Array 1 13-1260 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDLS01000191.1 Salmonella enterica subsp. enterica serovar Anatum strain 233 NODE_191_length_2763_cov_1.06601, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 74 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 135 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 196 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 257 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 318 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 379 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 440 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 501 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 562 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 623 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 684 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 745 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 806 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 867 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 928 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 989 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 1050 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 1111 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 1172 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 1233 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TATCCGTTTAGTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8907-9424 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDLS01000035.1 Salmonella enterica subsp. enterica serovar Anatum strain 233 NODE_35_length_39071_cov_1.52979, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8907 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 8968 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 9029 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 9090 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 9151 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 9212 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 9273 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 9334 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 9395 29 93.1 0 ............TC............... | A [9422] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //