Array 1 1946-413 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAABNQ010000126.1 Bacillus sp. HF117_J1_D NODE_537_length_1979_cov_41.827963, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1945 29 93.1 36 T.......A.................... GAAAATATTATGGAGTTTGACTCCGTGACGATCACG AGTT,A,C [1927,1932,1939] 1874 29 100.0 36 ............................. AGGCAAAAATATGAAATTATTGTCCAAGCAGGTGAC 1809 29 100.0 36 ............................. CCAGCCAAGAAAGTCAGCGAGATTAATGCAATCGGC 1744 29 100.0 38 ............................. GTTAATCAAATTGTTTGCAATAGCTGTCAGCAAATGAG 1677 29 100.0 37 ............................. GAACCATCGCCGCTACCATCCGCAAAGGTGGAAATTC 1611 29 100.0 36 ............................. TTCCTTGATAGTCGATAGCCGTGCCCCCAGATGTTC 1546 29 100.0 36 ............................. AAAATAATGTCTAGTGCTCCTTGGATGGTGTCTTTA 1481 29 100.0 36 ............................. AAAATAATGTCTAGTGCTCCTTGGATGGTGTCTTTA 1416 29 100.0 35 ............................. TTGGGTGAAATATTAAATGATTACAAGCGCACAGA 1352 29 100.0 38 ............................. CAAAAAGAGAATGGTTATGCGCCAATTGCGAACGAAAT 1285 29 100.0 36 ............................. GTGAAAAAATTTGAAAGCAAACCTTCTGTTTTTGTG 1220 29 100.0 35 ............................. TTGAAAAGACAATGGTTTTTCCACAGCCAGTCGGA 1156 29 100.0 35 ............................. TTCATCATTTAAACGGCAAACTATTTCTAAATTCC 1092 29 100.0 36 ............................. TGGTGGAATGCAAGACATGGTAGACCATCACGTCAA 1027 29 100.0 37 ............................. GGTACTGCAGGCGGACGGTGCATGAGTGTTGGTAGCA 961 29 100.0 36 ............................. ATCCAAGAAAAATGTTCTTGTGGTAGCGGCTCTTTT 896 29 100.0 35 ............................. GGAGAATTTGGATGGTGAAATATGAATCTCTCAAA 832 29 100.0 35 ............................. TCGTCAAGGTGTCGTAATGCTTACCGCTTGATCCA 768 29 100.0 37 ............................. GTGGTCAAATAAATCTTTTTAACGTGGACGGTATTTC 702 29 100.0 35 ............................. ATATATTCAGCTAACTATCTAAAACTGGAAAAGCA 638 29 100.0 38 ............................. TTGAAATGGCAAGGGAAACTCATAAGGCTTTCACTGGC 571 29 100.0 36 ............................. GTCCAATTTATACACTAGCACAGTCTGTATTTTTCC 506 29 100.0 36 ............................. AAAGAAGAAAATAATCTACCTTAAAAAGAGGTGTTG 441 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 24 29 99.7 36 GTTTTATCTGAACGTAGTGGGATTTAAAG # Left flank : CTAAACCCAGACCGGGCATGAATTTAGGTGAGC # Right flank : GATATATTCAGCTAACTATCTAAAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGAAAAGCATTGTTTTATCTGAACGTAGTGGGATTTAAAGAAAGATCCCACGGCCATATGCGTCTTTGCTAAAAATGGTTTTATCTGAACGTAGTGGGATTTAAAGAGATCAAGCCAAGATGTATGCAGTATCCAAAACGGTCTGTTTTATCTGAACGTAGTGGGATTTAAAGATGCAACAGGCTGTCCCAACTTCCGTGCCGACAGCTACGTTTTATCTGAACGTAGTGGTGTAAATCAGCACATTATTTCCGACACCTAATTTCAAATTAATCCAGGTCAATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 4655-8714 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAABNQ010000054.1 Bacillus sp. HF117_J1_D NODE_120_length_25130_cov_46.030469, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4655 36 100.0 30 .................................... TCGAATCTATCGTGCGTGTATCGTCTGTCC 4721 36 100.0 30 .................................... TTATTCGACCATACTGGCTCGATAGATTGC 4787 36 100.0 29 .................................... ATTATGCATTGTTTTATACATCGTTGATA 4852 36 100.0 30 .................................... GTAAGCTTCCGCAAGAAGTTCCGGCTGAAT 4918 36 100.0 30 .................................... GATGACTTCGAAATAATCGGATATGACCCG 4984 36 100.0 29 .................................... TTAGTGTCATATAATCCGATTTGATACCG 5049 36 100.0 30 .................................... TCACCGATGTATCCATTTACGGTCACAAGG 5115 36 100.0 30 .................................... CGTCATTCTGTCCGAAAATAAGCGAGGATG 5181 36 100.0 30 .................................... ACAAGTCGAACGCTTGTCAAGCGGTGCGCC 5247 36 100.0 30 .................................... AATGCCCTAAACGTAGTTCCTTCGGGATCC 5313 36 100.0 30 .................................... CCTTCTACGGTAATACTCGCCGACCAATAA 5379 36 100.0 30 .................................... CGGACCTCGTTAGTAAACAAAGGAGGTCTA 5445 36 100.0 30 .................................... TCAGTTTCGTAAATTGCCTGCGTACGCTTG 5511 36 100.0 30 .................................... ACTGTATCCTGCATTTGTCTTACTTGTTGT 5577 36 100.0 30 .................................... AGGCCCGTCGCGGTAATGCCCGTACAGCCA 5643 36 100.0 30 .................................... TATGACACACTCATACTCTTTATCACCACC 5709 36 100.0 30 .................................... CGAACTATAGCCAGTCTATAATATCGGCGG 5775 36 100.0 30 .................................... CTTAACAGCCTAGGGGATATTGACGTAGAT 5841 36 100.0 30 .................................... CGGATGTCCGCGCCGTATTCGCCCAGTTTC 5907 36 100.0 30 .................................... AAGCCGTCGTAATTAACGTGACTTGATAAT 5973 36 100.0 30 .................................... GAACTTACGCGTTCACTGATAGTCGAATAT 6039 36 100.0 30 .................................... GCCGCGTCATGGATTATCGGAATGGTAGCG 6105 36 100.0 30 .................................... CGTGGCGCACTTGATTCGCCAACGGACGGC 6171 36 100.0 30 .................................... TATTCCTCGTCGTCGTCCGCATAACCCTTC 6237 36 100.0 30 .................................... ATAATCTTACCGTTAAGAACTAACTAAGGA 6303 36 100.0 30 .................................... CATACCGACTTCGGCTTGTGCGTGCAAGAT 6369 36 100.0 30 .................................... CGAGTTTCTACTGATGATCCAATATAAAAG 6435 36 100.0 30 .................................... TCAAATACGAAAGCCTTCGGCTTCTTTTCT 6501 36 100.0 30 .................................... GTGTCGACGTCAGGGAAAGCGCTCATATAA 6567 36 100.0 30 .................................... AAACTACGCGTTATAGAAGGCGAGGAAATC 6633 36 100.0 30 .................................... TCGCCTTCCTTTAATGTCGCCTTCGGTTGC 6699 36 100.0 30 .................................... GATTGAGGCGGAGGAAAAGCGAAAGCAGGC 6765 36 100.0 30 .................................... CGGTACTTGCTATTCGTGGTTAAATTCCGC 6831 36 100.0 30 .................................... TCCAGCTTGTAGGCTTAGCCAAGCGATCTA 6897 36 100.0 30 .................................... TCCACAACATGAACATGTTGCATGTAAAAC 6963 36 100.0 30 .................................... CTACCTGACGATGATGCCGCACCTTTCGTG 7029 36 100.0 30 .................................... GTTCCATTGCGATAAACATTATATGTTGTC 7095 36 100.0 30 .................................... CCTGTCAGTGTATTGATGACAAGGGCTTCT 7161 36 100.0 30 .................................... ACGATGAACACATGAACGTGCTGGGAAAAA 7227 36 100.0 30 .................................... GATGATTTTATTAATCCCTTAGATATTTCA 7293 36 100.0 30 .................................... ATACGCTCGCCCACTTTGGCTTTGCGGTCG 7359 36 100.0 30 .................................... GGAAATTTCTGAACTGTATGCAGACTCCCA 7425 36 100.0 30 .................................... AAAGCCCTGAGCTTAAATCAATCCCAGGAC 7491 36 100.0 30 .................................... CCCGGCTACAGGTGATAAAACCGGTCCTAT 7557 36 100.0 30 .................................... CATACCGACTTCGGCTTGTGCGTGCAAGAT 7623 36 100.0 30 .................................... GCTTTTGCTTCATCAAAAATTATACCCGCT 7689 36 100.0 30 .................................... TAAGTCGGTACCGATGGACAAGCTGGCACC 7755 36 100.0 30 .................................... AATATTACTGGAACAACCATAAGAACTGAA 7821 36 100.0 30 .................................... TCATCACCAAACACGCAGCAAATCCCGGCT 7887 36 100.0 30 .................................... ACTCGGTTGTTTTCTTTCAAAAATTGCTGA 7953 36 100.0 30 .................................... AACGAATACAGTATACGCCACTGTGAGGGT 8019 36 100.0 30 .................................... ATCTGATAAACCCTCCTATTAAAGTTGATA 8085 36 100.0 30 .................................... TGATTCGCGGCATGAACGCAGTTATCGTAC 8151 36 100.0 30 .................................... CGCCGTAATGGGACAAAGTTTGATTGATTC 8217 36 100.0 30 .................................... CAGTCGCGGACAGCTTACGAGCGCCGCGGC 8283 36 100.0 30 .................................... GTACCGTGTGAAATACCTAATTTTTTGCAG 8349 36 100.0 30 .................................... AGCACTTATCAGACCAAGAAAAGCAATTTT 8415 36 100.0 30 .................................... GCTAAAAGAGTGATTAATATTGATTTTTGT 8481 36 100.0 30 .................................... TCGCTAACAAGCTTCTTGACCCACATAGAA 8547 36 100.0 30 .................................... GTCGAGTCAGCGGGTTTGCCCACAAAGTCG 8613 36 100.0 30 .................................... TGGCTCAAGCCTGAGGCTTTCAAGTGGAAA 8679 36 83.3 0 ...................C.......G..C.CAC. | ========== ====== ====== ====== ==================================== ============================== ================== 62 36 99.7 30 ATCATATCACATCAAGATTTACAGGGGAATTATGGC # Left flank : CAGAATTAACGAATTTAATCGTTCATACGTATGAGTAGATACATGAGGATTATTGTTTTCTTTGATTTGCCGGTAGTACTCCCTAAGGAAAGAAAAGCTTATTCTCGTTTTCGCAAGTTTCTATTGAATGACGGATATACAATGCTTCAATACTCAGTATACACCAGGATTTGTAACGGTGAGGATGCTGTCCGTAAGCATATGAAAAGGCTGCAGGAAAATATTCCTCCTGTTAATGGTGCAATTCGAGCTATGAAGGTAACGGAGAAACAATTTGCAAATATGGAGATCTTATTGGGCACAACAACAGCCGAAGAAGAACTAGGTACGAATAAAGTGGATTTCTTTTAGATAATACTTGCAATTTATTATGCAGGTATTTTTTTCTGTTATTTCACTAAAAAATAAAGAAAAGATGACAAAAGTTAACGATAAATGCCTCTTTTTTGGAAATACAAAACCCTTGAAACGGGGAAGAATCAAGGGTTTTGCGGCCATGC # Right flank : CACAGCATATCTGACACAGGGCATCTGAAACCGGATCTTCCGGGATTCGCATTTGAAGTAAAAACAAAGAAGCACGAGAAAGCAACGGGAAGTATTAGAACTCCTGATGGCGTCTGGAATTCTTCACGCGACCCTCAATTGGTGCAAAGCAAGGCGGCATCTCGCTGTATGAGGGCCATTTACCAAGTATTGGAAAGGGCTTCAAACAGCTTTACTTCCAGACGGAGTCCACCAAATGAAAGTGCAGTAACGGTTTGGTGTAGCGTACAGAATTAGAGTGTAGTAGATATTGGTTTTATGCCCTTGTTGGGAAAATTATGACACATATTTTTTTGTGGTTGATTGTAATTAAAGAATAAATGTGTTATAAAAAGGTAAGAAGTACGTATAGTAAAAAAAGACCGCAAGTGCTGCTAACACTCACGGTCTTGTACAATAGTTGCCTCTCGAAGAGTGGCAGGCTCTATGGTGTAGAAATAGGCCATCCCCGAAACGTGCGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCATATCACATCAAGATTTACAGGGGAATTATGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 625-70 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAABNQ010000037.1 Bacillus sp. HF117_J1_D NODE_79_length_35086_cov_45.738803, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 624 28 100.0 38 ............................ GTTGAATTTTTTAAACGGGTTCGAGCGACCCCTTGCTG 558 28 100.0 36 ............................ GCATTGGTGTCAAAGGGCAGAATTAATCGATCATAA 494 28 100.0 40 ............................ GTTGAGCCAACGCAAATCTTTCCCCATCTATTACAGCATC 426 28 100.0 39 ............................ GGACAGCGCTTACTTGTCTCTTAATGGTGGAAATCTCAA 359 28 100.0 36 ............................ CGAAAAAGAAATTGAAGGTAGGAAGAAGTTTGAAGC 295 28 100.0 38 ............................ CGATTTGCCATTTGTAATTTAAAACAACATTAGAATCC 229 28 100.0 39 ............................ CGTCGTGGATACGAAAGAGGAAATACAATCAAAGGCGAG 162 28 64.3 37 .CAA...AG.GTTA.T............ CGTCGTGGATACGAAAGGGGTAAAGACCGATGTGTTT 97 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================== ================== 9 28 96.0 38 CTTTAAATCCCACTACGTTCAGATAAAA # Left flank : AATCCCACTACGTTCAGATAAAAGGTGAGCAAAAGAAGTAGGGCCAAAAGTCGCTTAGCTTTAAATCCCACTACGTTCAGATAAAAGGCACTAGCCAATGGTTATACGGTGCGCTTCGATGACCTTTAAATCCCACTACGTTCAGATAAAAGTTCCGCATTTTTATCCCCTCTCTGGTTGATATTCCTTCTTTAAATCCCACTACGTTCAGATAAAAGTGGTACCCATTCACGAAACACCATTTCCTCTGTGATCTTTAAATCCCACTACGTTCAGATAAAAGTCAACATCTCTGTCGATATTCACACGCCGTCTTCTTCTCTTTAAATCCCACTACGTTCAGATAAAAGTTCCGCATTTTTATCCCCTCTCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATATTCACACGCCGTCTTCTTCT # Right flank : ACCGATGGTGTAAAGCTCCACATTATCCCATCCAAAACAAGCCTTCTTTGTTCAAATTCCTCCAGTATGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAATCCCACTACGTTCAGATAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 1329-775 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAABNQ010000037.1 Bacillus sp. HF117_J1_D NODE_79_length_35086_cov_45.738803, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1328 29 79.3 38 A...C..C.G..A...A............ ATGTCTCGGTCATTTCGGACAGTGGCATAGATTGTGAC TA [1312] 1259 29 100.0 36 ............................. ATGTTTTCTCCAGAGGAAATTAAATCCATGTCTTTA 1194 29 100.0 36 ............................. GACAATTAATGTAATGATACTTTCCAATTCGACTTT 1129 29 100.0 34 ............................. GTGAGCAAAAGAAGTAGGGCCAAAAGTCGCTTAG 1066 29 100.0 36 ............................. GCACTAGCCAATGGTTATACGGTGCGCTTCGATGAC 1001 29 100.0 37 ............................. TTCCGCATTTTTATCCCCTCTCTGGTTGATATTCCTT 935 29 100.0 36 ............................. TGGTACCCATTCACGAAACACCATTTCCTCTGTGAT 870 29 100.0 38 ............................. TCAACATCTCTGTCGATATTCACACGCCGTCTTCTTCT 803 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 97.7 36 CTTTAAATCCCACTACGTTCAGATAAAAG # Left flank : AGGAGCCACGACAGCGCCACAAACTAGGGAATCATTTGTCTTTAAATCCCACTACGTTCAGATTGAGTATTGCGGACAGTTTGAGCCAGCAGTGCGGAGTTTTGAGCCATTTAATGCGGACGTTTGAGCCAGTAACTGCGAAGAGGAGATCCACAACCATTGTGCTGCCAAAAATAGCGCGAGTTCTATTATCCGCCACCATTGACTTAACTTTTGTCCGTGTTGAGGAACAATCGTAGGTCTGGCATAAATAATGCCAAATAGGCACACCCGCTCAAATATGATAACACGGACCATCCGATTCTAAACATTCGCTGGCGGGGCCCCCGACCCCTTCCACCAAATGCAAAGAATCGGGCGTTACAGTCAATGGCAAGCAGCTTCGCTGTGGCTCTGAATCTCTTCTTGAAAGAGCGGTTGTACCATTAGTGGCTCTTAGCTTCGCAATTGGTGGCTCTAATCTCCGCAATCGGTGGCTCAAAACTCCGCATAAGTGGCTC # Right flank : TTCCGCATTTTTATCCCCTCTCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATATTCACACGCCGTCTTCTTCTCTTTAAATCCCACTACGTTCAGATAAAAGTTGAATTTTTTAAACGGGTTCGAGCGACCCCTTGCTGCTTTAAATCCCACTACGTTCAGATAAAAGCATTGGTGTCAAAGGGCAGAATTAATCGATCATAACTTTAAATCCCACTACGTTCAGATAAAAGTTGAGCCAACGCAAATCTTTCCCCATCTATTACAGCATCCTTTAAATCCCACTACGTTCAGATAAAAGGACAGCGCTTACTTGTCTCTTAATGGTGGAAATCTCAACTTTAAATCCCACTACGTTCAGATAAAACGAAAAAGAAATTGAAGGTAGGAAGAAGTTTGAAGCCTTTAAATCCCACTACGTTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAATCCCACTACGTTCAGATAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //