Array 1 59906-58838 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QOCV01000002.1 Lactobacillus bombicola strain OCC3 OCC3_S86_L001_R1_001_86__paired__contig_2, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
     59905	    29	 100.0	    32	.............................	GAAATATCATCTCCAAACCGAGATCGCATTTC 	
     59844	    29	  96.6	    32	............................C	CGATGAATCATACCGTAATAGGCTGATTATGG 	
     59783	    29	  96.6	    32	............................C	ATGCTAAGTTACTGACTAAGCAAGGCTTTAAA 	
     59722	    29	 100.0	    33	.............................	GTTTACACGCAATCACAAATTGACAATAAGTTA	
     59660	    29	 100.0	    32	.............................	TGGATGGTAACTTGCCATGGCGCTGGCATACG 	
     59599	    29	 100.0	    32	.............................	CTTTTTCAACTTTCCAGCTTGCGACAGCATCT 	
     59538	    29	 100.0	    32	.............................	AGAAGTCGTTGACGGCGTAAAATACCCAACCG 	
     59477	    29	  96.6	    32	............................C	TTTTTTGACGAAATAGCAGGGGAATAAAATGT 	
     59416	    29	  96.6	    32	............................C	TATATGCCGTGTCCCTGTTTTAAATATTTTGA 	
     59355	    29	  96.6	    32	............................C	GTTCACGACACCCACTGATTGTTCATGGATTG 	
     59294	    29	  96.6	    32	............................C	TCATGACTCTAATTTTAAAGCTTTGTTAGGTC 	
     59233	    29	 100.0	    33	.............................	CGACGCCGTTCAGACGATAAATACCCAAGTTAA	
     59171	    29	  96.6	    32	............................C	TGATAGTCAGATGTGACATTATTATTTTTAAA 	
     59110	    29	  96.6	    32	............................C	ATGTTATGTGCATACAACAAGCAACAAATTGA 	
     59049	    29	 100.0	    32	.............................	GCTTCATCCGAGGGTGATTACCTTGACTAATA 	
     58988	    29	 100.0	    32	.............................	TATTGACCATACTTTATTTGGAATGCTAATAA 	
     58927	    29	 100.0	    32	.............................	AAAGGACCCTGCAATCATCGAAGGCGCCGAAA 	
     58866	    29	  89.7	     0	.............A.........A....C	|                                	
==========	======	======	======	=============================	=================================	==================
        18	    29	  97.9	    32	GTGTTCCCCACGTGTGTGGGGGTGATCCT	                                 	       

# Left flank :   GATAAAAATCAAATTATTTCTATTGGAGCAGTTAAAAAAATTAATGATAAAAAGTATGATAGTTTTTATAGATTAATTAAAGTTGATACTGCAGTGCCAAAGACGATAACTGAATTAACCGGCATAACATTAGAATTATTGAAAAAAGAGGGGGTTACTTTAGATAGAGCTCTTAGAGAACTAACTGAGTTTATTAGTTCTGCCACGATTATTGGCTATAATTTACAGTTTGATTTATCCTTTCTCATGTCCGGCTATAGATTTGTAAATTTAAAAGAACCGGATAATGAAACTTTAGATTTATTACCTGTAGTTAAAAAAGCGGAAAAATTTATTGATAATTATCGTTTGGCAACTATTTTAGATTTTTATAATATTAAGAATTCCAAGCCACATAATGCACTATCTGATGCTAAGGCTACGTTGCAGTTGTTATACAAACTAATGGAAAATGGCAATATCAAAGTTTAAAAATAAGGGTATAACAAGGATCTTTTACT
# Right flank :  GACAATGGTCAAAACGTATTGATGAACTTAGTGGTGTTCAAAGTGACTTGAATCGGGTTTTTGTTGGTAAAAATGTTGCCTAATATGCTCTACAACTTTAGATTATGTGCTAGATTTGGTGGTCTAATTCTTGGCTAATGATTTTTTGATCACTTAATTCAACTGCTAATTCAACTTTTTTATTTTTTTGTTGCAGAGTTAAGGTTTGAATTTGGTCAACGATACGCATAGCCTGCTGGTATTCGTGGACGTTTTTTAATTGATTGGTTAAGCCTGGTTCGCGTTCAATGCCGTATTTATGCGCTAGTTCAGTTAGGGCAAGAGAGGGCGTGACTTAACGGTTACTGCCCGCTGTGCACCTCTTAAATGCGCCACAGGGGGCGAAACAGAAAAAGCTAGCACCATTTCTGCTTAATTCAATTTTGGCAAAATTGTATAAGGGTCAAAATTTCATGATAAAAAATAAGCAGGAGGGACTAATGCTTATTTTTATCGTCCGG

# Questionable array : NO	 Score: 5.97
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCACGTGTGTGGGGGTGATCCT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,2] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-10.80,-11.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [2-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.55   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//