Array 1 567913-570521 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039727.1 Bacillus sp. S3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 567913 32 100.0 34 ................................ CCACAAGCTTTTAAACCAATCCGTAAGGGATGAA 567979 32 100.0 34 ................................ TCTGATACGGTCGATTCTATAGGCGATATGTCAA 568045 32 100.0 34 ................................ TGGTATTGCTTGCCTACATCCGTAATAGGGATAT 568111 32 100.0 35 ................................ CACTAAGACCGATCACTTCCCCAGATGATATTCTT 568178 32 100.0 33 ................................ CCTCCTTGTGTCACCCTTGTGTCATCCTTATAG 568243 32 100.0 33 ................................ TGTATCAAATTTTCCTATGGCTGATGAATTGAT 568308 32 100.0 35 ................................ ATCAGAGTCAAAGTATTGTGTATCAGGCAGCTGCA 568375 32 100.0 33 ................................ ATAGATAAAAAGTTTAATAATGGTCAAGGCCTG 568440 32 100.0 35 ................................ TACCAAAACCGAATCAAGAGTAGCGGATGAAGGCG 568507 32 100.0 34 ................................ CATCCTTTAATATGCATATCACCTAGAGTGATAC 568573 32 100.0 35 ................................ AGCCATTAAAGCAGTAGGAACAATCATCTTCATCC 568640 32 100.0 34 ................................ CGCCAACGCTCCAAAGGTCAACAACAAAGCAGCC 568706 32 100.0 34 ................................ ATAGGTTAGAAACTCCCTTGCTGTCTCAGGACAC 568772 32 100.0 35 ................................ ATACCAAATATATTTACAATAGCCATGAGCAAACT 568839 32 100.0 34 ................................ GATGAATTGATAAAACAATCAAATGATGGTGATT 568905 32 100.0 34 ................................ ATTATGGGGGGCAAATGCAGTTGATTGTAGAGAA 568971 32 100.0 34 ................................ CACCATCCTTTACTATCCGCACCCATCCTGTGCC 569037 32 100.0 34 ................................ TGAAAAATTCGGCTGACTCTTTTCGTGAGTCGGT 569103 32 100.0 35 ................................ TCAGACATTAGTTTATCTGAGTAAACTGTCCTCTG 569170 32 93.8 33 ..............................TC CTCTTGGCTTATAGACAATTTCAAGTTTTGATG 569235 32 100.0 37 ................................ CTACTCTCTATCGGCTTAGAAAACGGCATAGAGGAAT 569304 32 100.0 34 ................................ TTTTATTGCTTGTTGAGGGGTCAAAGGTGGTAAT 569370 32 100.0 34 ................................ GGCATTTTTGATGCACTTAAAGGTTTACTATTAG 569436 32 100.0 34 ................................ CTTCTTTTTGTCTCGCTTGCTTCGTACGCCTTGC 569502 32 100.0 33 ................................ CACCTCCCAATGGATATGGAATAATTGTCCAAC 569567 32 100.0 34 ................................ TGGTAATATGAAAGTCATTTATTACACCCCCTAT 569633 32 100.0 35 ................................ TTGTCGTATAAAAGGCTGCTGTCCTGCCTCTTGTG 569700 32 100.0 34 ................................ ATTTCCTCTTGAGTATCGGCTTAGAAAACGGCAT 569766 32 100.0 34 ................................ CTCGAATACTTGTGCCATTATCTCACCTCATTAG 569832 32 100.0 34 ................................ ATTAAATTCTATTTGAAATGTAAAATGTCTAACA 569898 32 100.0 34 ................................ TCTTTTAAACACCACTGGATCATATCGTTGTGTG 569964 32 100.0 35 ................................ AAGTGTCATGCATCGTCACCCCTAGAAGATATAAT 570031 32 100.0 34 ................................ TATGCTAATGGTGTGTCCGAGTGATGGGTTGGCC 570097 32 100.0 35 ................................ TTTAAAGGCAGGAAAGAAATTGACCTGGAGTTATT 570164 32 96.9 34 ...........T.................... TCCAAGATCATCAAACAGTCCGGATATAACCCCA 570230 32 100.0 31 ................................ TTGTAAATCAGAACGGAATCCACCAGTTCTT 570293 32 84.4 34 ....G.....GT...G..A............. AACAACACGAGCGGGGCAGTAAATGGAACCCTAT 570359 32 90.6 33 ..........T..G.G................ ACGGACATTCCATTTTTCGAGGTAAATTCCCCT 570424 32 90.6 34 .A........T................A.... ACCAAGGCAAGTTGACTTGAGTCCAAACCATGTG 570490 32 78.1 0 ...A.....TTT.......TA......C.... | ========== ====== ====== ====== ================================ ===================================== ================== 40 32 98.4 34 GTCGCACTCCACGTGAGTGCGTGGATTGAAAT # Left flank : GTGTAGCAGCCTGTTGCAAATAGTTTAGATATGAAAAACTAGGGGTAACCCGTGTTATCAAAACATCATTAAAAAAATATTAATGTTATAAATATAAGACAAGAGTGTGGTAACTGGTTAGTACCGCAGCCCAAGCTCTCCTATTGTTTCAGTATTTGAAGGTAGTGTAGATCCCACTCAATTTGGCTACTTTGAAAATAAAACCAGCTGAAATTATTAGGGAAACGGTAGATAGTCTTAGGTTCAATCGGCTAGGTAATAATCATATGAGCAAGGTTGAGCATATTGGTTTGAAAAGAGTCTATCGAATTGGATAATTCCTTAATTTTTTGTGCGAATGTATAGTGCACATTGTTTTCCTGTTAGATTCGCACTTGTTTTTGTGTGTTTTATTACCAAGTATTGGTATAATTATATTGTGTTCTTTAATTATTTAAAGAAAATAGTGATCTTTTGATCAATTATTTCATATTTTTTGGACTTTTTGGTTGAAAATCGCT # Right flank : TAAATATAAACTGCTGTGAAGTTATTTCTAAGCTGAAAAGGGTCAGTCTCCCGATTCGATAATATAAATCTCCCGAATCAGGCGACAGGAGCCCATTGCATAATTGGAGTAATGTCTTCTTTCACACTTCCGAAGGCCCGGCTAAAGAGATAATGGTTCCTTCAGGGAAGGATTCTGTAATGTATTTTTTTATGGATCCCATCAACGGAATAATTGACATGATTAAAGGTCGCTGAGTGTTTATCGCTTGTTAACATCTGGGGCACTTCCTTATAGTGGAGGAAAACCTTGATCAACAGGGATGTGACAAGCACCGGCATGTGGTTATCAAAAAATTAATTTACTGAACATAAATGTGATAAAAGTAGGGCAAAAGTGTGTTATCCATTGACATTATTGGAAAGTAAAGACAATATAGTACTATAGTATGGTTTTTTAAAATTATTGACTGAAGAAATTATTCGTTTTTATAGAATGACTACTAATTGAGATACAACGAG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCACGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 579339-580695 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039727.1 Bacillus sp. S3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 579339 32 100.0 34 ................................ ATGCATGATGCAAACTCCTTTACTGGAAATTCAA 579405 32 100.0 34 ................................ AAGATGGTACTGGTGCATATGTAAATAAAGGTTT 579471 32 100.0 34 ................................ ACCTATTCCGGCACCGCAAGTCGTTCGGGATAAC 579537 32 100.0 35 ................................ AACTCAAAAAGCTGCAGGAAGTTACGTGAAGTTAC 579604 32 100.0 34 ................................ GTTACGTTAGCATTGTGGTATACATCAACTACAG 579670 32 96.9 34 ..................T............. CTTTATCTACTACGTTTGATTGACTGAGATTATA 579736 32 100.0 34 ................................ CTCGACGCTATTGTTTTCCAGTTCACGTCTCTGG 579802 32 100.0 34 ................................ AAATGTCTTGAGAGCAAGCCGCACAGTTCCTAGA 579868 32 100.0 33 ................................ TGCAATGAAAGGATTAAGAACTCCAAAATTATT 579933 32 100.0 32 ................................ ATGCACGAAATACGTTTGATTCCTGGGCACGC 579997 32 100.0 34 ................................ ATCAAAAGTTTGGTGAGTTACACATTCGTTATTT 580063 32 100.0 37 ................................ TCTTTTCTGTTGGAGCTCTTGAGATACCCGGCGACTT 580132 32 100.0 35 ................................ ATCATTTTAGGAGCATGGAAATTAAAAAAGGCAAA 580199 32 100.0 34 ................................ AATGGCTACAAAGGATGATTTGGTTGATCCACGT 580265 32 100.0 34 ................................ CTGAATGAGGAACTTCTCCATTTTGGGTAGTCTA 580331 32 100.0 34 ................................ AACGACTATATCTTACTGTTAGCTATTGTATATC 580397 32 100.0 35 ................................ GGGACACCTGATATCATCAATTACAATCGATTCTA 580464 32 100.0 35 ................................ ATATAATTTGTGCAGCATGCGCCACATTTTCGCAT 580531 32 100.0 35 ................................ TTGCAGAGAGTATTGGGACAGGCAAATCGGATGGC 580598 32 100.0 34 ................................ TTAAATGATTTCTGGACAAAGTCTATGATCTATC 580664 32 84.4 0 .........T...A.....T......G....C | ========== ====== ====== ====== ================================ ===================================== ================== 21 32 99.1 34 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : AGATGAGTATCCACCATTTTTGTGGAAGTAGGTGTATAAGCTTTGTTAGTTTTAGTTACCTATGATGTAAGTACTGTTACTGGTGGAGGAAAGAGAAGGCTGCGAAAAGTTTCAAAGGCATGTCAAAATTATGGTCAACGAGTCCAAAATTCAGTATTTGAATGTAATGTAGATGCCACTCAATTTGCTACTTTAAAAATAAAACTGACTGAAATTATTGATGAAACGGAAGATAGTCTAAGGTTCTATCAGCTAGGTAATAATTATAAGACCAAGGTTGAGCATATTGAAGTGAAAGAATCTATCGATTTGGAAAACCCTTTAATTTTTTAGTGCGAATGTAAAGCGAACATGGTAACCCTACTAGGTTCGCACCACATTTCGTGCGGTTAATTACCAAAATTAGGTATAATAATAGTGTGTTCTTTATTTATTAAAGAAAATGGTGTGTTTTTGATCAATTATGTCGTATTTTTTGGTTGTTTTGGTCAAAAATCGCT # Right flank : CCTTAAGAATCAAATTATTCATACAGTATTAAATTGAAAAAGTCTAAATTTACAAAACCTGAGTATTATTTTAATAAGAAAAGGAGGCGATAAGGTGAAATCAATTGGAATCTTGGGAGTCGGTCAAGCCGGCGGGAATATTGCGGAAATTGCGGCAAGTATGGGCTTTCAAACTGCGCTTATTAATACGAACCAGCGCGATGGAATAGTGAATACAAGAGTAGAAAAGAAATATTTTGTTCCGGGGTATAATGGCGCTGGGCAAGATCGCTCAATTGGATTACGCGCCGTGAATGATCATTATAGAGAACTAATTGAATTTGTCCAGGGTGCTTTTAAAAACATTAAGCTTTTATTAGTAGCTTTTTCTACTGATGGAGGTACGGGCTCTGGTATGAGTCCGTTATTGATTGATCTATTATTAGATAATCTGCCAGGTATCAAGGTGGGGGCAATCGCGGTTGTACCCGATCGAAACGTATTAGCTGGAAATCGAATAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //