Array 1 2321-2648 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAACMQ010000005.1 Vibrio cholerae strain 2012EL-1765 48822_536_Vc_PivertGAT3Mar_, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
      2321	    28	 100.0	    32	............................	ATCAGGATAACCAGATTCATAAAATCCAGTAC	
      2381	    28	 100.0	    32	............................	TGATGGCTCAACGCCTGAAAAACCGACTTTAA	
      2441	    28	 100.0	    32	............................	TAAAGTCCATCGCTCTCGGTGTGGAAATGTTC	
      2501	    28	 100.0	    32	............................	TTGAACGCACGCCATTTGCGTGCCGAATGATG	
      2561	    28	 100.0	    32	............................	TGAACATCAGTTGTGGACTTTCCAACCGGTGA	
      2621	    28	 100.0	     0	............................	|                               	
==========	======	======	======	============================	================================	==================
         6	    28	 100.0	    32	GTTCACTGCCGCACAGGCAGCTTAGAAA	                                	       

# Left flank :   CTTTGGATATCTCCTTCGATTGGCGGCTACGATGTTTCTGTCAGTGGTAAATCATTAGAAAATGAGTTAGTACCGACTCTAACATCATATTTTGGTCGTGGTCCTGATGGTTATAAGCAAAAAAATGCAAACAAAGGCTTTAAGCATCAACCGTTTTGGAGAACAAAGGACTTCCAAGATGTTCAAGCTGTATGTGAAATGTATGTAAAGACAGCTAAGTAAAAAATCACATAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCATTTAGCCGCGGTGGTTGCAGTTGTTGTGTTTGAGTTTGGTGTTATGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAGTTTTAAGTTATTGATTTATATTGATAATAAATCTAGTAAAAAATAAAAGGTTATTTTGGGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAATTTTTATA
# Right flank :  ATATTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGTCAACGCGTAGCGTTTTCAGTCCCAATGAACCGCGGTGGTTATGGTTGTTGTATTTGAGTTTAGTGTTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTAGCTTCTTAAAGGCTAAAATCATCAAAATCCCAACTTCTTGTCCTTAAAAATCAGCTTTTAGTGTTCAAATTGCACAATTTGGCATTTGAATTTTGCTAGATGCTGATTTGGTAGAAAGTGCTGGAAGTTCCGCAATTTCAAAGCCGCTGAAAGCCAACAAGTCTCGATGCTTCAAAGTCGTTGGATGTTCAATTCGGTCAACTTGGTTTCACAAAAAGCAGCATCGTCGCTGAAATCGTGCTTCTTTGTCGGAAATGCGGTAAGTGGCCAACTTAACCTTGAACGCTGCAAGTTTTGGCAGCTCACTTCACAGCTTTTGGCGTTGGACGTGTGTTTGAGTGATG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTCACTGCCGCACAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-8.00,-7.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [80.0-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.51,0.41   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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