Array 1 1761193-1760974 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUVY010000001.1 Streptomyces albidoflavus strain LGO-A19 A19_AS2_SC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================= ================== 1761192 26 100.0 39 .......................... TTGAACGGACGAGTCCGATCCGGACCTCGGCCCAAAACC 1761127 26 100.0 38 .......................... TTGAACCGTCAGGTTCCCCCGGGCCCAAGCCCAAAAGT 1761063 26 96.2 38 .......................G.. CTGAACCGTCAGGTTCCCCCGGGCCCAAGCCCAAAGAT 1760999 26 96.2 0 ........................C. | ========== ====== ====== ====== ========================== ======================================= ================== 4 26 98.1 39 CAGCCCGGCCGGCGCTTGAGGCCATC # Left flank : CCAGGGCCGCAGGGCATCCAGCGCCGCCGGAGCGGACGGCGTACCCCCGGGCCCCCGCACCAGCCACTCGTTCCACAACGCACCCCCGGGCGCCACCACCGCCTCGAACCGCAACGCGGGCCAGAGCACCACCGGCCACCGCAACGCCTCACACTCCAGATCCCCCACGACCCGCCGCTCCACGGCCTCCGGCACCCCCAGCACCGACCGCAGCAACCCGGCTCCCCGCCGCCCCCTGGGTGACCGCACCATCGCCTGCCACCGCCGGTTCGCCTCCCGCATGGCGCCGGCATCCACCCCCAGCTCCCGCCGCGCCTCCTCCACCATCCCCGCCTGAAAATCCGCCATCCGCCGCAACAACACCAACTGAAACTCAAGCGGCCCGAACGAACTGGTCCCACCGACAGCAGCGCACATCCCCCCATTGTCCGCAGCCCCCACCCCACCGCGAAAAACAGCGGGCACGACCGCCGAGAGGCAACTGGCCGACCGCCGAAAAA # Right flank : CCACCGCACCCCCCCGCCGGGGAGGGAAGACTCACTCCCCGGCCATCCTCCGCAACATCCCCCGGAGGGACTCCCGCTCCTCCCGGGAAAACCCGGCAAGCGGCTCCCGGGCAAAATCAAGGGAGTCCCGCAGCACCCGCGCGACCTCACGCCCCTCCGCGGTCAGAGCGGCCACCTTGATCCGCCGGTCCCCGGGATCGGCCTGCCGCTCGACCAGCCCCCGCAGGGCGAGCCGGTCCACGATCCCGGTGACGTTCGACGGCTCGCACTTGAGCCGCCGGGCGATCTGCCGCATGGGCATCGCCTCGAGGGACAGCAGACCCAGTACACGCGCCTGCGCGCCGGTGAGTGCCTGCTCAGCGGCGGCCCGGTCGTACTCCTCGTGGTACCGCGCCACGACAGCGCCGATCAGCTCGACGACTTCGAGGGTCAAGGGGTCCGTGCGGGTGGCCATGGGTCCCAGGATAGCCGGTTGCTTGACAACATGAAATATTCAGACG # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 5118676-5118525 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUVY010000001.1 Streptomyces albidoflavus strain LGO-A19 A19_AS2_SC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 5118675 24 100.0 39 ........................ TCTTTGACCGGCAGGTCACATCGGACCGGCGCACAACCC 5118612 24 100.0 40 ........................ TCCGTGACCGCGAGGTCGGCACAGACCAGCACCCCTCGAT 5118548 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================== ================== 3 24 100.0 40 CAGCCCGGCCGGCGCTTGAGGCCA # Left flank : CCTTCTTCCTCGGGCAGGCCCTGCTCGGGAACCTCTCCGCCTCCATCGGCGACCCCGGCGTCCTGCGGGCCGTCATCGGCGCCGCCCTCTACATGACCCTCATGGCCGTCTTCTCCATGGGCGTCGCCGCGATGCTCCGCTCCCCCATGCTCTCCCTCGGCATCCTCGTCCCCTTCTTCTTCCTCGTCTCCTCCATCCTCGGCGCCGTCTCCGCCACCGAGAAGATCGGCCGCTTCCTCCCCGACCAGGCCGGCTCGAAGATCATGCAGGTGGTGGCGCCGCTGAACGACGACACCCCCTACGGCCCCTGGGGCGGCCTCGGCATCATGGCCCTCTGGGTGATCGCCGCCCTCGCCATCGGGTACGCCCTACTCCGCCACCGCGACGCCTAGCCAGACGGGACCAGGCCATCGGCCGGGTGGCCTCAAACGCCGGCCAGGCTTGAGTGGCCTCATTCGCCGGCCAGGCTCAGTGGCCTCAATCGCCGGCCGGGCTACCGA # Right flank : ACCCCCCAGCCCACCCCGGGAGGGAACTTCCGCTTGGCCGGAACCGAACGCCGGTGACTATCCTCCTTACGTTGACGGGGACAACCCCGGCAAGGAACTCTGTCGACGGGTGCGGGGAGCACATGATCGAGGCCACCGGCCTGACGAAGCGCTACGGCGCGAAGACCGCCGTGCACGACCTCTCCTTCCAGGTGAGGCCCGGCACGGTGACGGGCTTCCTGGGCCCGAACGGCTCGGGCAAGTCCACGACGATGCGCATGATCGTCGGCCTGGACGAGCCGACCAGCGGCCATGTCACGATCGGCGGCCTCCCCTACCGCCGCGTCCCGAACGCCCCGCGCCAGGTCGGCGCCCTGCTCGACGCCAAGGCGGTGCACGGCGGCCGCTCGGCCCGCAACCACCTGCTCTGCCTCGCGCAGCTCTCCGGCATCCCGGCCCGCCGGGTGGACGAGGTGCTGGGCGTGGTGGGGCTCCAGGACGTGGCGCGCCACCGCTCGAAG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 6950320-6949498 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUVY010000001.1 Streptomyces albidoflavus strain LGO-A19 A19_AS2_SC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 6950319 28 100.0 33 ............................ CCCCGCGCACTCCTGCGCGACCGCCGGCGCCTG 6950258 28 100.0 33 ............................ TCAGCCCCGAGCGGGGCGCGCGGGGGGTCTCCC 6950197 28 100.0 33 ............................ GTCGCGGACGCGGATGGCGGCCTCGTACGCGTC 6950136 28 100.0 33 ............................ GGTGGAGACCGCCGGCCCCCGGGGGACCTCCCC 6950075 28 100.0 33 ............................ GCCGTCGGGCCCCCAGATCTTCACGCCCTCGTC 6950014 28 100.0 33 ............................ GAGCTTGCCACGCGGCGAGGGTGGAGGCTCCTG 6949953 28 100.0 33 ............................ AGGTCAGGAGACGGGCTGGTTGGCCCTGAGCCG 6949892 28 100.0 34 ............................ GCAGGCCGGGCCCGTTTCCACCCCCTGGGCGGGC 6949830 28 100.0 33 ............................ GCGCAGGTCACCGCCACCGAGAGCCGGGCCGCC 6949769 28 100.0 33 ............................ TCCTGGACGACGGACTCCCAGGCGGAGGCCGCC 6949708 28 100.0 33 ............................ GCTGAGCCACGCGGCCCCAGCCGGAGACCTCTA 6949647 28 100.0 33 ............................ CCCGGGAGTCTTCTCCGCGCGAGCGGAGGTACC 6949586 28 100.0 33 ............................ TCTCGGCGGGGCCACCGGTCGTAGAGGAGTGGA 6949525 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 14 28 100.0 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CGCCGGCCTCTTCGTCACCCACCGCCTCGCCTCAGCCCGGATCGCCGACCGCGTAGTGGTCCTCCACCACGGCCGCGTCACCGAATCCGGAACATACGACGAGTTGCTACACCAGCCCGGCAGCCGCTTCGCCGAGCTACACCAACTCCAAAGCGGAACCGAACTGGTCCCGTGAACATTGCCCCCGCCTGGCGTCGGCCCTCCCACACCTGACCCCATTCCCGGGAGAGTACAAGCCGCCTACCAGCAGCGCCTGGAGCAACGCCCCGTACCCCCAGCAGAACCAACAGCCACCTCAGCGAGACGAGCAGGCACGCACCGTCCGGGGATTGGGAAGGGGTGACACCCTCCGATTCCGTACGGTAGGCGAGCCTCTCGCGGAGGTCGCGTACATCGCGATCTCTGAAGACGATCCCCATTCGCTCCCGACCCACGAACGAAGGGTGAAGCACATGAATGAAGATGAGGCCCCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : GGAGTGCGGCGCCTGACCGGTGTCGCCTCACCGCGGGGCAGGTCCACGATGAAGCCGAGGCCTGCGGAGAGGTCGTCGGATTTCTGCTCGTGCGAGCTCAGGGCATCGCGCAGCAGTCTGAAGTACTCCGCGGCGCCCTGCTCGTTGAGCTCGTGCCCCACGCGGGGCGGGCCGCCTGCGGTGCTCGGCGCGACCTCGTGGGCGATGAGCAGCCCCTGCTTCGTCATCTGCTTGAGGGCGTGGTAGATCGAGCCCGGCTTGGCGCTCGACCACTCGTGGGCCCCCAGCATTCAAGATCATTGCGCACCTGATAGCCGTACGCCCGTCCGTGCAGGACCGCGCCGAGAACCAGCAGCCGGATTGGTGACATGAGCATGCTCATTTTCCTGCACGCAGTTATGTCCGGATGAGTTCTATACAAGTTTGACTAGCCCAAAACTGAGGTACCTTCGTCGCGACTAATCAAGTTTGATCAAACGTCGGCGACCCTGCGGCGACAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 6955243-6953751 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUVY010000001.1 Streptomyces albidoflavus strain LGO-A19 A19_AS2_SC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6955242 28 100.0 33 ............................ TGACGCGCTCCTCGCGGACGCGGCGGCCGTGTC 6955181 28 100.0 33 ............................ GGCGACACGGACGGAGTCCTCGGTGACGCGGGT 6955120 28 100.0 33 ............................ GCCCGGCCACCGCCCCGGCCAGCGGATCGGCCA 6955059 28 100.0 33 ............................ GTTGGCGCATACCCGCAGGTGAAAGCGCAGGAT 6954998 28 100.0 33 ............................ GCCGTTGCGGAGCCAGGCGGGGATCGGCTCGGT 6954937 28 100.0 33 ............................ GGGGGTGTCGACGCCGGCTGGCGTCTCGATGCT 6954876 28 100.0 33 ............................ GCGCCATGCGGGCCTGGGACTCGGTGCCGACGA 6954815 28 100.0 33 ............................ GAGCAGGAGGCTCGCGCGGCCCGTGCGGCCCGC 6954754 28 100.0 33 ............................ TCGGGATCTACCAGACACGGACCCCCGACACTC 6954693 28 100.0 33 ............................ AGCCACACGAACAACGCCACCGCTCCGGAGGAG 6954632 28 100.0 33 ............................ CCGTGGCCGGCCAGACCGTGCCGCTCCAGAAGA 6954571 28 100.0 33 ............................ GTGCGGCCGGTACGCCCTCGCGGGCGGCGTGAC 6954510 28 100.0 33 ............................ CAGGACGGCCAGGACGGCGGCGAGCAGCTCGGG 6954449 28 96.4 33 ..A......................... CAGGGGCGCCTGACACGCGGTGTCCTCGTTGCG 6954388 28 100.0 33 ............................ ACGCGAGGTCCGCGCCCTGCTCGGCCACCCCGG 6954327 28 100.0 33 ............................ TCCGCAGACCCTCTGGCAGCACGAGCAGGGCGA 6954266 28 100.0 33 ............................ CCAGTTCCACGCGGTCCGAGGGCGCGGATACCC 6954205 28 100.0 33 ............................ GTCGCGCGGGACCCGAAGCGTCACCTTGGCGTT 6954144 28 100.0 33 ............................ GGAACCACCCGCATGAGCACCACCGAGACCGAG 6954083 28 100.0 33 ............................ GCCTGACCACGAGTCGAAGTCCCGGAGAGAGGG 6954022 28 100.0 33 ............................ GCCGGGGTTGGTCGGGGCGGTGCCGTAGACCGT 6953961 28 100.0 33 ............................ CTGGGGCGGGGCGGCGGGCACAGGTCCAGCGAT 6953900 28 100.0 33 ............................ CTGCACTGAGGCCAGCGCCGGTCCGCCGATCAG 6953839 28 92.9 33 ........................T.T. GCAGCTCGGCCTCTGCCGACGCCTGGGCATCGC 6953778 28 92.9 0 ...........G...............T | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.3 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CGATCGTCGTTCCACTCGCCGCGTTCAGCTTCACCACGCTGTCCAGCATGTCCTGGTGGCGGAGCACCGACAACCGTCCGTTCCTCCTGGGTCGCAGGCACTCGCGATTCATGATGATCTTCGTCGTAGCCCTGTCCCTGATGGCCGGCTTCTTCGGCTCCGCCCACCAGAACACCGTCGCCCTGCTGCTGTCCGCGATGGTCACGACCGCCGGCATCGCCGGCCTGTGGCTCCTGCCGCCTGCCTTGGCGCCGCAACTGCTCGATCTACGCCCGAAAAAGTCGACGCCCGACCCGTCCTGACGACGCCTTGAAGCGGCGTCCCCGCTTCCTCCTTGTGACACCCTCCGACTCCCCACGGTAGGCGAGCCTCTCGCGGAGGTCGCGTACATCGCGCTCTCTGAAGACGATCCCCGCCATTCGCTCCCGGCCCACGAACGAAGGGTGACGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : CAGTTTCGGAACGGGCGGGCGGCGCCTTGTCGGGTGGGCCTCCGGGGGCCTCCTCGGCATCCGCACGCCCCCTACCGTCCCAGCCTGGCCCGACGCACTATGGCTCTCCCGGCACACCCGCCGGTCCAAGCGGAGGGGCGGCAATTAACGCCCATCGTGTGGAGCGCAAGCGCTGCAACAGGGCTCTGGGTGGGTGTGCAGTCAGACGTGCGGCTGGTCATGCGTCGCCCCGCTGCCCACCGCGCCGGTAGCCTCGCCGTATGAGTAGGCCGCCAGAGATCACCCGCACCGAGTGCCGCCAGTGCGGTACCGAGATCTACGGGGTGAACGGCCGCTACTCCTGCACCGTGTGTGGCTGGGTCAACCCTTGGTACGAGGGGCACGGCGCGCTGCCCACTGCCCAGGACGACCCTGACTACCCGCGTCGTAGAAACGCCCGCTGATCTACAGCAGGCCGAGGTCCGTGTCCGGCCGGCACATACTGCAGGCCTCCACATTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 6977976-6977337 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUVY010000001.1 Streptomyces albidoflavus strain LGO-A19 A19_AS2_SC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6977975 29 100.0 32 ............................. CATCATCGAGGCGGGCGACGACGCGACCCGCG 6977914 29 100.0 32 ............................. TCGCTCACCGGATCTGCTGCGGGACGGCGGGC 6977853 29 96.6 32 ............................G GCGCTGGGCGCGCTCGGCCTCCCCACCTCCGA 6977792 29 96.6 32 ............................G CGTGTATCCGAAGCGGTGCAGAGGCGACTGCT 6977731 29 100.0 32 ............................. CCCAACCCGGCGCCACACACCCCGATCCCCAC 6977670 29 100.0 32 ............................. GCCGAGAGCGGCCGGGCCTGGACGCCCCGCGT 6977609 29 100.0 32 ............................. TCCCCGGAACCCCACGGCTGACGACGTTCGCG 6977548 29 96.6 32 ............................G CTGCCGCTCGACGGCGACCATGGCCAGCTCGG 6977487 29 100.0 32 ............................. TGGCAGCGGGTGGCGTTCGTCCTCCCGCTCGT 6977426 29 89.7 32 ....A........C..............T CCGCAGGCGCCTGTCTCCGGGCCTGCCGCGTC 6977365 29 96.6 0 .............C............... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.8 32 GTCGGCCCCGCACGCGCGGGGATGCTCCC # Left flank : GTGGGCGGAAGCGGTCCGCGATGCCGTCCGACCTGCGGCGTAGTATCCGGCCGTGGACATCCCCGACACCTTGATCGACCTCCAGCGCGCCGCCGACGCTGAGTGGGCGCGCCTCGCCGAGCTGACCGACAACGACGAGCGGGGGCAGCAGGGGCGCGCGTGGTACGACGCTGGCGCCCGGGCCCAGGCCGCCGTCACCGAGTGGGCGCGTGAGGCCGCGCGGCAGTCGGCCCCGCACCCATGGAAATCTCGCTCGCGACAGTCCTCGCCCTGGCGCTCTGCGGCCGGCGGGCCCACTGGGTGCTGGGCGCACGGCAGTTGCCCACCGAGGCACATGCGTGGGTGTGGACCGAGAACGGCGCATTCGGGCTGTCCGGCCGCGACCGCCCCGACCCCCGCCGCCTCTGGGCCGGCGCCCTCGTCGCACCTCCCGTGCCGAAAGGGTGACGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : TCTCGGGGACCATCCCCTGAGTAGGTGTTTGGGGACCATCCCCTGAGCTTGTTCTTTATCTACCAAGATCTTCCGGGCTTACCGATGGCCTTGAGGGTCTCGGGACGTTTGACGGTTTTGCCGACGTCGTAGCGGGGTGCCCGGCGCTTGTTCTTGGCACCGGGTGGCCGTCCGGGGCCGGCGCCGCGGGGTTTGGGAACACGGGCCGGGCAGGCGAGGTGAGCGCGGATGTTCCTGAACCCCCGACGGACCCGGGCGGGGGTGAGCCGGTCGGAGGCGGTGGGTTTCTCCCAGGGCCGGCGGAGGTCCGCGGCGAGGGGCCGGGCGAGCCGGAGCTGGGTGTGAGCGACGATCAGGATCCAGGTCCAGCGGTCCGCCGCCTCGGGAGTACGTAGTCTCGGGGTGGTCCAGCCCAGGGTCTGCTTCGCGAACCGGAAGGTGTGTTCCAGGTCGAAGCGGCGGAGAAACGCCTGCCAGAAACGGTCCACATCGTCCGGGGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGCTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 6983108-6981956 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUVY010000001.1 Streptomyces albidoflavus strain LGO-A19 A19_AS2_SC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================================================= ================== 6983107 28 100.0 33 ............................ TCGCCCTCGCCTTCGGGCTCGCCGTCGGGGCGT 6983046 28 100.0 33 ............................ GACGACGGCGCTCCTGGCCCTGTCCCTCTCCGG 6982985 28 100.0 33 ............................ CTACCCGTTCACGTTCGTCCAGGGCGACGCCCT 6982924 28 100.0 33 ............................ CGCCTTCCTTCCGCTGCTGCCGGTCCTCTCGGA 6982863 28 100.0 33 ............................ GTTCCTCCTGGGCCTGTCCGTCGCCGGCGCCGG 6982802 28 100.0 33 ............................ GGCCGTCCACACCTACCGACTGCCCTACTGACC 6982741 28 100.0 33 ............................ GACGATGGCGGCGTCCCGCAGCGCGGGCTGGTG 6982680 28 100.0 33 ............................ CCACCCCAGGCTCCGCGCCGTCCGGCCGACCGG 6982619 28 100.0 33 ............................ CTCGACGGTGGGGTCGAGGGCGAGCCACAAGGC 6982558 28 100.0 22 ............................ GTCGGTGCTGCTGCGGACGATC Deletion [6982509] 6982508 28 85.7 15 C....TA.G................... CTCGGTGCCGTACTT Deletion [6982466] 6982465 28 96.4 35 .............G.............. CCCCCCCGACCCCGCCTCGGACCCGGCCGAGGTGG 6982402 28 96.4 33 .............G.............. GGAGGAGGGCGCCGCCCTGAGTCCCCGACTCCG 6982341 28 100.0 33 ............................ GGGCTCGTCGTTCACGTTCCGCGTGCTCGATGG 6982280 28 92.9 33 .C...........G.............. GTACCTGAAACCGCAGCGCCTCTTCTTCGTCGG 6982219 28 92.9 205 ...........G..............T. TCTGTCCGAGCGGGACGCCGCGCTCAGCGTGAAGTCGGCCCCGCACCTGCGGAGGCACCCCGCTACCTGCGGCGAGGCTCGCGGGCCACGACGTGTCCTCTCCGCGCGAGCGGAGGTACCCCGTTGATGCCGTGACCGAGGACGACGACGCCCTCTCCAACGTGAGCGGAGGAAGCCCGCATTAGGACCTCGGCCAGGGAAAAGA 6981986 28 78.6 0 CGG........G..T...........T. | TT,T [6981976,6981979] ========== ====== ====== ====== ============================ ============================================================================================================================================================================================================= ================== 17 28 96.6 42 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : ATGCGGGCGTTGCCTTACCAAGGTCGTGGACAGCGCAAAGCCACGCAAACAACCTGCGGCCTCGCCCCGGACCACCGGCCACCTCGTCCAGCAGGCCCCGCGTCGAAGGCGCAAGGAAGCTCTCCCACAGCCGCTCACCCACAGCCCCGGTATCAAGCAGATGCGACACAAGAAGATTCGTCTGCCCACCGGCACGCTCCGCCGACTTCCCCCACAAGACCCCTAACGGGCCCTCCACCGACTCCAGCGGCACCCTTGCATCCGGCACGCCGGACCACCCTTCGCTCAGCACTCACGACTGCCCGGCACAGTAGAGGACACCACTGACAATTGACGGCGGACGGCCCAAAGACGAACATCCCCCACGGCGGGCGCCCGCACCACGCGGTCACACACCGTGCTCCCTGAACTCCACCACTCGCTGCCCGGCCCACGAACGAAGGGCGACGCACATGAATGAAAATGAGGCACTCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : AATCTCACTGGGGAGCGGCGCGGTCAGCGTGCGGCTGTTCCCGCGCTCGCGGGGATGGTCCTTGGCGGTCATTTCGGCGAACGGCACGTTGGCTCCGTACTGAGCTGAGCACCCGCCGGGCAGAGTTATTCCATCCGACCAAGGGAGAGACTGCAGTGTCGTCCGTTCCCCGCTCAGAACGATACGAGAACATCCCGCCCGCCTTGGTGTATGACATCTTCGCGGAGTTGGCCACCCAGCTCACCGGTCGCTACATCCGTCTGTCCGATACCGCGCCGTCTGCCGCGGAGCGGGACCAGTGGTGGCAGAAGGTGCTGGAGCTGCGCCAGTACAAGTGCGCAGTGCCCGCGCGCGACCGGGCAGCGTTGATAGCCCACATCAGCCAGTGGGAAGCGGAACTTTCCCGCCTTCGGGGCGCTCACTGTGTCTGAGGGCCGGGACTACTACCTCGCTGAGGAGGATCAGTGGGGTCGGGAGCGCAACGCCACCACAGCCAGCTG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 6993282-6995528 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUVY010000001.1 Streptomyces albidoflavus strain LGO-A19 A19_AS2_SC1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================================================================================================== ================== 6993282 28 75.0 117 .G......GT..A..A.....C..A... TCTCCGCTCGAAGGCCAGCACATACACAAGATCGACAGAGCCGGAACTGATCGGTACACCGCAATGCAACTAAATGAGAACGGCAGACCGCTCAGATAACGCCGCAGGTCAGCAAGT AA [6993300] 6993429 28 100.0 33 ............................ GGCCGCCGAGGTCTGGGCCGACGACGCCTGTGT 6993490 28 100.0 33 ............................ CTCCGGTGATCGATTCCCGAGGTGCCAGTGTGC 6993551 28 100.0 33 ............................ GGCGCTGGCCCACTGCGGGTCGTACGGCTTGGC 6993612 28 100.0 33 ............................ GAAGTCGTGCAGCTCCTCGGTGAGCTTGCGCCA 6993673 28 100.0 33 ............................ GTACCTGCGGGCGGAGACGCCCTCCGGGATGCC 6993734 28 100.0 33 ............................ CCGGTGACACCACGTCCGGCGTTCCGGGATGCG 6993795 28 100.0 33 ............................ GCTCTTGAAGTCCTCCTCCAGCGCCGTGAGGCT 6993856 28 100.0 33 ............................ CCGGTCTACGCCGACGGCCAGCCCTGGCCCGAC 6993917 28 100.0 33 ............................ GTGGGCGGCGGCTCCGGCCAAGTCCCGCAAAAA 6993978 28 100.0 33 ............................ GGCGATCGAGAAGCAGATGGAGAAGATCGCCAA 6994039 28 100.0 33 ............................ CAGGCCCATTTCGATCTCCCTCAGGTTGTGTCA 6994100 28 100.0 33 ............................ CGCCCCCCACGACAGGGGACACGACAGGCGGCG 6994161 28 100.0 33 ............................ TACGGCCTCGGGGTAGCCGACGTGGAGGCGCGG 6994222 28 100.0 33 ............................ GCGGGGTCGGCACTCTTCGGCTATCTGAAGAGG 6994283 28 100.0 33 ............................ CGGCCGCCTGGAGCTGGGGCCCAGCTCAGGCCC 6994344 28 100.0 33 ............................ CCGTGACGACCGGACGATGTGCATCGTCGGGCC 6994405 28 100.0 33 ............................ GGACCGGGAACCACGGCCGCTCGCGCCGCCCTC 6994466 28 100.0 33 ............................ GCCCTGGACGCGGAGCGCGGTCGCGGCCGACAC 6994527 28 100.0 33 ............................ GCACCTGGGCGCGGGTGAGCGGCTCCACCCGCG 6994588 28 100.0 33 ............................ CTCCTTCTTCGCCCGGCGCCAGGCGCGGCCCGC 6994649 28 100.0 33 ............................ GATCGAGTCCGGGGAGTACCCGCGCGGCTCGAT 6994710 28 100.0 33 ............................ GCGCCCAGCCCACCCTCACCATCCGCCTCCCCA 6994771 28 100.0 33 ............................ GGTCACCTCGGCCCCGGCGGCGCGCGGCGCGGA 6994832 28 100.0 33 ............................ TGCAACGACGGACCAGCTCATCGCGTGCGCGTC 6994893 28 100.0 33 ............................ GCACGCGACGGAGGGCGGCTTCCGCGACCGTCC 6994954 28 100.0 33 ............................ GACGACCGCGACCGAGTACGCGGCCAGGGTGGA 6995015 28 100.0 33 ............................ CTCCGGGGAGAGCCTGCTCCCCGCCCCGGAGTT 6995076 28 92.9 33 .................T.....G.... GCGACATGCCGCCCGCGCGGCCGTCGCCGAGGA 6995137 28 96.4 33 .......................G.... CAGCCACTACAACTACCGGGACACCGCCGCCTT 6995198 28 92.9 33 ...................A...G.... TCTTCGCGGGAAACGGGTGCGGGCGAACTGCCC 6995259 28 100.0 33 ............................ GTCGTCCGAGGGCCATTCCTGGGTGGTGGAGCA 6995320 28 100.0 33 ............................ GGCGCGGCCCACCTGGTCGCGCGTCACTCGGTC 6995381 28 92.9 33 ......................CG.... GAGGTCATCCGCGACGGCGGCCGGACGTTCGCC 6995442 27 82.1 32 .....T.T........-A.....G.... GCGCGCCACGCAGGACCACTGGCGCACCTGTT 6995501 28 92.9 0 ..............C........G.... | ========== ====== ====== ====== ============================ ===================================================================================================================== ================== 36 28 97.9 35 GTCGGCCCCGCGCCTGCGGGGGTTCTCC # Left flank : ACCGCATCGCCGACACCAAACTCCTCTCACGCATCGTCACCGACGTCAAAGCCCTCCTCAATCCCCCCGGTACCGACTTCGACACCCCGGAGACCAGCGCTCTCTGGGACGAACACGTCGGCACAGTCGCCGCAGGCACCAACTGGTCCGCACAAGACACTCATCCGGCCACCCGCTCACACCTTGACCTCTCCCCAGCTGCGCTCGGAGAACAGCACATCGCCATCGTCGGACCAGAGTTCGAAGACCAAGCCCCGCCCCCGGGACAACAGCCATGACCGTCATCATCCTGATCGCGGCTCCAGAAGGCCTACGTGGCCACCTCACTCGCTGGATGGTCGAAGTCAACGCTGGGGTCTTCGTCGGCAACCCCAGCCGACGAATCCGCGACCGTCTGTGGGAACTCCTCACCAACCGCATCGGCGACGGTCAAGCCGTCCTTGTCGAACCCGCCGCCAATGAACAAGGCTGGGCCGTCCGTACTGCCGGCCGTGACCGCT # Right flank : CCTTCCCTTGGCGTACGGCGTCGGGGAGCCAGCGGTCGGCCCGGCCGACTGGCAGTCGCCCTCCGGGGCGGCCGCGGATCGCAACCGCCCGGCAGGGGAAACCCCAGGCCTGGGGCTCAGTCGTCCCTACCTTGTTGATCGGGCTGAGCGAGCCATTCGTAGGGTTGGCTCACCCAGGGGTGCCGGGTGTGGCTTTCAGTCGTCTGCCGTAGTTGTGGCTTCCACCGATTCGCCGCCCGGCGCCCCACGACGACTCGGCTGCTCATTAGGAATTGCGGCACTGATCGCTCAGTAGGGACTCGACAGCGAGGTCGTCCGTGGTACCTGTACGAACACGACCTGCGGAGTAGCGAGTGACAGCGATCTGGGCCGGTATCGACGCCGGGAAGACCCATCATCACTGCGTGGTGATCGACGACACCGGCAAGCGGCTGCTGTCCCGACGCGTCGCCAACGACGAGAGCGAGCTGCTCAAGCTCCTCGGAGACGTCCTCGCCCTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGGTTCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCTGCGGGGGTTGCTC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 7046099-7045306 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUVY010000001.1 Streptomyces albidoflavus strain LGO-A19 A19_AS2_SC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================== ================== 7046098 37 89.2 36 ............C..T..........C..G....... ATTCTCCACGTGCCGGTCCAGTTCGTCAGGCGCGAG 7046025 37 91.9 36 ............C....A....A.............. CAGAGCACGTGGCGCGGCATCACCATGCCCAACGAT 7045952 37 94.6 37 ....T.......C........................ TCCGGGTGCCCGCTGAGCGCCTGCACACTGACGAGCG 7045878 37 94.6 37 ............C.T...................... GAGACGCCCGTCAGCGGAAGCCAGGGCGGCCATGTCG 7045804 37 91.9 62 ..........T.C.........A.............. CTCCGGGGCGGCCGAGGATCGCAACTGGCCGGTCCAACGGGATCAGCCCGCAGGCCGTCGCC 7045705 37 89.2 36 ..........T.C.T............A......... GTCCTCCTGCCCCTGGCGGCGGCGGTCGGCCTCCTC 7045632 37 100.0 35 ..................................... TCCGCCCGCTCCCTGCAGGCCGAGCAGGGCCCGCG 7045560 37 100.0 36 ..................................... GTCGGCGCCGCCGGTGAGGGTCGCCAGCGCGCTGCT 7045487 37 91.9 36 ............C.T.......A.............. CTCATCGCGGGCGGCACCGGCTCCGGTAAGGGAGAG 7045414 37 86.5 35 ............CC....A...........C.C.... CACATCTCCTGGCGCAGGAGCAGATGCAGGTCGAG 7045342 37 94.6 0 ............A........A............... | ========== ====== ====== ====== ===================================== ============================================================== ================== 11 37 93.1 39 GTGGCGGTCGCCTTCCGGGGCGGCCGAGGATCGCAAC # Left flank : GAATCCTGTCGACCGGGGCAAGCACGGCTCGAAGATCCACCTGATCACGGAACGGTCCGGTCTGCCTATACCCGTTGGCATCTCCGGGGCCAACCTGCACGACAGCCAGGCCCTGATCCCGCTCGTCAAGGGCATCCCGCCGATCCGCTCACGCCGCGGACCCCGGCGGCGCAAGCCCGCCAAACTCCACGCCGACAAGGGCTACGACTACGTCCACCTGCGGCGATGGTTACGCCAGCGCGGCATCACCCACCGCATCGCCCGCAAGGGAATCGAGTCCTCGCAACGACTGGGCCGCCACCGCTGGACCGTCGAACGCACCATGGCCTGGCTCGCCGGCTGCCGCCGCCTCCACCGACGCTGCGAACGCAAAGCCGACCACTTCCTCGCCTTCACCAGCATCGCCTGCACTCTCATCTGCTACCGCCGACTCACCAAATGAGATGGGGGGCCGAGGATCGCAACTTCCATGCCGACGGCGCACGGACGTGCTGCTCGTG # Right flank : CTCGGCGGCCGCCAGGACGCGAAGCCCCCGCGCGGGGTCGCGGTCGCCCTGCATCGACGCGGCCTCGCTCGCCCCGCAGCTCGTCCTCGCCGGGCACCCGGTCACCGACGTGGCTGCCCTGCTTCGCGACCACGCCGCGACCGCCACCAGCCCCGCCACCACCACGGCGTACCTGGCGGCGCTCACCGGGCACTGGCACCGCAACGCCCGGCGGCCGGCGGCTGCCGGCGCCCCTGGCCTGCGGACCTACCAGCACCGTGCCGCCGCAGCAGGTCTCGCCCTCCTCATGACCCGCCTCTGACCACCGTCTCCGTGAACTCGCTCTCGGCGTGACCGGGTTCAGCCGAGATGGCGGCGAGGCGAGGAGGTACTTGCCTCGCCTCGCCCGCGAAGGGGAACCAGCGCGCTCGTCGGAGGGCTCCGCTGGTCGAACCTTGTACGCCGCCTGACAGCGTCCGGCGGGCGGCACGCAGCCACCGCCGGGCCCTCGCCCGCGCCGC # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.15, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCTTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCTCCCGGGGCGACCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-14.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //