Array 1 75494-73388 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHOD01000007.1 Levilactobacillus lindianensis strain 220-4 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 75493 29 100.0 32 ............................. CCATTGGTAGGAGCGGAAAAGTGAGTGCTTCC 75432 29 100.0 32 ............................. CGTATTCGCAAATTCAAATGTCGAACCATAAC 75371 29 96.6 32 ............................T CTGGGAGCGAACTCGTTGCCGAAGTTTGATGG 75310 29 100.0 32 ............................. CATCGCGTTTTTCCCTTAGCATCCTGATAAGG 75249 29 96.6 32 ............................T TAGCAAGGAGAGTGCTAAATGCCAACACTAGA 75188 29 96.6 33 ............................T AACCAGGGTAATGATCAAGCATACACGTTAGCC 75126 29 100.0 32 ............................. TCTTAACTTTACCCCAGCGAGTAGTAGCAAGT 75065 29 100.0 32 ............................. AAGCCTCAGATAGCGCCGATGACTTAGCCAAA 75004 29 100.0 32 ............................. GGGAGATAAGACAATCGTTCTAATCACTTCGG 74943 29 96.6 32 ............................T CAGATAGCCAGTAATCACCTTCTCATCCAGGA 74882 29 100.0 32 ............................. AATTGGGATACTTCCCTGCAGATATGCCAGAA 74821 29 96.6 32 ............................T ATTGCGATTAGGGGTATGAATTGTGTTGTGAT 74760 29 100.0 33 ............................. ACCGTTTTTCCTTGCAATAGTTGCTGGGGCGTT 74698 29 96.6 32 ............................T CAGATACCGTTGATTTATGGATTCTACGGGTG 74637 29 96.6 32 ............................T CATGAAAGACAAACAAGCAGTCACCAGTAGCT 74576 29 96.6 32 ............................T TTGTCAGTAATTCGAGAGGCTTCTTTCATTGT 74515 29 96.6 33 ............................A TCACACCTCGCCATCAGGAATATCATCAATACA 74453 29 96.6 32 ............................T CCATGGAAACCGGTCGAAAAATTCGTGACAGA 74392 29 100.0 32 ............................. CGTACGATTAACCAAAGCGCCCACAGCCTGTC 74331 29 100.0 32 ............................. GACAGCTCAAACTTGCAATGCTGCGATTATGA 74270 29 100.0 32 ............................. ATTACAGACAAAGATGAGGACCCGGACGGTGA 74209 29 100.0 32 ............................. GACTTATACCCTTACACGGTCGCTCTAAAGGT 74148 29 96.6 32 ............................T CTTCAACAATCAAATTAATCATCATAAGATTT 74087 29 100.0 32 ............................. ATGTAGACACGATCCCCTTGTGGAATTTTTGT 74026 29 100.0 32 ............................. CCGTTCGCCGGTTGGTCTAACGAAAAAATAAA 73965 29 100.0 32 ............................. GACACGATCACCTGGGCCGTAAACAGCCAGTA 73904 29 100.0 32 ............................. TTCAAAATTAAGTAATCCGTTTCTCTGGGTTC 73843 29 100.0 32 ............................. GTCGCCCCACGCGGCACGTCGCCTAACTTCGA 73782 29 100.0 32 ............................. ATAATTCAAACTCAACTCCTCGAAATGCTGAT 73721 29 100.0 32 ............................. GAGCTCTGGTTCACTCGGCGAACATCCCAGGG 73660 29 96.6 32 ............................T CATCATGCTGTGGGATTATAGCCGTAGTTTGA 73599 29 100.0 32 ............................. CCGATAGAGCAATATGAAAGACGAAAAGAACT 73538 29 100.0 32 ............................. GGGGGCAGTGCAGTTGCTACGACGATTGCAGA 73477 29 93.1 32 ........................C...T TAGACGTGTCTGGCTTAACGATGGGTCTGTGT 73416 29 82.8 0 .....................G...ATTG | ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.1 32 GTACTCCCCACGTATGTGGGGATGATCCC # Left flank : GTTGAAGATGAAATTATGGCGATCGGTGCGGTTAAACATGTTCAGGGCCAACCAGTTGAACGTTTTTATCAATTAATTCAGATTGATAAGCCAATTCCTAAAAATGTTGTGAGCTTAACCGGACTAACTTCTGAATTATTAACTGAGAAGGGGATCGGTTTGGCCGCTGGTTTGCGGGGCCTCAAGGCGTTCATTGGTGATATGACGCTGATTGGCTATAATTTGCACTTTGATGAAACCTTCCTGACGGCTAGTTTTAAAAGAATTGGCTCACCGGATCTAGATAATCAAATGGTGGATTTGATGCCGGTGGTCAAGAAAGCTAATAAGTTCTTGGATAACTATCGTTTAGAGACGGTGTTGGATGATTATGGTGTTGAGAATAAGACACCTCATCAAGTTCTAGCCGATGCTCAGGCGACTTTGGATTTAGCAAACAAACTGAATGAAACAGGCGTTTTGAAAATTTGAGAACCGCGGTATGACTGCGTTTCTTTAGT # Right flank : AAAAGTAATAAATATAACCGGTAGGGACTCTCGTATGAGGAGGGAGCCTGCCGGTTTTTAATTCAGTGATGAATGGTCTATGTCTGACAGAATAGTGCCACTTGGTTGCCCCAAATAGTAATAAGTGAAACAGTAAAAGCGAAGGGCTAATGAGAATAAACCAACACTATAAGAACACTGTTACACCAACATTTTAGGCTGGTATAAGGAATGAAGATATATATTATCAAATCTAACCTCAAATCGTGAGATCTCTTGTCACAGTAACGCTTGATTGATTTCTCCCGAAAAACTTTTTGGAGAATTAACGTTCACAGTATTGTTAAAAACAGTTAACGGTGTTATATTAAATGTGAGCGTTAAATAAATTACATATTGCTGACTAATAACGACTAGGGAAACGTCATGACAGGGGACTTAAAAATGAAAATGGATCAAAAGCTAACAAGAAAACAACATCAAAATCGCTGGCTTCTCACAAGTGCAGTTGCTTTAACGCT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.99, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTCCCCACGTATGTGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 88477-85273 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHOD01000007.1 Levilactobacillus lindianensis strain 220-4 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88476 29 96.6 32 ............................T GCGAAGGCCAGCCCACCGTCAGAAGGCTGGAT 88415 29 96.6 32 ............................T AACACGGCTAAAATGATGAAGAATACAAAACG 88354 29 96.6 32 ............................T CACACTCGCAGCGCTGGCAGCTAATCCTTGAA 88293 29 96.6 32 ............................T GGAATCCTCATAGGCCGTACCGTTAATTGATA 88232 29 100.0 32 ............................. ATCTCGTTAATAGCAGCGTAAAAGTGTTGCGT 88171 29 100.0 32 ............................. TAGCTTTGTAATCAGCCTTACGTTGCTCGTTC 88110 29 96.6 32 ............................T TGCTTAGCTAAGTGTGGATTGTCCTGCTTAGC 88049 29 96.6 32 ............................T TAAACCATCTCCTTAACAGTAATTTGTGGATA 87988 29 96.6 32 ............................T CGTATCGCCAGGCGCGTACCCCGTAATCTTGA 87927 29 100.0 32 ............................. ATGACGTTTGAGTGAAAATCGCCTTGCATAGT 87866 29 96.6 32 ............................T TGACCATTGTCTGCGAGTTACCAAACGTACTT 87805 29 96.6 32 ............................G TCAACACTAGATGACCTCAAACTATCGCTACG 87744 29 100.0 32 ............................. AGGAATGGTCGAAAATAATATGCTGAGCGTCG 87683 29 100.0 32 ............................. TCCAGCAGCAATGGCTCTTATCTTGCTTGCTT 87622 29 100.0 32 ............................. AACTGGTGTTTACTCCCAAGCAGAGGCAATGT 87561 29 100.0 32 ............................. CGTGTCAGCACATTCAAATGTCGAACCATCAC 87500 29 100.0 32 ............................. CGTGTCAGCACATTCAAATGTCGAACCATCAC 87439 29 100.0 32 ............................. CGTGTCAGCACATTCAAATGTCGAACCATCAC 87378 29 100.0 32 ............................. CGTGTCAGCACATTCAAATGTCGAACCATCAC 87317 29 100.0 32 ............................. CGTGTCAGCACATTCAAATGTCGAACCATCAC 87256 29 100.0 32 ............................. TTGCTTAGTTTGATAAGAAATTGTCTTACCGT 87195 29 96.6 32 ............................T GACCGAAGGAAAACCGTGGTCGAGCTATTAAG 87134 29 96.6 32 ............................T ATCATCACGTAAGTCGTCTAACTCTTTTCGGT 87073 29 96.6 33 ............................A CTTAGCTTTTGTGCCAATTCATCGTCATCTTCA 87011 29 96.6 33 ............................A TTATGAGATCCAAAAAGCTACCGGGATCGGCAG 86949 29 96.6 32 ............................T CGAATAAATTCGCTAAAAATCTGTTGAGCTTC 86888 29 96.6 32 ............................T TCCCGCGTTGTCTTTGCGGTCGCATTGACGTT 86827 29 100.0 33 ............................. ATGCCACCTAATATGAAGATTATCTCGTCCCAA 86765 29 96.6 32 ............................T CGTTGCCAGCGTCATCAACCGGGACGATCCAA 86704 29 100.0 32 ............................. GTGACATATAGCGATGGGATCACCGGTGACAG 86643 29 96.6 32 ............................T AGGTATCACTGTCGCCAACCGCGACCGCCCAC 86582 29 96.6 32 ............................A ACCAGATAATTTTGCCTGCTAAGCAATTCCTG 86521 29 100.0 32 ............................. CTGATGACGTTGCTGATCGTTCGGTTTTCATC 86460 29 96.6 32 ............................A CAGTGGCATGATGACTAATTCAAAAAAATCAG 86399 29 100.0 32 ............................. ATCACCAATATCATCAAGTTCTAGTCCGTGTG 86338 29 100.0 32 ............................. GGCGAGTAAACCCACAGTAGGAGACATCTCAA 86277 29 100.0 32 ............................. GAACAGCCTCGCAATGTGAGTGCTGCACAATT 86216 29 96.6 32 ............................T CAGTCATTGAGACGGCGGACATCATAGCCGGG 86155 29 100.0 32 ............................. TACGGTGGAATTCTTTCCTGTGGCTAAATCTA 86094 29 100.0 32 ............................. GCGAAGGACGCATTGTGATTCGTTCCGCCGGC 86033 29 96.6 32 ............................T TTTGTACGCCTGATGCATACCCGCAAGTGTGA 85972 29 100.0 32 ............................. CAATCCTTTTATTCGATGATATTTACGAAGAA 85911 29 96.6 32 ............................T GAAGACAGCTCTAGGGACCAAACCGTCCGATT 85850 29 96.6 32 ............................T GACAGTGTGACTGCCGACAACATTACTTCCCT 85789 29 100.0 32 ............................. TACCGGGAACAACGTCCCCATATCCATTTCAT 85728 29 100.0 32 ............................. GCGCACAGACACGCCCTTACAGACGTTATTCA 85667 29 100.0 32 ............................. CAGCTGGCTGAGCCGTAGGTGACCACGTTTTT 85606 29 100.0 32 ............................. AACTGTCGCTAGTGCTGGACGACATCAAGCAA 85545 29 96.6 32 ............................T GAAGCTATGAAGCTGTTCGAAGACAAGGCATA 85484 29 100.0 32 ............................. TGCGGGTCGTCAATCTCGCTCTCGTGGTAGTG 85423 29 100.0 32 ............................. CGTCGCGAGCAGGCACAGGTCTTGAAGAACTT 85362 29 100.0 32 ............................. CGTCGCGAGCAGGCACAGGTCTTGAAGAACTT 85301 29 79.3 0 .......T..........A..G....TTT | ========== ====== ====== ====== ============================= ================================= ================== 53 29 98.1 32 GTACTCCCCACGTATGTGGGGATGATCCC # Left flank : TGTAGTCGTTGATGTTGGTGATGACCCGTTTCTGGTCGTCGGAAAGGTCATCGACGAAGAACTGGGCTTTTAGAATTTCATTCATGGTAGGGCTCCTAATTTAGTTTTTTTAGCGTCATTTGGGCATTAGGCGCCTGGTAAATCGCGAGAAATGGGGATGTCCGGTTTGACGGATATTGATGGCGGCTGGACCATTTACTCAGATTTACTTCCAGCGGTGATTATATCATATTTGGGGGTTGGATAGAGATGGGTGGGGAGTGTTGGCAGGGAGGCTTTAGATGTTATATCCGTATATTTACTGGAATGATAGTGGATTTATTATGAGAGGTTGATAAAGGGCTATTCTTTTGACAGGTTAGTATTTACTCAGGATTTGTATATTGGCAGCCGAAGTCAGTTGGGTTATGCTATAGAGGTGAGTGGATCACAAAGTACAAACTAACTAAAACAGGCCAGTTTGTAAATTTGAAATGCCGGTATATCAACGATTCTTTAGT # Right flank : TCAATTTTTATCCAATAGGTGGTTCTGAGACAGTATTTCCTTTAGTCTAAAGTTAGTTATAGGTATAAACAGTAGGGATTCGATCGGAAATAAGGCTTAATTTTGATGGTTTATGCCGTTAACGAGCCATTTTACATAGAAAATTATGATAAAATAAGTGAATACGGTTACAAAAAAGCAAAAATTGGGTAAAAAGTATCAAATAGATTAAGCAATGCTATTTATTATTTCATAAGTCATCTGTATTGACTTGGGGTGCACGGACCTGTATCTTCAAGGTTACGACGCTCCTGGATAGTTGATCGTGAAGCTTGGGATGACTTGTGTATCTACACATAGTAGTTTAACGATAAAGGTTAAGAGGCTGTACATATGGGAATGGAAATATCTGATCAGGCCGCAGTGTTGTGGGCTAAGAAACGTAGTGAGGACGGGTACCAGTATTGGTTGCCCTTGATTGTTCATTTGACAGATACACAAAAAACGATTAATTACTTGTT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTCCCCACGTATGTGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2946-663 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHOD01000033.1 Levilactobacillus lindianensis strain 220-4 contig33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2945 36 100.0 30 .................................... TTTTCAACGATAGTAACTGGTTCAGTATCA 2879 36 100.0 30 .................................... TTATCCAAGACGTTTGTATCTTTCAAATCG 2813 36 100.0 30 .................................... AACCTGTATAATGCTGTTTCAGCAGCACTC 2747 36 100.0 30 .................................... GCGACGATCCGGATAAGTGGTCGAAGGATG 2681 36 100.0 30 .................................... TAGACCGTGATCATTACTTGTGTGCTTACT 2615 36 100.0 30 .................................... TAATTACTCGCGATATTCGGATAACCATGA 2549 36 100.0 30 .................................... CTGTCCAATCGGGCCGCGGCCTCAATAATC 2483 36 100.0 30 .................................... AAAACATTCATGCTATGATAGTGAATAATC 2417 36 100.0 30 .................................... GGTACGTTTGATTGGAGGATATTATGACCA 2351 36 100.0 30 .................................... TAACCGATCTCGTTTGCTACAAGGCAAGTT 2285 36 100.0 30 .................................... CGTCCCATCTGCGTTTCTGGTGTTCTTTAG 2219 36 97.2 30 ........................G........... TTGCTATTCAAGACGGTGTGGATGACTTCG 2153 36 100.0 30 .................................... CATCGAGACGCCGAAGTAGGTAGCTACCTT 2087 36 100.0 30 .................................... AAACAAGAGAAGAAACAACCAAGTTTATTT 2021 36 100.0 30 .................................... CCAACGAAAACGATATGCCTCTAAAACGCG 1955 36 100.0 30 .................................... ACAGCTTCATTTTTCAATTGCAACCATTGG 1889 36 100.0 30 .................................... TTGTAGTGCTCATACAGTCTTTTATCCATA 1823 36 100.0 30 .................................... TTTCCACCCGATGATCCGATCTGGAAGTCG 1757 36 100.0 30 .................................... CCTGTTCGCGACCCAGTTCGATATAAGTCA 1691 36 100.0 30 .................................... CTAGTATCGAACCTTCAGTCTTGATTTCCA 1625 36 100.0 30 .................................... AAAACCAATAGAGTGGTAGTCCTGAACGCT 1559 36 100.0 30 .................................... ATGCATAGCTTTCAGACTATCATGGGCATT 1493 36 100.0 30 .................................... CTGAACCGGAGTATGCTGGGGTTTCGGTCA 1427 36 100.0 30 .................................... GTTGACTTGGGCCAGTAAGACCCCTGAAGC 1361 36 100.0 30 .................................... CACCAGTCACTGGCTTGACCTTTCATCTTC 1295 36 100.0 30 .................................... CCAAGTTTCTTGAACCACTTAACGACTCCG 1229 36 100.0 30 .................................... GGGCGCCTACTTGTTACATACGCAAGTGCA 1163 36 100.0 30 .................................... CCATTCATTAGATCCCTTACTTCACTGAAG 1097 36 100.0 30 .................................... TATTTAAGAATAAGAACCACACCAGCCTTT 1031 36 100.0 30 .................................... TCGCAATCGGCAATAGAATTGGTGGTGTTG 965 36 100.0 30 .................................... CTTGTACTTTGTCTAAATCATTCCGTACCA 899 36 100.0 30 .................................... ACTTGGCTTCAAATAAATATCAGTAACGTG 833 36 100.0 26 .................................... GGGGGCGTACTGCCTTTTTTCACTAA 770 36 97.2 31 ..................................G. TATAGTACCCTCCAGTAGCTGGATGTGATGA TAACGA [741] 697 35 91.7 0 ..............A.................-..T | ========== ====== ====== ====== ==================================== =============================== ================== 35 36 99.6 30 GTTTTAGATTAGTAGCAATTCAATAGAGTCAAGAAC # Left flank : ACGGTGGATTTGAATCACTTATTTCAACATAAACTGCAACTACAACTAAAAAAAGTTTTAGCTGATGAACAGGTTGTCAGTTTGTCAGATGAACTTCGTCAATTGCTAGTACGCATTTTAGAGGGAAGTTATTTGATGAATGTGCCGTTGGAATTACCGACATCACCAGACCTGACAAGACTGATTAAATTCAGTGGGATTCAGTTAGCACCAGCAGTTCAACAAGACCCCTATGGTATAATAGAGACATTAATTAGAGTACAAATAGAACTGGATAATCAGCGAATGATTGTGTTAACCAATGTCAGCCACTACCTCAGTGTCAACCAGCTGCAATCACTGGCGAGGTTAGTAGCCACAACTGAATTGCCTATTCTTCTAATTGAATTTTCATCATCACGACGAAACGAAGTGTTTCAGGAATGTGATTACCACTATATCGACAGTGACTTTGTTCTGTGGTGATAATCCTTCGATGAGAGTGTGATGTGAATATGACG # Right flank : TATCTTGTGATGTTATGTGCTTACGACAGATGCTTTAGGAAGTGAAGGTTCGGCAATTCGTGAATGATACTTGTTACTTTGACTTAACGAGTGCGTTCGAACTAGCACTAGCTACACAATAATAGTCGTGATCGTATCCCGTCAACTGACGGGATTTTTAGATCCAGTAAGTTTATCCCACATTCCAATAATTCACCTTCCTTACGAGCTGTCAAAACCGCGTAATGCCGCGAAAACGGGTACTATAGACACAGTACCAATTCTATCAATAGGGGGCATTATTATGGGAGTCATGAAAGCCGTTACGACGACCTTTACCAACGCTGCAATTATCAGTTCGATTACCTCAACGGTATTCATTATCCTGTTAGGGTTTTACCTGCGACGCAGAGGGACCTTCGGGGAAAACTTTGGGAAAGTGTTAACAAAGGTTGGATTGAAGTCAATATTTGAGACAGATTTTAAGAGACATTCAGAACCGCGTTTACCTTCCACAGCTC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAGTAGCAATTCAATAGAGTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //