Array 1 258454-257752 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXCG01000002.1 Salmonella enterica strain BCW_2512 NODE_2_length_364437_cov_3.47531, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 258453 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 258391 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 258330 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 258269 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 258208 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 258147 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 258086 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 258025 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 257964 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 257903 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 257842 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 257781 29 96.6 0 ............T................ | A [257754] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 276083-274713 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXCG01000002.1 Salmonella enterica strain BCW_2512 NODE_2_length_364437_cov_3.47531, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 276082 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 276021 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 275960 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 275899 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 275838 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 275777 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 275716 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 275655 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 275594 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 275533 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 275472 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 275411 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 275350 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 275289 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 275228 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 275167 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 275106 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 275045 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 274984 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 274923 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 274862 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 274801 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 274740 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //