Array 1 68990-69559 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFQA01000093.1 Escherichia coli strain JML115 sequence093, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 68990 28 100.0 32 ............................ AGCAGCTTTCCAGCGAGCGCGGTTAACTCACT 69050 28 100.0 32 ............................ AAAACGGCGGGTTTTTTACGCGTGTGGCTGCA 69110 28 100.0 32 ............................ GTTAACCGTTTCACACTTAACACTATGAACCG 69170 28 100.0 32 ............................ CTACAGCAACTGATGCAACGGTAAGCGCGATC 69230 28 100.0 32 ............................ AGCAGCGGTGGCGAACCGCGCGTTGTTGATTT 69290 28 100.0 32 ............................ AGAACTCGAAATTTATCGCGGGACTTTTCAGC 69350 28 100.0 32 ............................ AGGCTGCTGGCGCTCTCGTTGTTAACGGCAGC 69410 28 100.0 32 ............................ GTTCCACGCGGATATCTGTAATTTCCAGCAAA 69470 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 69530 28 85.7 0 ....................A...C.CT | T,C [69550,69554] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 78617-80446 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFQA01000093.1 Escherichia coli strain JML115 sequence093, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 78617 28 100.0 32 ............................ TGAAAGTTGACGCCAGCGGCGACCCGCGTCAC 78677 28 100.0 32 ............................ AAGGCAAGTGATGGCGAAATTACCCGCGCAAT 78737 28 100.0 32 ............................ AAATTGGGGACACTTTCTTCTACCTCTTTTGT 78797 28 100.0 32 ............................ TCAATGCTGCTAAACGCGCACATGAAGAGTCA 78857 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 78917 28 100.0 32 ............................ AGTTCGGCATGAGCAGCTCCTCTGTAGTCAGA 78977 28 100.0 32 ............................ AGCCAAAATAATGCGTCGCTTTCTGACATTTT 79037 28 100.0 32 ............................ TCGAGCGTACCAGGTTTACTGTCGTCATATAC 79097 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 79157 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 79218 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 79278 28 100.0 32 ............................ GGGTTGCGCAATGGGCTGGCCGACGAACGCGG 79338 28 100.0 32 ............................ AGGTCGTAAACCCCATTTTCAAAACCAATCAG 79398 28 100.0 32 ............................ TGTGGCGCTGATGCGTCTGGGCGTCTTTGTAC 79458 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 79518 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 79578 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 79638 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 79698 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 79758 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 79818 28 100.0 32 ............................ ATCCTGGCAGAACAACCAGTCAGCAGATCCCC 79878 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 79938 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 79998 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 80058 28 100.0 33 ............................ GTTCGACGATTGAGTCCGCCGCTGTTGTTTGAT 80119 28 100.0 32 ............................ CGGCGGACCACTCATCATCGTATAAATCTTTC 80179 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 80239 28 100.0 32 ............................ GACGAATGCCGCACACCAGGGCGTCTCGTCGT 80299 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 80359 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 80419 27 92.9 0 .......................-C... | T [80439] ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //