Array 1 233644-232213 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKCR01000031.1 Chromobacterium amazonense strain DSM 26508 Camzn_DSM26508.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 233643 29 100.0 32 ............................. GGCCAGCCGGCCATTTATCAGGCAGCCATTCG 233582 29 100.0 32 ............................. CCGACGGCCGGTATGCAGGGTTGAATGGTAAC 233521 29 100.0 32 ............................. GACGTCAACGAGATCCTGAACAGCACTTGGGC 233460 29 100.0 32 ............................. CCGTGGCTGCGGCGGATGTGGGAGACGTGGCC 233399 29 100.0 32 ............................. ATACAGACTGGTCTTATATCTGCGATTAACTC 233338 29 100.0 32 ............................. GTGCATCTAGGCGTGGAGCTTTTGCTGCTTAT 233277 29 100.0 32 ............................. GTGCATCTAGGCGTGGAGCTTTTGCTGCTTAT 233216 29 100.0 32 ............................. CAGCTTATCCTCATCGTAAATCCCGCGAGAAT 233155 29 100.0 32 ............................. ATATTGCAATTGACCATGAAATATTCGGACTT 233094 29 100.0 32 ............................. AATTTGAATTGGAAGTCGGGCATATCGTTGTA 233033 29 100.0 32 ............................. CAAATACGCCACACCGTTCTGATAGGCTAGCA 232972 29 100.0 32 ............................. AGCCGGGCATTTTATCGGTGCAGCTTCCTTTG 232911 29 100.0 32 ............................. CGTCAACTCTCTGCAGATCGACCTCAGCAAAC 232850 29 100.0 32 ............................. CCCTCAGAATGCTGTTGCTGTTGGACAGCTTT 232789 29 100.0 32 ............................. GCCGCCGGCCACAAGGCCAAGCTGCCTTGCGC 232728 29 100.0 32 ............................. TCTCGGCTGTCGTCAGCCACCGAGTCGCCGAG 232667 29 100.0 32 ............................. CGCCGGAGCTGCTGGTCGGCGGCACGCCGTGC 232606 29 100.0 32 ............................. TCGCCCAGGTGCTGGGCATCGATCCCATGGAA 232545 29 100.0 32 ............................. CCCTCACCCACCAGCCACTTGCGCGCGGCTTT 232484 29 100.0 32 ............................. GTTTGCAGTGTCTCAGCCATAAAGGCTCCTGA 232423 29 100.0 31 ............................. TCGCCCCAGCCTACGACGTTATGACTGCCGT 232363 29 93.1 32 TG........................... CGCTACGGCGCCACGCCGGGCGTACAGGTGGT 232302 29 100.0 32 ............................. TCGGTCCACCCTATGGGCCACCCCATTAGCCA 232241 29 79.3 0 ...........GCC..AT...G....... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.9 32 GTGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : CGGACATCGAAACCATGCTCGACGCCGGCGGTCTGGACAAGCCGGAGGCGCAGGGCGTGGTGGACGCGGCGTTTCCCGAAGACGAGGGGCTGGGCGATGCTGGTCATCGTAATTGAGAACGCGCCGCCCCGGCTGCGCGGCCGGATGGCGATCTGGCTCTTGGAAATCCGCGCCGGCGTTTACGTGGGCAACTACAACTGCAAAATCCGCGACTACCTGTGGCAGCAGGTGGAGGAGGGGCTGGAAGACGGCAACGCGGTGATGGCTTGGCAGGCCGCCACCGAGGCCGGCTTCGACTTCGTCACGCTGGGCGCCAACCGCCGCATCCCGGCCGAGTTCGACGGCGCGAAATTGGTGTCTTTTTTGCCGCCGCCCACGTCGGTGGATACGGGAGAATAAGGCGTAATCGATGTGAGTTGAAAGGGGGATTTGGCTCTTTAAAAATCGGTAGATTTTGGAGTGGTGTTTTTGTTCTTTGGAATCAGTTGCTTGTAATTGGT # Right flank : ACTTCCGGCGCACTATATTCCGCCTTGGGCTGAGGCCTAGCCTAGCGCGCGTTCCAGCCAGCGCCACAGCTCGGGCGCGGTAAAGTCTGCGATGACGGCGGCGGCGCCCGCGTCCAGCAGCGTTTGCGGCGGCAGCGCGCAGGCGATGCCGTAGCTGTGGATGCCGGCGGCGTGGGCGGCGCGCATGCCGGACGGGGAGTCCTCGAAGGCGCAGGCGCGGTCGGCGCAGCCGCCCAGCCTGGTCAGGCCGGTCTGGTAGGGCAGGGGGTGCGGCTTGCCGTGCGCCAGCTCGTCGCCTATCACCAGCGCGTCCACCCGGTCCGTCAGGCCCAGCCCGGCCAGCATCAGTTCGGCGTTGGCGCGTGGCGCATTGGTGACCACGGCGATGCCCACGCCATGGCGCTCTGCCCAGTCGAACAGTTCCGGCGCGCCCGGCGTCGGCGTCAGCCGGGTGACGGAGTCGCGGAACAGGCGCTCCTTGCGTTCCGCCAGCTCCAGGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 243421-242966 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKCR01000031.1 Chromobacterium amazonense strain DSM 26508 Camzn_DSM26508.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 243420 29 96.6 32 .C........................... CTGCATCCATTCGTCAAAGCGCATGCTGTCTC 243359 29 100.0 32 ............................. AAACATGCGATTTTGATTCCGCATCCTCTTTA 243298 29 100.0 31 ............................. CAGCCCGAGCATAGCCGGTGGCTAATCCGTC 243238 29 100.0 32 ............................. GCCTCGTCGATCGATTTCCTGGGTAGTCTCAA 243177 29 100.0 32 ............................. GTGTCGAGGTCATGCACGCTGGGCAGGGTGGC 243116 29 100.0 32 ............................. CCAGTCATCGACGCCGAGATGGAGCAGCAATG 243055 29 100.0 32 ............................. AAATCGTAGGCGTCAACGGCAAGCCGCTGCGC 242994 29 93.1 0 ............T..............T. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GTGTTCCCCGCGCGAGCGGGGATGAACCG # Left flank : AACCTGCTGGCGCAATGGCTGTACAACGTTCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAAAGCCGGCTGCCGCAGCTGCAATGCGCCGACCGCGCCTTCCGTCCGCTGCACCAGCAACTGGCCGCCCAGGCCATGACCGGATTCAGCTGGCTCAACCCGGAACGCACTTTGCAGCAAACCCGCTTTGCCGACGGCAGCCTGCTCACCGCCAACTTCGGCATGGCGCCCGCCGCATACGGCAAACAGACCTTGCCGCCGCAAAGCCTGCTGGCCCAGCCGGCCGGACAAGCGCCGCGCCTGTTGCGCGTGGTGGATTGCACGGGAAATTAGCGCGGCGCGATCATTCCGATGGCGTTTTCGCGTGGTAAAGTGCTCTAGATAACGGCGGCAGACGCTGTGGTCGCGATGATTCAGGCGCTGAATTTTTAGGCGGGAAAATCGGTAGGATTTTGCTTGATGTTTTTGTCTTTAAAAATCAGCTGCTTGAAATTGGT # Right flank : GGCCAGAGTTTGAGGTCGAGGTTGTCAGCCTGTGCTCCTTATGCCAGCGTGCCTGATTCTGTATGCCTCGCGCAGTATTTTCATGTGATGAATTTCTTGTGGAGACAGTTGAAAAGTGAAATGACATTCGATTGAAATGCTGCTAGCCTGCGCGCTTAGATCATGTCTATTGAGCTGACTGGTTTGTGCCGGAGGATCCATGCAAGCGTATTGGCGATACAGGGGAAAATCCTCGCCGCGTGACGATGCGGGCGAGCGCTGGCATTTGCTGCCTTTCCACATGCTCGACGTGGCGGCGGTGATGGAGGCTCTGCTGGATCTACGGCCGATTTGGGTGGCGGGTTGCGCAGCCAGCCAGGGCTGGAGCGTGGAGCAGTTCCGCGCGGCAGCGGTGTATTTCGCCATCTTGCACGATACGGGCAAGTTCGCCCGCAGTTTTCAGGCCATTCTGCCGCCGGGTTGTGTCGATTTGGTGCCGGTGGGGCGCGCGCCGCAATACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //