Array 1 124192-128142 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR698996.1 Arabia massiliensis isolate MGYG-HGUT-02413 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================ ================== 124192 32 100.0 33 ................................ ACGTTCGAGGACGGCGACCGCTCGATCATGCGT 124257 32 100.0 35 ................................ GTCTGTCGTCTCGATGAAGGCCCCTGACGAGGTGC 124324 32 100.0 34 ................................ TCATCCATCGAGAAGAGGAGGACGCATGGAGAAC 124390 32 100.0 34 ................................ TCATCGAGCATGTCGCCGGAGGCGTGCCGGTGGG 124456 32 100.0 33 ................................ GCGGCCCATGGGTCCGGGCTCTACAAGATCACC 124521 32 100.0 35 ................................ CGAAGCTTGGGAGCTCCTCCCACTTTCCCGCGACG 124588 32 100.0 33 ................................ GATATAGGCCGCGAACGCATCGGCGAACAGCTC 124653 32 96.9 33 ................C............... GTCATCCGGCACCGCCGCCGCGCTTGCGGCGAG 124718 32 100.0 33 ................................ GGCGCTATCGTCGCCATCGGCATCATCCTCAAG 124783 32 100.0 36 ................................ TGCGTGCATGTCGTCTATCTGCTCTCCCTGCGCTCG 124851 32 100.0 35 ................................ TCGCTGACGGCCGAGGCGTCGATCCGCCGATGGCT 124918 32 100.0 33 ................................ CGTACACGTAGCCGCCGCTGTTTGCGGAGGTGT 124983 32 100.0 34 ................................ GAGATAGGAAACAGACACATCGTTTATGTGGTAC 125049 32 96.9 35 ........T....................... AAGCAACGATGCGTCAAAGTCGAGCGGCACGCCAA 125116 32 100.0 35 ................................ ACCGAGCAGGACTGGCGGTCGCTGATGTGCGTCGG 125183 32 100.0 33 ................................ AACTCCATGCTGCTCCTGACGGCCGTCATGCAG 125248 32 100.0 36 ................................ AACCCCGCCAACGACGACGTGAAGTACGAGCCGAAG 125316 32 100.0 33 ................................ TCGGCAAGGTCGTCTATCGCGTCGAAGCCGCCG 125381 32 100.0 35 ................................ GAAAGATAAAGCGAAAGATGAAGAGCTAGATACAA 125448 32 100.0 35 ................................ TATCCGGGCCTCGGATAATTACGTTCTCACTTATG 125515 32 100.0 34 ................................ TGCATGACCTCGGTGGGAAGCGCCCCGCGCCCTA 125581 32 100.0 35 ................................ GTTGACGGTATGGCCGAGGCCGGCGCGGACGTGCT 125648 32 100.0 34 ................................ AGGGCCAAGTGATCGCATGGAGTACGTCATTGCT 125714 32 100.0 35 ................................ CACTCCACCTTGACGGCCTTGGCCTTGTTGCCGGC 125781 32 100.0 35 ................................ GGTAGCCCAGTACAGCGCAACGGCGACGGATACAG 125848 32 100.0 34 ................................ CCTTCCGTGGGGACATGGGCGACGATCCGAAAGA 125914 32 100.0 34 ................................ CCTCGACGGCGCGCCCGCCCGCGTCGGCTCCCTC 125980 32 100.0 35 ................................ CTGGCATCCCTCGGAACCGGCCTCACCGGCCTGGC 126047 32 100.0 36 ................................ AGCTGATCTAGGGATGCGTGCGTGCTGTTGCCGCAG 126115 32 100.0 34 ................................ CGCTTTGAGCGAACGACACGCTGAATATGTCAAG 126181 32 100.0 33 ................................ TCCAGCCGCATGCGGTACTCGGCCTCGATGTCG 126246 32 100.0 36 ................................ ATTGCCGGGAACGTCATCGAAAGTATCGAACTGGCC 126314 32 100.0 34 ................................ AAACACCACGAGCGCTTGCCCGGCGAGCCACGAA 126380 32 100.0 33 ................................ TTGTCGCTGGCCTTGGTCGCGATCTCGCTCGGC 126445 32 100.0 33 ................................ CCGATCCTTATACTGGCGTGCTCCAGGAGGTTG 126510 32 100.0 35 ................................ AAGGGCGACAAGGGCGAGAAGGTCAAGCAAGCTCG 126577 32 100.0 35 ................................ GTCAACACGCGCGCCGTCCCACGCTGCGTCGTTGG 126644 32 100.0 33 ................................ TATCACACGTGTCTTTACTAGTGAGACTGCGGC 126709 32 100.0 33 ................................ ATGGGCAGGACGGCGACGATGGACTTCTCGGAT 126774 32 100.0 36 ................................ GTGCCGGGAATGTAGGACGTGCGCGACCATGCCGAG 126842 32 100.0 35 ................................ TCAGATACGCCCATCAAACACCACCTTTCGTTAAA 126909 32 100.0 34 ................................ ATGATGTGCGCTCGCATCGCCATCATCTCACCGT 126975 32 100.0 33 ................................ GCCTCGGCGACCTCGATTAAGTCATCAATCACG 127040 32 100.0 35 ................................ TGAGGAACTCGGACGGCACGGTGCTCGCCGAGTAC 127107 32 100.0 34 ................................ CCACTCCCGTTGCTGCTTCGGTGTTGGCGTAAAC 127173 32 100.0 36 ................................ ATGCTTCGCACCTACTCGCCGTTATACCCAAGGCGC 127241 32 100.0 35 ................................ ACCCCCTCCAAATCGAGCGGCATCGCCGAAGTGAC 127308 32 100.0 34 ................................ ACGCGTCTCGAAGAGCAGTCCTGCTTGCATCTCA 127374 32 100.0 33 ................................ ACGCCCGGATCGGTCTACCAGACGCTCTACGCG 127439 32 100.0 34 ................................ GCAGAAGGTCGAGGAAGCGGTAGAGGACGTCAAT 127505 32 100.0 34 ................................ ACGAGTGCAAATGTAGGCGTCTCGCACTTGGTCG 127571 32 100.0 34 ................................ ATGGGGACGCCGAGGTGACGGCCTAGCCGTTTGG 127637 32 100.0 35 ................................ CTCTCGGCCCACTCGCTGGCCTCCTCGGAGCGACA 127704 32 100.0 34 ................................ TTCGACCGTCCCGCCCCGTACATGCCCAACAGCG 127770 32 100.0 33 ................................ TATCCGGGCTTCAATCCTCCTTATTCCGGAATG 127835 32 100.0 33 ................................ GCTGAGCCGGAGCCCGTTGTCCCTCGGCTTCTC 127900 32 100.0 48 ................................ GACGTGGAGGCCGAGACGACCGAGGCCGCCACGCGTCGAGCACCTCGC 127980 32 93.8 35 .............................T.T TTGGCGAACTCCATATCACCGCGCTTGACCTGGTT 128047 31 71.9 34 ..A...-T....AT........C.AC....G. GCGATATGCATTTCAGCCTTGCGCCGGTCATTAC 128112 31 75.0 0 ..T..-A........AA.....T.....G..G | ========== ====== ====== ====== ================================ ================================================ ================== 60 32 98.9 34 GTCGAGCCCCTCGCGGGCTCGCGGGTTGAAAC # Left flank : ACCCGGCGTTTCTCTGGAGGTGACGATGTACGTGCTGGTGACATACGATGTGGAGACGGCGAGTTCGCAGGGGGCTCGCCGACTGCGCCGCGTGGCGAAGATCTGCGTGCAGTACGGGCAGCGCGTGCAAAACTCAGTGTTCGAATGTTCGCTCGATCCGGCGCAGTTCGAGACGATGAAACACGAGCTAATGAAAGCAGCTGACCTAACTCGCGATAGCCTAAGGTTTTATAATCTTGGGAAGAACTGGAAGCGAAAAGTGGAGCACGTGGGAGCAAAGGAAGCGTACGACCCCGAAGGGTTTCTATGCGTGTGAACGGCGCTATGCACCTTGACAACGGAAGAGCTTTGATGCGCGAACCTCAAGTGCTGGCACGCCATTCAGGAGGTTCGCGCAGGAATTCACGGGGTAAACTAGCAGTAGGTGGCATCAGGGAATGACATATCTCTTGAAAATGAAAAATGTAGTCGGAATATACAGAAATATGCATATTCTGACA # Right flank : GAGGCTGTGCCGAAAGCTCCGAAACGCAAGTCCGCCATGGGGTCGCCAGAAACATCATGGCGGAGCCGCATCAACGATTCGGCGGAGCTCCGGCCTTTCGCGCTCGCCGGCCGCTTCTTCGCGAAAGGCTGCGGGTTGATTCGAGAAACGAGATCCTTCCCGTCGTCCGCCAAAGTCCTTTCTCGCGGACGTTGCGCTTGGAAACCTGCTACACTTACCCGGATCATCAACGGAAGGGAGGCCGCCCATGGCTGCCAAGATCATCGAATTCCCCGGTGCCGACGTGCCCGGCTCCGATCGCGACATCATGCTCTACCAGGTGAAAGCCACCATCCTCGAATCCGAGCCGCCCATCTGGCGCAGGCTTTTGGTTCCCGTCGCCGTCGACATGGACGCGCTCCACGAATTCCTCGCGCGCTCCTTCGGGTGGGCCGGCTACCACCTGTACACCTTCGAGAAAGACGGCATGTCCTACGACGCGCCGCAGCTCTGCGACGAGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGCCCCTCGCGGGCTCGCGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.70,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 2 3067050-3070802 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR698996.1 Arabia massiliensis isolate MGYG-HGUT-02413 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================================================================================== ================== 3067050 36 100.0 30 .................................... CGACGGGACGGAGGAGCAGTACGAGTCCCT 3067116 36 100.0 30 .................................... GGCCATCGACAGCGCGGTGAGCGCCACCTA 3067182 36 100.0 30 .................................... GTCGAAGCTCCGCGCTAGGGTTGCAGCCCG 3067248 36 100.0 30 .................................... CGTCTAGAAGCATCTGCGCCACGAGGTAGT 3067314 36 100.0 30 .................................... TATGCCCTGGGGAGGTGCAATGGTCACCGT 3067380 36 100.0 30 .................................... TAGTCGGTGCGGATTTCCGCCTGGTCGTCC 3067446 36 100.0 30 .................................... TCAAATCTGTTCGCCTCCATTGCATTTCCC 3067512 36 100.0 30 .................................... GTTGACCTTGTGGTCGGAGGATCGCCTTGC 3067578 36 100.0 30 .................................... TGACCAGTCTTCACGTTGACCACTTTTACA 3067644 36 100.0 29 .................................... TTGTGGGGGTATACGATGCCGCAAACGCG 3067709 36 100.0 30 .................................... GATGTCGATGCGCACGCGCTCTGACTGCTG 3067775 36 100.0 29 .................................... TCGACTTCGCGGACCGAACCGTGTCGTTC 3067840 36 100.0 30 .................................... ACTGCTACCCTTACGAATACGCCGAGGTAA 3067906 36 100.0 30 .................................... CGCCAAACTAGCGCGGGGGTGCGTTACGTC 3067972 36 100.0 30 .................................... AGGCTGGAGAGAAAGGGCGGTCAGCTGCTC 3068038 36 100.0 30 .................................... CCTCCTATCTCGTCGGGTTGGCTATCTTCT 3068104 36 97.2 30 ........................C........... AGGCTGGAGAGAAAGGGCGGTCAGCTGCTC 3068170 36 100.0 30 .................................... CCTCCTATCTCGTCGGGTTGGCTATCTTCT 3068236 36 100.0 30 .................................... TGGAGCTTCAATTTCCGAGGCACGCGATCC 3068302 36 100.0 29 .................................... TTCGATACGCTCGCCGACTACTACCGCTC 3068367 36 100.0 30 .................................... CGTAGAGGACGGCGTGGAGAAGAAGGCGCT 3068433 36 100.0 29 .................................... ATGCATCCATCAGTCACCACCCCACATGT 3068498 36 100.0 30 .................................... CTCATGCGACGGTTACGTGCCGAAGAATAA 3068564 36 100.0 30 .................................... GAAGCTTCGCAGCCTGCGCTCAATGGAGGC 3068630 36 100.0 30 .................................... TTCCGGGCGCTTCGCGCAGCGCTGGCAATC 3068696 36 100.0 30 .................................... AGCTGCTATGTGCTTACCGACGACTCAGGG 3068762 36 100.0 30 .................................... AACGATCTGCGCGTCGCCGCCGACGTTCTC 3068828 36 100.0 29 .................................... GGAGTGACCACTCGCAACACCTCGAACTA 3068893 36 100.0 30 .................................... GGGTAGCTGGTTGCCCTCTTTCGCGAGCTT 3068959 36 100.0 30 .................................... CGGTGTACTTGCTCATGACTCCTCATCCTC 3069025 36 97.2 30 ..............G..................... TGGTGAAGGAGGAAGTTATGGCGGCTATTC 3069091 36 100.0 30 .................................... GGCTGACCGGCGTAACGCCGTTGATCTACG 3069157 36 100.0 30 .................................... GCTCACGGACTTCGATTGGACGCGCCTCGA 3069223 36 100.0 29 .................................... GACTACGTGGTGTACCACGCCGTGAACCC 3069288 36 100.0 30 .................................... GGCTGCAAGGCGCGGCGTACTGCTCAAGCG 3069354 36 100.0 30 .................................... TGGCCACCGCCGCCATGCTGCAGCGCTATG 3069420 36 100.0 30 .................................... CGAAAAAGCTGCATCCATCTGCCATATCGC 3069486 36 100.0 30 .................................... GCGCGCCGCCACCGCGATCGTGCGCAAGCT 3069552 36 100.0 30 .................................... TTTCCAGAAGTGGCTCAATGCTACATATCC 3069618 36 100.0 30 .................................... GAAGGCTCGGGGTTTGAAGCTCATGAGCTA 3069684 36 97.2 30 .........................T.......... GGATACACGACCGTTTTATTGATAACATGC 3069750 36 100.0 30 .................................... CTTCACGAGGTTTGACATTCGTGAACCTTT 3069816 36 100.0 30 .................................... GTTGGGAGGAGAGCTTTGGCCCATTCATAC 3069882 36 97.2 29 .....T.............................. TGGCTCCCCAGGTACGCGCTGCGCCGCCT 3069947 36 100.0 30 .................................... CGGCGCGCATGCGTACAAGGGCCGCAAGAA 3070013 36 100.0 30 .................................... CTCATCGTGGACATGGCCGACGACTGCACG 3070079 36 100.0 30 .................................... CTCGACGGGTACGATCTCATCGACGTCGCG 3070145 36 100.0 29 .................................... ACGTGGCAGGTGACGTTTAGCACAGAATT 3070210 36 100.0 30 .................................... CGCCGTCGGCGGGGGCGTCTCGCGCGCGCT 3070276 36 100.0 30 .................................... TCGAATCTATTCCCAAGGCCCACTGGCTTT 3070342 36 100.0 29 .................................... GTGTTCCGAGCCGAGCACCAGCGAACTGA 3070407 36 100.0 74 .................................... TAAAGGCACCCTGCCTATCACCAAGGGGTGATAGGGGAGGTGCCCTATGGGTCGAATTGTACCACATTTCGGAT 3070517 36 100.0 30 .................................... TGACGCGCTGGTCATAGATCCCGCCCCCCG 3070583 36 100.0 148 .................................... CGAAAACCATCCTGATGCTGTATAATCAAGCCAACGCCGAACACCACCTGGGTCAATCGCCGGGGCAGAGTATCGGCGTTGTTTATTTCTCAAATAGGAAGGCTTCGCCGTCTTTGATGACAACGACCTTCTCGGCCTTCAGGTCATC 3070767 36 80.6 0 ..C....G.T....G.......G.........GT.. | ========== ====== ====== ====== ==================================== ==================================================================================================================================================== ================== 55 36 99.4 33 GTTTTGGAGCAGTGACAAACTGACTGGTAGTCAAAC # Left flank : GCTTATCGGCGAGGTGCTTGAGCGCGTAGAGAACATGTTTCTCTCCGAGGATGACGTGCGTCAGGAGATTGAGTCGGCGGGGCGTGCGCTGTCCGAACGGGTTGCAGCTTTGGGGCTGCGGCTTCAATCGGACTATGCTTTTGACGTACAATGGGAGATGCGGAAGTATCTGAAGGCCTTTGACTTCGGTGTTGAGATTGATCCTTCCGACACGCTCCTTGACAACTTGATAAAGTTCTTGAAGTTTGCATCCGATGCAGCGTTCAAAAAGCAGCTGGTGTTCGTGAATTTGAAGAATTTTTTGGCGGCAGATGAGATCCAGGAGTTCTATCGCCAAGCAATTTTTTCAGAATTGAACGTGCTGTTACTGGAGAGCGATCCTGATGATGTGAACTTCGAATATGAAAGAAAAATGCGCATTGACATGGACTTTCTCCAATCATAAAAATGCGCGTCAGCCGGTTTGCCCGTCCTCCCGCAGAGAGGATTTTGCCCCAACG # Right flank : CGGCGGCAGGCGCCGACGTGGCCGGGCGCGGCCTGCAATGGCCCTGCCCGCACGGCGAGCATCCCGGCACGCCCATCCTGCACATGGGCGAGTTCGCGCTGGGGCTGGGGGCGTTCTCCACGCCGGAGTACCGGCCCTCGGCCGAGCTGCCGGATGCGGAGTACCCGCTCGTGCTCACGACCGGCCGCGTGCTCGCGCAGTACAACGCCCGCGCCATGACGGGGCGCACGGAGGGGCTCGATGCGATCGAGGGGAGGTCGTTCATCGAGGTCAACGAGGCAGACGCGGACGCGCTCGGGGTGGCGGACGGCGACCGCGTGCGCGTGACGTCGCGCCGCGGCTCCATCGAGACGACCGCGCGCGTGTCGGCCAAGACCAACCCCGGGCAGACCTGGATGCCCTTCCACTTCCAAGACGGCAACAGCAACTGGCTCACCATCGCCGCCCTCGACCCCGTGTCGAAGGCCCTCGAGTACAAGGTCTGCGCCGTGCGGGTGGAG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGAGCAGTGACAAACTGACTGGTAGTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //