Array 1 140298-140006 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQUP010000004.1 Corynebacterium diphtheriae bv. mitis strain 07-15 NODE_4_length_140297_cov_42.518296, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 140297 36 100.0 28 .................................... GCAGCAATGGAACTAGCGCAGACGATAC 140233 36 100.0 28 .................................... TTCGTCTTGTGCTTTCAGATGCGCTGGC 140169 36 100.0 28 .................................... TCATTACGCTAGTTGCGATCACGGTTGG 140105 36 100.0 28 .................................... GTCGGTGTCCTCGAAGGCAGCCATCGCG 140041 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 5 36 100.0 28 GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Left flank : | # Right flank : AGGTAGCCCAAAAAATCCTGTTTAACATGGTTTTTTGGGCTACCTGAAGTCTAAAAAATCGCGAGTTGATCAGGCTTTTCTTCGCCAGAAACCTCTGCAGAAGAAGAAAAACGGATCATCTTCGACCATTGGATGTCCGATACCGAAAGGATTCGAACATCCCCACCTGGGGGTAATTTTTCTTTAATTAATTTCACCAAATTAGATAACTTTGCGGCCAGAGGCAGGTACTGCACATATACACTCAGCTGTGCCATACAGAATCCAAGATCTAAAAGATTCTGACGAAACGCCGTTGCTTGCTTTCGCTGAGTCTTTGTCTTCACCGGAAGATCAAACATCACCACACACCACACCGGATCGCTACCTTTCTTCGGCATCGAAGGGACCTTCCCAAATAGGCGGTACTAATTTCTCAACATCACCTTCCACATACCGCCCATACTGTTGAGCGAACGCGGTAAAAACCGTCGGAATTGACTGCCCCGCAGAATTGAAAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 704-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQUP010000008.1 Corynebacterium diphtheriae bv. mitis strain 07-15 NODE_8_length_106804_cov_37.620274, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 703 36 100.0 28 .................................... GGCGGCGGCGTGGAAAATAGCTATTTAA 639 36 100.0 28 .................................... TATCCCGAAACTGTCAAACCTTTCAGTC 575 36 100.0 28 .................................... TCATCCATGTGCGGGTGCAGTCCGTGCC 511 36 100.0 28 .................................... TGTATTCCCCACCCTCGATAAGGGTGTT 447 36 100.0 28 .................................... GCTGTTGCCATCTCTCGTTGAGATTCGG 383 36 100.0 28 .................................... AGCGAGCAATCGCACAATTGAAAAGAGA 319 36 100.0 28 .................................... GCAGCAATGGAACTAGCGCAGACGATAC 255 36 100.0 28 .................................... TTCGTCTTGTGCTTTCAGATGCGCTGGC 191 36 100.0 28 .................................... TCATTACGCTAGTTGCGATCACGGTTGG 127 36 100.0 28 .................................... GCAGCAATGGAACTAGCGCAGACGATAC 63 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 11 36 100.0 28 GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Left flank : ACACCATTACTTCATCAAGTACTGCGTCAGTGACCGCGGAAATCGTCTCATGGGAGATGTCCACCCGCATAACAGTGGCCATATGGTGCCTGATATCGCGCACGGTCATCCCACTGGCATACAAGCTCACGATCATGTCATCGACATCCGTTAAACGCCTCGAGCCTTTCGGGACCATGGTGGGAATATACGTCCCAGCTCTATCCTTGGGGACGTCTACGGTAACTGGCCCGTCGTTGGGATCAACAGTCTTTAGGTAGGTGCCGTTGCGATAATTGTAGATCCCAGCAGCAGCTTTAGCTTCGCGATTTCAGCATGAGCAAGCAGCTTTTCCTCAGGTCGCGTCAATCTTGGCCTTATCAGCCGAGTCTCGTCTTACCACAGTAGTCATTCTGACTTATCTCCTTATGCGGAATAGAATCCCAAACACAAACCATCAGGCACCCTCATTCCCAAAAACCCTGATAAACTTCTCCTACGGTTCATCCCCGCTGGTGCGG # Right flank : CTTCGTCTTGTGCTTTCAGATGCGCTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //