATGCCGGTGGATCTCGATGGTTTGCGGTTAGTCTCTTTTCACCCCGTTGAAAATCAGTGAGTTAGCGCTCTTTAACAACCGGGAAAAATCGGTAGAATTTTCCTGCCTTTAAAATGCCTTATAAAACAGGTATATACTTTTAGA # Right flank : TAAATAAATCGGGCTCGCGGTGTGATTACGCGTGCCCGATGTTGGACCGTCAGACAGCGTTAAAACGACTGCCAGTCGTCTGCGCTGGCCGAGGTTTTGGCGGCGGCGGGTTTTTTGAGTGCCAGTGTTTTCGCGGCCGGTGCCGATGAAGGGGAAATCATCGGTCGGTTGCCTGCCAGATTGTAAGACCCGCCTCTTGCTTCTTCGAGATGGAAAATACTGACCACCTGTTTTAACTGTTCAGCCTGCTGTTGCAGGGATTGCGTGGCGTTGTAGCCTTCTCTGACCAGCGAAGCATTTTGCAGTGTGGTTTGTTCCATTTTATTAATCGCCTGGTTGACCTGCTCGATACCCAGTGACTGCTCCTGACTGGCGACGCTGATTTCGCCGACCAGTTCACTGACTTTGCGCACGCCATCCACAATCCCCTGAATGGAGACCCCGGCTTTTTCCACCAGCCGGTTCCCGGCGTCCACCGTTTCTACCGAATGGCCGATCAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5011-7545 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJVN01000017.1 Dickeya zeae ZJU1202 DZcontig17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5011 29 100.0 32 ............................. GCTCGATTTGCAGCGCAATCCAACGCTGAATC 5072 29 100.0 32 ............................. GTGATCTGGTCAGGGCGGCATTGCGCAAGTTA 5133 29 100.0 32 ............................. GATGGCTTACATTTTCTTACAGTCATGTTAAA 5194 29 100.0 33 ............................. CACTACTGCGATTGTTATCATGCTGATTCTCCA 5256 29 100.0 33 ............................. CGGGCTGAGGATACGCTGGACTATTTCCTTGAC 5318 29 100.0 33 ............................. CGCAATCCGATGCGTCTATCCACATTATTAGCC 5380 29 100.0 32 ............................. CCGGATTGCTCATTACGTTTGACTCTGGCAAC 5441 29 100.0 32 ............................. CGCACGACGTCTTTTAACACATTTGCGATGTG 5502 29 100.0 32 ............................. GGGATTCGAGATCCACTTTTGGGGGGTAGATG 5563 29 100.0 32 ............................. ACATTTACGCCGAAGACGGGTATAACGTCCGC 5624 29 100.0 32 ............................. GGTACGGCTCTCCACAGGAGATGGTCGACGAT 5685 29 100.0 32 ............................. CCCAAACTCATCGGTGACGCGGTTGATCAATA 5746 29 100.0 32 ............................. TGATGCTCAAACAGCTTCAGGTAGATGCGCTC 5807 29 100.0 32 ............................. CCATGTTCAAGGCTCGCGTGGAATTCATGCGG 5868 29 100.0 32 ............................. ACTGTGACGTTACGGTCAGGTCGTTTGCGCCG 5929 29 100.0 32 ............................. CGGAGTTGAGGTCACGAGGGAACCGCTTGGCT 5990 29 100.0 32 ............................. TTACTTTCCACGCTTCAGGCTTCGGACCAAAT 6051 29 100.0 33 ............................. CTGGATGAGTGAGTTATCAGATAAATTCACTAC 6113 29 100.0 32 ............................. AGCGCAGAATAAGAAACACCCCCACAGGACTA 6174 29 100.0 32 ............................. TCTGAAATGTTCTTCAACTGGCTTACGCACAC 6235 29 100.0 32 ............................. AAACAACCCGTTCCATTTGGCGTTAACGGGCA 6296 29 100.0 32 ............................. TGCTGGCGGGCATGCCCATTGGTGCCGTTGCG 6357 29 100.0 32 ............................. CAGGACAATTCATATTGTCCCGATGTCCATTC 6418 29 100.0 32 ............................. CGAGGGGTATTAGCAGGGGCCAATAAGGTAAG 6479 29 100.0 32 ............................. AGCACGACGGAGAAACTGAAGACGACGGCGCA 6540 29 100.0 32 ............................. CCATCCAAAAGGTGGCTTTTTGTTTCTGCACT 6601 29 100.0 32 ............................. TTACGTGGCATCGAAACAGGGCCACGCATCGA 6662 29 100.0 32 ............................. CAATCGATGAACTGATTAATAGTCTTAAAAAA 6723 29 100.0 32 ............................. TTACGTGGCATCGAAACAGGGCCACGCATCGA 6784 29 100.0 32 ............................. AGACCGCGGACTTATTCCCCTTTCGGGTGTTG 6845 29 100.0 33 ............................. CATTTCTTTCGCTTCGTTAATATACCAATCGTA 6907 29 100.0 32 ............................. TGGTTATATTGAGGTCATCGAAACGAGGTTGA 6968 29 100.0 32 ............................. GGGCCATTCGGCCCTTTCTTATCCCCACAAAT 7029 29 100.0 32 ............................. CGACCCGGAGAGTATCAATTGCTGGTGGCGCA 7090 29 100.0 32 ............................. GTCGTCGTGTTTCGTTCGATTGATGCACGCGG 7151 29 100.0 32 ............................. AAAAACAGTCCTATGGTGTAGGTGATCGCCTC 7212 29 100.0 32 ............................. CCGGGGTTATTACTCGCAAGCTGGATGGAAAA 7273 29 100.0 32 ............................. CCAAGTGAATCTCGAATCAATTCCTAAATTTT 7334 29 100.0 32 ............................. GCGTCTGGCAGGGGCCATACGACCCTGATAGC 7395 29 100.0 32 ............................. GCTTTTGGGCAGGGTGCCGTGGCCAAATACAA 7456 29 100.0 32 ............................. GAGACAGATACCTAATGAGCGTACCTGTGTGG 7517 29 86.2 0 ............T............G.GT | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTTAAAGCACGGCAGAAAATCGGTCAGTGTCGAAGGCTGGTGTTGTACCAGCCTTTCTTTTTGCAGTTTGCTCAGTTGCTTGATGCGGTATTCCCATTTCAGCGCCGTCGAGCGATCACCCGCCACACAGTGATACACCAGCGTCAACGGCCCTTTTCCGCGCAGTGAGCGCGCACCTTTGCCATTCTGATGCTCTGTCAGGCGTCTGTCGACATCGGTAGTAATGCCGGTATAAAGCCATCCGCTGCCAGTACGCAGCAGATAGACAAACCAGATAGTCTCACTGTTGTTCACGCCATTTCCTTTTCGTGGTTTAGCGCTTATTTTACGGTGACAAGCCGATAAAGGCTGCCTGTTTGACGGCATTCATCGGTGGACGTGGGTGAGGAAAATTGCGACCTTTATTTATCAATAAGTTAGCGCTCTTTAACAACGTGAAAAAGTTGGTGGAATTTTTCAGGCTTTAAAAATCATTAGAAAACAAGTATATACTTTTAGA # Right flank : TTAACGTAATAGCGCGGCACAATCCGTCGCGATGCGCTGGGCTTTATTGTGATAATATTCACATCTATCGTGAATTATGTGTGTGTAATTTCTTTTTTATGTGAATAAAACCACAAAATAGGTTGTCATCTCCGGGTGAAATAGCGGTATTCGCCGGAGAGATGACCGTGTGGTCGATAAGCGGGAGCCTTGTATGACTGATTTAACTGCAGCAGCGCAGCGTGCGCTGGGATTGATGGATTTAACCACCCTGAATGACGACGACACTGATGAAAAGGTGACGGCCCTGTGTCGTCAGGCCAATAGCCCGGCGGGGAAAACCGCTGCTATTTGCATCTACCCACGTTTTATACCGCTGGCGCGTAAGGTGCTGCGTGAGCAGGGGACGCCGGATGTTCGTATCGCCACCGTGACCAATTTCCCACACGGTAACGACGACATTGATATCGCGCTGGCGGAAACCAATGCGGCTATCGCCTACGGTGCCGACGAGGTGGACG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //