Array 1 2106366-2108281 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071886.1 Akkermansia muciniphila strain KGMB01990 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2106366 31 100.0 34 ............................... ACCGTATTCACTTATGAGGGTATAGGCTACTGGC 2106431 31 100.0 34 ............................... AGCGGGTGTGAGGTAGTAGCGGTGGACGAAAAAC 2106496 31 100.0 34 ............................... GATTGAATGCAATGGCCTATTCTCTGCCCCGGAA 2106561 31 100.0 34 ............................... GCTTAACTTCTGCGACTCATCCACCAGAGACAGG 2106626 31 100.0 34 ............................... TATCAGTCCCATGCGGATAGGCACAAGACCCCTA 2106691 31 100.0 34 ............................... ATCTTTTGAGGAAATAAGCATAACGCCATAGGTT 2106756 31 100.0 35 ............................... ATATTGCAAGTACACGGGCGCATGCCATGAATACG 2106822 31 100.0 33 ............................... CAACTATCATCCCACCATGATGAAGAGATAGAA 2106886 31 100.0 34 ............................... TTCAACATCAGGGACATTGAAGGCCTTGCGGGCG 2106951 31 100.0 34 ............................... GCACCGGAATCGGTATATTTCGGACGGCCTGACC 2107016 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCAGCGGGTGTGAG 2107081 31 100.0 34 ............................... AAAGCCAAAAGAAGCCAAAAGAAGCCAAAAGAAG 2107146 31 100.0 34 ............................... TCCCTACCCTTTTAGTAGGGATTCCTTGTTCCTA 2107211 31 100.0 34 ............................... CTACTAAACCTATCGGAATTGTGATTGAAGGCAT 2107276 31 100.0 34 ............................... CGTTTCCCTGGTGGGGTAGATAACGGTGGAATAT 2107341 31 100.0 34 ............................... CGCTCACTTGTATCTAAAAGGGTACAGTATAGCA 2107406 31 100.0 34 ............................... AATTTGTATGACACAATCGTAAGTTATTCAGCAT 2107471 31 100.0 34 ............................... TGTTTCCCCGGTGGGGTAAATAACGGAGGCATAT 2107536 31 100.0 34 ............................... CCGCCGTAGGACAATCTCCCATGTGCTATGCGCC 2107601 31 100.0 34 ............................... TATAGCCAATTGTGAGAGTTTCCGGTTTGTAACA 2107666 31 100.0 34 ............................... TGCAGCCAGGACTAGGGATAAGATTCCCGCGCCG 2107731 31 100.0 34 ............................... AGCATCTAAAATATGTGCGTAAGCTTCGACACGG 2107796 31 100.0 34 ............................... ACATTATATCATAAAAATAAGAGAGTTATGAACA 2107861 31 100.0 34 ............................... GGTCCCTACAAATTACCAAGTCCCCCTTCTTAAA 2107926 31 100.0 34 ............................... TTATCGTCCAACGAAATAATGACGTCCTTCCACG 2107991 31 100.0 34 ............................... TACTTGGAGCGGAAACTTTCTACGGCATGGTCGA 2108056 31 100.0 34 ............................... CGGAATGCTCGACGGCAATCTTCAACGCGTTATT 2108121 31 100.0 34 ............................... TATTTGTTTGGTTTGTGATTGTGCGGGGGAACAA 2108186 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 2108251 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== =================================== ================== 30 31 99.7 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAAGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2607210-2606773 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071886.1 Akkermansia muciniphila strain KGMB01990 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 2607209 32 84.8 34 A.T.....TA-...................... TAATCCAGAAGTTAATGATATCACGGGGACGGGG G,G [2607202,2607205] 2607141 33 100.0 34 ................................. CATGACATAGAACGCACGTACCTTCCGTCTAATC 2607074 33 100.0 34 ................................. CCCGGTGGGTAATATGGACCATACCGCTGTGACA 2607007 33 100.0 33 ................................. TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT 2606941 33 100.0 34 ................................. CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC 2606874 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [2606851] 2606805 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= ================================== ================== 7 33 97.4 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : ATGGGGAGTGGATGATTTACGGCTGTTTGTACGCCTTGCGCGGCCGGGTCGCCAGGCGATTGCTCCGGGATATGGATTGGGAGAACATGGATGCCCTGGCTCCGGAGGACTGGACTATCGGACGGGCGGCATTGACCAGTTTGCCCGCCGCGCTGGCACGTATTGATGAACCATGGAGCCAGCGCACGCCGTGGAGTTCATGGACGGCCTGGTGCTGGTACAGCCTGACGGCCTCTCCGGAGCGCTACGCCTCCCGGTTTGCTGTCGTTACGACCGGCAATCCTCGACTGGATACCCAGCCGGCCAGCGATCGGGCCAGAGTGATGCACCTGCTGGCCGATGCCAGGGAGCGGATGATCCCGGAGGATGTCTCCAAAGAGGACGACGAGGCGGTGGACTGGGGAGACCTGCTGGCCGCCTGCAAGGGAGATGCAAAGGCGTTGCAATGAGGGGTGTTTAAGGTCGTTTTTCCACAATGCTTGATAAATTTTCTACAAAGC # Right flank : CTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,10.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2638918-2638150 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071886.1 Akkermansia muciniphila strain KGMB01990 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2638917 33 100.0 34 ................................. CTTGCCGTTTGCCCCTGATGACTATTTCCGGGGG 2638850 33 100.0 34 ................................. AATGTCCCTGATGCTGAATAACTTACGATTGTGT 2638783 33 100.0 33 ................................. GATTCATGGCAACGGGGGTAAGTGGCTTTTCGC 2638717 33 100.0 33 ................................. TGCCAGTAATAGCAAGTGTAAGGGCCGTTTCTT 2638651 33 100.0 34 ................................. GCACCGGAATCGGTATATTTCGGACGGCCTGACC 2638584 33 100.0 35 ................................. CCGCCTCGTAGGTCTCGCATTCCGCCGGGGTTAAG 2638516 33 100.0 34 ................................. AATATCCCTGATGCTGAATAACAAAACCACTAAA 2638449 33 100.0 34 ................................. ATAATTGTTTCCTTTCTTTAGTGGTTTTAGTTTA 2638382 33 100.0 34 ................................. CGGACGGCCTGACCCCTCCACCAGCAACGGAATC 2638315 33 100.0 34 ................................. TCTTAGCGAAAAGCCGGATTCCTTTCCAGGTCAT 2638248 33 100.0 33 ................................. TTGGTAGTCACAACATGAAAGCCGTTATGCCTT 2638182 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 12 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : AATTTGATTTGATTATTCATTGTTTTATTTCTTGTCGCACTCCGCAAGGATGATCTTTATCAATGAAGGGTGGAAAGGGGTGAATTTAGGGTGAATAGGGGTGAACGCTAGGAAAATCAAGGGGAGCAAGCGTTGAGTGATCAGAGAAAGACTGTGTAGAAAATATCGGTGTCAGAAGAGGAAATTATCAAGCAGTGTGGAAAATAATCATGGTAAGATGTCCCGCATGTGTACACCTGCATATTGCATCCCCTTGTATGGCTCCATGACTGTTATCTCGCCCGGAGACCGAAGGAAAAAGAATCCGCAAATTTATCATCTCCATGATACCGCTGTCGTGTTGATGTGGACAACCCGTGAAAGAAGAAAGACGACATGCTGGGTGCGGGATGTGCTCGACAACGTGTGGATTGTGATCAGGAACGAAAGAGAAGATGATTGAAAAAAGGCCGCCAGGAAAAACCTGACGGCCTGAATTGTATTTGCCCATTGTTACAGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //