Array 1 6770-6086 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOXR01000039.1 Vibrio cholerae strain MGL2619 NODE_39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 6769 35 100.0 36 ................................... ATGCCGCAGCAAGATGATAGTAAAACTCGCTCATTG 6698 35 100.0 39 ................................... AGAAAGTCAGCTGTGTGCTGTGTCCTTGGTGCTGCGGTG 6624 35 100.0 36 ................................... CAAGAACATCTCAACCAGCGGGTACAGGTAAGTTTA 6553 35 100.0 38 ................................... AACACCAATTCCTAATATCCCACCAGCAATTACATCTG 6480 35 100.0 40 ................................... CGTTTTGTAGTGATTAAACATGGTACGCCGTATTGATTCT 6405 35 100.0 36 ................................... CTTTCTGTTTGGTGGTCTATTATACCTTCTGTTACC 6334 35 100.0 33 ................................... TATTTCTTTGGGTCTAAATCATCGATGTTTTCA 6266 35 94.3 41 ....G.....G........................ ATAACGTGATTCGATGCCACTCGGTCTTTTCCTTCTGTTCT 6190 35 100.0 35 ................................... CCCGATTGTCAGCATCAACAATACTTTCCATTGAG 6120 35 88.6 0 ...............................GTGT | ========== ====== ====== ====== =================================== ========================================= ================== 10 35 98.3 37 GCTTCATTAGATAAGGTCGTTCAGACCGTTGAGAC # Left flank : | # Right flank : TTTTTTGCGGGGGATTTGATTCTCGGTATTGATGGTTAACCTAGTTATACTTAAAGCAACAGCGATAACTTGGAAGTGGTATGCGTTTATTTTTGGATACAGAGTTTACCGGCTTGAAGCAAGATGCTGAGCTACTGAGCCTTGCATTGGTCGATGAGCATGGCAGGGCTTTTTATGCAGAGTGCCAAGCAAGGTATGGATATTCAGTGGATAAATGGATTGTTGAGCATGTGCTTGCTCATACTCGCTGGTTATCCTTACCTTCTGGCGCGCCAAGTGAGTGGTTGCAAGAGGGGGAGGTGCGGTATGGTTTCGATAGTGATGAAAATATTGTCCACCAGCTTAAGCACTGGTTAAGTCAGTATGAACGAGTCGAGCTATGGGCTGATTGTCCAGCTTACGATTGGGTGCTGTTTTGCCAGTTATTTGGTGGCTCGCAGTATTTACCTCGTCCTCTCTCTTATGTGGTGAATGATTTCGCTACCTTGCTGACTTTACAA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCATTAGATAAGGTCGTTCAGACCGTTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 864-536 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOXR01000064.1 Vibrio cholerae strain MGL2619 NODE_64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 863 28 100.0 32 ............................ TGCTTGCGTTGTACGTTTGTTTGAAGTGCCAA 803 28 100.0 32 ............................ AGTTCGCGCCAGTTTTCAATGCCGGCCTCTTT 743 28 100.0 32 ............................ TTCAATTGTGCGTGGTCTGGTGAGTTATATCG 683 28 100.0 32 ............................ ACTGGCGGCATTTTGTCCCTAGCTGCTATCTG 623 28 100.0 32 ............................ AGACAGGCCGAAAATGGGTAGCTTGTTACGTC 563 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTAGTTGATGGCAACTTTCGTGTTTTGGGCAAGGTGATAAGGAGTGTTGGTGAGAACGATAAAATTAGCTTGTTGCGTAAAACTGCTATGAGCAAGATGCCTTCTCCTGTATTGATGCAAGCATTTGAGACAATGGCTGGTCTAGGTAGTGAAGGTGGTTTTAACATTCCTGAAATTAAATGGGATTTAGAGGGGCCTGCATTTCAGATTATTCCAGTTGCAATTTACGCATAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTACGGTTGTTGTGTTTGAGTTTAGCGTTATGCGTTGTCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGCTGAGTTTTAAGTTATTGATTTATATTGATAATAAATCTAGTAAAAATAAAAGGTTATTTTGGGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAATTTTTTATA # Right flank : TATTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGTCAACGCGTAGCGTTTCCAGTCCCAATGAGCCGCGGTGGTTGCAGCTGTTGTGTTTGAGTTTAGTGTTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTAGCTTCTAAAAGGCTAGAATCATCAAAATCGAAGCTCAATCGTTCTTAAAACTCAGCTTCTAGCGCTCAAGTCGCACAATTTTGCTTTCTAGTCTTTCTGATGCTGACTTGGTAGAAAGTGTTGAATGTTCAGCAGTTTCAAAATCGCTGAAAACTATCAAACCTCGATGCTTCAATGTTGTTGGATGCTCCACACGGAGAGTTTGGTTTCACAAAGGCTGCATCATCGCTGAAAGTGTGCTTTCTTTGTCGCGGACTCTTAACCGTGGCCAACTTAGCCTTGAGCGTTTTGAGTTTTGGCAGCCAACTTCACAGCTTTTGGCGTTGGACGTGTGTTTGAGTGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 218-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOXR01000168.1 Vibrio cholerae strain MGL2619 NODE_168, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 217 35 100.0 36 ................................... CATTACCAGTTCCGCTCCACCCAAGCATACTTGAAA 146 35 100.0 36 ................................... ATATTTACCATAGTTTCTTTAGGTACATATTTGTAG 75 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ==================================== ================== 3 35 100.0 36 GCTTCATTAGATAAGGTCGTTCAGACCGTTGAGAC # Left flank : AGACATGCCGCAGCAAGATGATAGTAAAACTCGCTCATT # Right flank : CATGCCGCAGCAAGATGATAGTAAAACTCGCTCATTGGCTT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCATTAGATAAGGTCGTTCAGACCGTTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 61010-60022 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOXR01000019.1 Vibrio cholerae strain MGL2619 NODE_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 61009 28 100.0 32 ............................ ATAATGTGGAATCACCTGCTTCAACCGCATCC 60949 28 100.0 32 ............................ TTGATACAGATTGCCGCCTGCGCGGAGGGTGA 60889 28 100.0 32 ............................ AGTTTATGGCGTGGGTAACGGTTCGTGACCAT 60829 28 100.0 32 ............................ ATTCCAAGCCCTTACAGCTTGAATTCTGGTCA 60769 28 100.0 32 ............................ TTACAAATATCGACGACTCGCTTCATGGCCAT 60709 28 100.0 32 ............................ TATACCACCGAGTGACGAATCTGATTATGACT 60649 28 100.0 32 ............................ TTCCATGCGAATGTGGTTTTGCTTGTAGCAAA 60589 28 100.0 32 ............................ TCAACATAGACCTGAGATCCTTTTTTCAAAAA 60529 28 100.0 32 ............................ GATGAGCAGCTTGCACAGTTAACAGCCACCGC 60469 28 100.0 32 ............................ ACGGTGAAATGGGTGGTTCATCCAAAGGGTTT 60409 28 96.4 32 ...........T................ GCTTAATGCTGATCATGGTTATTCAGGGGGGT 60349 28 96.4 32 ...........T................ GAGCTGATCGGCCTGCGTAACTTCGACGATGT 60289 28 96.4 32 ...........T................ TTCGTGCCGGGGAAATCAACGCCGTTGTATCT 60229 28 96.4 32 ...........T................ TGATAACTTTGTTGGGTGGTTTACTTTAGCTG 60169 28 96.4 32 ...........T................ GCGCCGCACCAAATGACAACGTGCCTGATAAC 60109 28 96.4 32 ...........T................ CAAATGTGCGTAATTTTTGTTTCGCTTTGTTG 60049 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================ ================== 17 28 98.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 363-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOXR01000003.1 Vibrio cholerae strain MGL2619 NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 362 35 100.0 36 ................................... CATTACCAGTTCCGCTCCACCCAAGCATACTTGAAA 291 35 100.0 36 ................................... CGTATGTTACTTTCGTAACGATCCAAACCATCTTTT 220 35 100.0 36 ................................... ATATTTACCATAGTTTCTTTAGGTACATATTTGTAG 149 35 100.0 39 ................................... AAAGCAACCACCTTCACAGAAATGTTCCAAGGGGCCACA 75 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================= ================== 5 35 100.0 37 GCTTCATTAGATAAGGTCGTTCAGACCGTTGAGAC # Left flank : GATTAGAGAAGTGAAAATTGCACTGAAACTAGGCAGTGAACCTAAATTTTGGAGGCCTTAAAGCATGAAAGTCTACTTGGCATGTTTTGATGTTGACGATGATAAGAAACGACGCAGATTGAGCAAGTTACTGCTCTCCTATGGCGAAAGGGTACAGTTCTCCGTTTTTGAAATTACGCTTAAAAACGAAGCAAGTTTGAAAAAGTTGCTTCAGCGTTGCAAACACCACATTGATGAGGGAGACAGTTTACGCTTTTATGCTTTACCATTGAACGCCCGAGAAGGCTCGTTTGATATCAATGGGGATCCCATAGCCCGGTTCCCACAGGCCGAAATTCTCTGAAGGTTTGCTCTTTAACAATTTGCCCTTTCATCCGCTGAAAAACTTGGCTAAGCTGAGGTGTCTAAATTTGGTGAAGCGTACCCTGACTTGTGGATAACTTTAGGTTGATCAAAAGTGCTCTTTATCTTATTGAATCCGAAACTCAATTTAAGGGTAG # Right flank : CATGCCGCAGCAAGATGATAGTAAAACTCGCTCATTGGCTT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCATTAGATAAGGTCGTTCAGACCGTTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //