Array 1 170285-172144 **** Predicted by CRISPRDetect 2.4 *** >NZ_NROI01000068.1 Cronobacter dublinensis strain cro3314A1 contig68, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 170285 29 100.0 32 ............................. GCTCCCAGCAATATAAGGACCTTGCAAACCAG 170346 29 100.0 32 ............................. CGGGGTGTTCCGGCGTTGCGCAGTTATCAGGC 170407 29 100.0 32 ............................. TCAGCGGGGATGGTTTATGACGGACTTGCGCC 170468 29 100.0 32 ............................. TGAGATAGCTACAGATCCGTTCGTTATCCTGC 170529 29 100.0 32 ............................. ATCTGGATAGAGATAAGAAACGGCAGTATTGC 170590 29 100.0 32 ............................. CGGGCCATCTTTCAGGCTCGTCCAGTCGCCGC 170651 29 100.0 32 ............................. TGGCAGTTCTGCCGTTTCCAGTGCCGGCGGGA 170712 29 100.0 32 ............................. AGTTCGGGGTTGACCTGTGAGTATCACAGCGA 170773 29 100.0 32 ............................. GCCGCCATGCTGGACGTGGTACTCCCGACAGC 170834 29 100.0 32 ............................. CTCACAAGGAGGTGAATTTTGAAAATCGAACA 170895 29 100.0 32 ............................. AGCTTTTCGGGATTATTTACACGATAGACGAC 170956 29 100.0 32 ............................. AACACAGCAAAACTGACAGCGCTTCGCGAGCA 171017 29 100.0 32 ............................. TTCATTATATTGCGCTGAACGCCGCTTTAACG 171078 29 100.0 32 ............................. GCATTGCGCGATAAGGCGCTCCAGGCATACAC 171139 29 100.0 32 ............................. CGCGATATACGTTCGCGTCAGCCATTTTAATT 171200 29 100.0 32 ............................. TTTGTCGGTAGCGCCAATGTAACGCCGTTCAG 171261 29 100.0 32 ............................. AGCTGGCCCGCGCATCTTTACAGGATCGCAAT 171322 29 100.0 32 ............................. TGACAGGGGCGTTTAGCCTGGCCGAAGCCGAG 171383 29 100.0 32 ............................. CCCCTTCTGAACCGCAGTTAGTGGGATAACGC 171444 29 100.0 32 ............................. ACCCAATTATTCGCGCTCGTTTTTCTGCTCTG 171505 29 100.0 32 ............................. ATCGTGATTTCCGGGCGCTATTACGTCAGATC 171566 29 100.0 32 ............................. CAATAGATGACATTCCCGCTCGTCTGGAAAGA 171627 29 96.6 33 ............................T GGGACTAAGAGTGATGGGGCTGATTTTGAGCGG 171689 29 100.0 32 ............................. TCGGCAAAAGTACAATTTGTGAAACGTTACTA 171750 29 100.0 32 ............................. AGATTTGGCTTGATGCAGCAAACAAAGAACTT 171811 29 100.0 32 ............................. CAGCCTCCAAACGTTCAGCTACCCGAGGATTC 171872 29 100.0 32 ............................. AACGCTGTCCGATATTTCCGGCGGCCAGTGGC 171933 29 100.0 32 ............................. CAAAGTGAGAAGTTATAGACTGCCGCACAGGC 171994 29 100.0 32 ............................. GCGCTGGCCTGGCGTCATTTTGTGGACACGGT 172055 29 100.0 32 ............................. CGCAATGCAGAGTTGGAGGGGCAACTTGAAGT 172116 29 93.1 0 ..........................A.T | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGACGTGCTGACCATCACCAGCGAGATGAAACAGCTCAATGGTAAAAGCGGGGTGCTGAGCCAGGTGATTACGCTGGGGCCCGAAGACGAGGTAGTCGCCGACGCGCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGCGAAAAACTGGAAAAGATCACAGGGTAAATTCTGCAATCACGCTGCCTGTGCGTGTCGTCATGGACTTCCACTTAGCGAAAGCGAACAATCCGGTAGATGTTACCGGCCCGAAAGCACGCTGAAAAAAGGCTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGTTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAAGTTCAAAGAAAACAACAGGTTGTTTTTAGA # Right flank : TTACTCATTCGCCGTGGCGCAAAAACTTACCTCTGCCAACCCCAGCCCGAATATCCAGCTTAACCACCCGCCAGGACAACCCCTCCCAACCTCCATATTCTTCAGCGGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGCAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTTGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCACTGTCTGCTGATTGAAACCCAAAATAACGGACTCGTGCTGGTGGATACCGGCTTCGGTTGCGACGATATGCGCCATCCTGGCCGTCGTTTGCCCCTCTTTTTCCGGGCGCTGAATAACATTCAGTACCGCGAATCATTAACGGCGCTGCATCATATTAAGGGGCTCGGTTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGCGGCATCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 198682-201945 **** Predicted by CRISPRDetect 2.4 *** >NZ_NROI01000068.1 Cronobacter dublinensis strain cro3314A1 contig68, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 198682 29 100.0 32 ............................. ATTTTTCGTGCTCTAAAACGCATCAATTTTCG 198743 29 100.0 32 ............................. GCGCAGGCGGTAGATTTGTTTCCCCGCGTCGC 198804 29 100.0 33 ............................. GATCACAAATAGTCATTTCTATTTTTAGTAGTT 198866 29 100.0 32 ............................. TGCAGCCGTAGCCGGCCGCCAGCTGCGATAGT 198927 29 100.0 32 ............................. GACACGTACGACCCGACCGGCGACATTGACAG 198988 29 100.0 32 ............................. CCACCTGATACGAGTCGGCACTACCGGCGACA 199049 29 100.0 32 ............................. CGTCAACCACCTCGGCGGCGCTCGACAAGTCC 199110 29 100.0 32 ............................. TCTGCACGTCGCCGGCGATCCGCTGGCCCCGA 199171 29 100.0 32 ............................. GTTTGTACGATTTCAAATATTCTGCTCATAGT 199232 29 100.0 32 ............................. CCAGCGTGATAACCGGCACCCCACGACCCGTA 199293 29 100.0 32 ............................. CTGCAATCAAAAAATGAGCCCACACCCGAAGC 199354 29 100.0 32 ............................. ATGGAGATGAAGGACTCGGAAAAGCAGATTGC 199415 29 100.0 32 ............................. GCCCTTGGCGAACTGAAAAGTCTCGATGAGGC 199476 29 100.0 32 ............................. GCTATCAAGTTCGAATCCATCAGGCAGCTGGC 199537 29 100.0 32 ............................. AGCCGGTCTGGCCGGAAATTCCGGCTTTTATT 199598 29 100.0 32 ............................. TCAGCAGGCTTACTTATCATTAACTTGCTCGG 199659 29 100.0 32 ............................. TATTTCACCGTGCACCAATTCGCTTTATTCGT 199720 29 100.0 32 ............................. CCCGACCTGACCGGCGTAAAGACGGTAACAAC 199781 29 96.6 32 ............................T TTTGTGAGTTACTCAACGTAAGTCGCAAATCC 199842 29 100.0 32 ............................. CGTGGATTCATGCCAAAGACTGGCAGGAAAAC 199903 29 100.0 32 ............................. TGGTGAGCGAGGCGCAGCGCGATCCGCAGCTG 199964 29 100.0 32 ............................. ATAAGATAAATAAAAGCTAATCCCCCCTAGGG 200025 29 100.0 32 ............................. CGCTGGTGGCGGTTAGCCAGGTGCGCGGGCAT 200086 29 100.0 32 ............................. GCGCGGACGAAATAACCGACGTTTTCGAGTTC 200147 29 100.0 32 ............................. GCGTGGGGCAAAGTGCGGCAGGTGAGCGGCAG 200208 29 100.0 32 ............................. CAAAGAAACGCGCGCCGCGGTACTCGTCGAGC 200269 29 100.0 32 ............................. AGCTGAGTGTAAGCCAGTGGCTAAATAAATTT 200330 29 100.0 32 ............................. GCCTCAGCCGCTATAACGGCGAACCGCTATCT 200391 29 100.0 32 ............................. CAAAGCTGAGCGGCGGGAGCAGCGGCTCGCCG 200452 29 100.0 32 ............................. CGCTTTTCAGCGCGCCGCGGGTCGTGCGTTGA 200513 29 96.6 32 ............................T TTAAACCCGGACACCGCGTGGGCCTTGAGGCC 200574 29 100.0 32 ............................. GTCGCAACCATGCATTTAAACCTCTGGTCAGA 200635 29 100.0 32 ............................. GGCGGGGCGATTGGGACATTGACGCCTGGCGG 200696 29 100.0 32 ............................. ATATCGTGGCAGATGTTCAGAAATACGACATT 200757 29 100.0 32 ............................. GCCGCGTGCTGGCTGCCGAGAAACTCGGGTTT 200818 29 100.0 32 ............................. GGGTGGGTTGCAGAGAACGTAACGCCGGTATT 200879 29 100.0 32 ............................. TGCTCCCAAAGCGATTGCAGGCATTCGTGATA 200940 29 96.6 32 ..........T.................. AGGCGCGCAACTCTTGGACGTACTCTCTCTGG 201001 29 100.0 32 ............................. GATTTCCTGATAATCACACTCAAATAGCCTGG 201062 29 100.0 32 ............................. GATTCTGGTCGACACACTCGAAGAGGCTAATC 201123 29 100.0 32 ............................. GGCGTGCTGTGGGTAGATAAGCGGCTGACGGG 201184 29 100.0 32 ............................. GCGGCGTGCGCGAGATTCCGGCACCAGTCGGC 201245 29 100.0 32 ............................. GGCAACCCACTCAAAGAAAAAACGTTTTACAA 201306 29 100.0 32 ............................. AACTTACCAACAAAATAGGCGAGCAGGGCAAC 201367 29 100.0 32 ............................. CCAGTGCAGGAATTAATTAACGGCGCGTGGCG 201428 29 100.0 32 ............................. GTGGACGGGCAGGGCCGCCCGCTCTGGCTGCC 201489 29 96.6 32 ............A................ TACGGGCTCCTCACGGGGGCTGTAGTTCACCC 201550 29 96.6 32 ............A................ CGTCAGTACGCTGTACCACCTGCATAAACCGG 201611 29 100.0 32 ............................. TCGTTCGCCAGCACCCAGATCGGTTTTTTGTC 201672 29 100.0 32 ............................. GGGAGCACGTTCGGCCAGACCGCACAAAACAA 201733 29 100.0 32 ............................. GGCTGGTACGCATGAAAACGCTCACCACGCGC 201794 29 100.0 32 ............................. CTAAAATCGTCGTCCCATAGCGGGAAGTTTTG 201855 29 100.0 31 ............................. CTCGGCATTACAGTCAAAAATCTGGAGAGCC 201915 29 82.8 0 ..A......C...C......A.......T | C,G [201920,201938] ========== ====== ====== ====== ============================= ================================= ================== 54 29 99.4 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GAGGTGCTGGCGGCGGGCGACATCGAACCGCCGCAACCCGCGGCGGATATGCTGCCGCCCGCTATTCCACTGGCGGATTCGCTCGCCGAAGCGGGCTTCAGGAGCCGTTAATGAGCATGCTGATGGTTGTTACCGAAAACGTGCCGCCGAGACTGCGCGGGCGGCTCGCTATCTGGCTGCTTGAACTGCGCGCCGGGGTTTATGTCGGCGACGTCTCGAAGCGGGTGCGTGAAATGATCTGGCATCAGATAACCGAACTCGCGGAAGAGGGCAATGTCGTGATGGCCTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTATGGCGTTAACCGACGTATTCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCATTTTTACCCCTTAAGAATCAGTAGGTTAACTGCTCTTTAAGAATGTGGAGATGTAATAAAAAGGTTGGTAGATTGTTGGATGTGAAAAATTCCCTTATAGAACAGTTGTATAGCTTTAGA # Right flank : TTTGGAATAATTCAAACGAAGGTTTAGGTTCTTCGGGAAATAGAGTTGTGATTATTTTTTATAAATATGATAACGCTTCTTAAAATAGCTAACTTGTATTTTAGTTAATGGTTTTTAAAGCTTTATTACAATGTGTTTTTCGAAAATCATATAGCATTCCCTGACCATTTTTTTAAAAGGAGATTTTATATGGCATGGGATAAATATGCGGCGATAAGACACGCGCGTGATCGTGCTTATAGCCAAAGTCATCATAAATGTGAACTCTTTGTTAAAGAGGCTATTATTGCAGGTGGAGTAGATATCTATCCCACACCCTCAGCAAAAGATATGGGTAAGGCGTTGATAAAAGCAGGGTTTTATGAAGTTTATGGCGAGCCTGTTGCTGGTGATGTGGCGGTGATCCAGGCAATACCCGGCCATCCTGATGGCCATACATGCATTTATGATGGGCAAATTTGGATAAGCGATTTTCGACAAAAATCGCTCTACCCCGGAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //