Array 1 43219-43368 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHOB01000011.1 Levilactobacillus angrenensis strain M1530-1 contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 43219 28 100.0 33 ............................ TGTCAAGTCGCTTGCCGGACTGAAGACGTCAGA 43280 28 96.4 33 ...........G................ TCAGCGGTAGCCATGCTTGCTGCCCATCTTTGG 43341 28 89.3 0 ........................G.TT | ========== ====== ====== ====== ============================ ================================= ================== 3 28 95.2 34 GTGTTCCCCACAGGTGTGGGGGTGATCC # Left flank : TTTAGGCGAGGCTCGTTTCCGGATGCGTCACGAATTTCACGTGCCGACCCAACCAACGCTGGCGATTGCTGACCAGTACTCACGGCTGGGCGACTACCGCTTGGCGGACGGCGATATCGCTAATCAGCTCCGCAAGAGTCATATCCCACTGTTGCTGATTCAGGGCGCTAACGATGAGACGGTGCCGATCGAGAATCTGGACCTCTTGTACCAAGCCGCTGCGGGTCCCAAGCAGAAATACCGTGACCCGGTAGCAGCGCACATCGCCACGCGCGAGGAGAATCCGGAGTGTTATGACCGGCTGGTGGCTGATTTCTTGGCACCGTATGTGCGGGGGTAAAGTAGACTCTGACTGGGTTTTAAAATGTCTTTTTAATGTTTACCGATTATGATTTTCCGAGGGATATCGAAGAAGCAAGTTAAAGGCAAGTTAAAGGCAAGTTAAAGGAAAAACGCCTTTTTTGAAAAATAGAATCCCGGTGTAGCGGCGTTTCTTTAGT # Right flank : TTAAAGTCCAATAATTTTATCTTGAGCGTCACCGAATCAGATTACTAATGCCCTTTCATGAAATTATTTACAGTATTTAGTTGACTATTATCGCTAAATACTGTATAGTAACCATTAATCCGTCGCATTGCTTAGCTGACGTGTCCAGAGAGGCCGCACTAAGCACGGAACCCAACGATGGATCTTGAGAGTCTAATTTAAACGCAACGCACTTACCCTTTAATTGCTTCCAGCGAGGAGCAAAACGGTCTTGCTTAACCTAAAATTCGACCGATATGGCGCTGGAGCAATCCAGCGCCTTTTTTGTGCGCCGAGACATTACATTTCACGGGAGGAAATCATGTCACAACTTAACATCGATTTACCAGGATTATCGCTCAAGAACCCCATCATACCGGCAAGTGGGACTGCGGCTTATGGACAGGAGCTCGCGCAACATTTTGATTTGAACGCACTGGGAGCATTGGTCATCAAGTCCACGACGTTAGCACCACGTAAAG # Questionable array : NO Score: 3.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACAGGTGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 27957-26769 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHOB01000004.1 Levilactobacillus angrenensis strain M1530-1 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27956 29 100.0 32 ............................. GTCGCATTCGTGAAAAGTATGCCTCACGTAGC 27895 29 96.6 32 ............................C GCGATTTAAGGTGCTTGCCTTGACCGACAGTC 27834 29 100.0 32 ............................. TCACAAGTCACATTCACATCGTCCCATCCCTG 27773 29 96.6 32 ............................C CAGGAGTTTGTCTGCGAGCAAGTCTACTACCT 27712 29 100.0 32 ............................. ATTTATAGGTGTTATATGAATTTTCTATGCTT 27651 29 100.0 32 ............................. ATCACAAAATATGGGGGTTCAAGAAATGACAC 27590 29 96.6 32 ............................A ATCTAAGTACTGGGGGCAGCGGGCCTACATCA 27529 29 96.6 32 ............................C CATTTTCGTCTGGGTTGATAGTCTCAATTTTG 27468 29 100.0 32 ............................. TTTCTCAATCAAGTCTGGTTCGGCCATCGCAA 27407 29 96.6 32 ............................C GTGATGCACGACGTTTGTGACGGGTATGCCCC 27346 29 100.0 32 ............................. TGGAAGGGTTGCCTGTGGGTGGCCTTTTTTAT 27285 29 96.6 32 ............................C CAATCACCGTGCACCGGCCGGATAGTCTTACC 27224 29 96.6 32 ............................C CAAGTCGTTCTCGACCACTTCTTCTAGCTGTT 27163 29 100.0 32 ............................. ATCGAAGCCAGTGAATGGCTCAACAAGTTCAA 27102 29 96.6 32 ............................C AATATCAAGTTTGCTGTCAGGGTAAACTGTGG 27041 29 96.6 32 ............................G CTGTTTAGCACAATCTCAGTTGGTAACGCCCA 26980 29 100.0 32 ............................. ATCGTCCCAAATAAGTCCGTGGAATTTATAGA 26919 29 100.0 32 ............................. ATGGCGGCCGGACCAAGGCCGATGCTGAACAA 26858 29 96.6 32 ............................C ATCTTGTCGTAGTCCAGTGTCTCAATCATTGT 26797 29 89.7 0 .............A...A..........C | ========== ====== ====== ====== ============================= ================================ ================== 20 29 97.8 32 GTATTCCCCACAGGTGTGGGGGTGATCCT # Left flank : TTCAAGAAACCCCAAAGATTAAACGTCTACTTGCGGCAAATTGTTAATGATTTGCTGAATGAGGGCGTGCTGGATGATCAAACGCCACGCTACTCCAGTATCCCTGGTCGGCGGGTCGGTAATTTCAAATTCGTCATGTTGAACCAGCAGTTCCAAGACCTCGGTGCCCAAGAGGACTTGCCACTGCTAGACCGTTTGTTGATTGGCGGCCGACTGCTCTTACAACGTATCTCGCTGTCACCACAACGCTGGTACGGCTTAGCCTTCAGTGATGTGGTCGAGGAACGGGTCCCATTGTTCATTGGGCAGCATCCGGACCGGACTTTACGGCGGCGGAAGGAATAGATTGATTTATTGAAGATCTCCTGAAATCCGGAGACCTTTTTTTGATTTAGAAAGTAGATTGTCAAAGCTGGTCGGATAGTGTATGCTAAAACCAAGTTAAATGAAAACGGGACTTTTGAATTTTCATAATCCCGGTGTGACGGCGTTTGTTTAGT # Right flank : CAAGCCGTCGCTGTATGTCTCCAAAGAGTAGATGTATAGGAAAAGGCCCACCAGCCAACCAAGGCCAGGTGGGTCTTTTCCTATGTCTCTAATATCTCTAAGCTAACTCCCAATTATCCCCACAAAAATGCTTCCATATCCCGCACCACTTCAGGATTTCGCCGTGGCAAAGCCCCGTGGGCGGCGTCTTCGCCGGTGAGTTCGACTTCCTTGAAGGACTTGGCGCGGTTGCGGACCAGGTAGCGCAGCGAGCGGGCAGAGGCGACTGAGATGGTGCCGTCTGTGTTGGCGCCGTTGCCTAGGGTCCCGTAGATACTGAGAATCTGAAGTTGGTTATCCGGAATATTTTGCCGGTTGTCAACGAGTTGCTGGAAGGTCGGTGAGAAGTGACTCGGGCGGCCATTGGCGGCATTAGTCGTGTGGACCGACCAGGGATTCATGACGATATTGCCCAGCATTGGCGGCGCGATGGCCACGTACTTTTGCAGCTGAGGCAGGCG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7987-8382 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHOB01000013.1 Levilactobacillus angrenensis strain M1530-1 contig13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7987 29 96.6 32 ............................T CCACGTTGGCGGTCTTGAATTGCTGCGTGTAA 8048 29 93.1 32 A...........................T ACGTCACCATATTCTATTACCGGAAGTGCTGA 8109 29 100.0 32 ............................. TCGATCTACAATGATATCGGTTTTGAGCATCT 8170 29 96.6 32 ............................T ATCACATCAGAGAAAATCAATGGTCAGCGAGT 8231 29 100.0 32 ............................. CGCGTACTGCGGATTAAGGAGAGATAGATATG 8292 29 100.0 32 ............................. TATCTAGTTTGTTTGCCGGAGTTAGCAGAACA 8353 29 69.0 0 ..G..........C.A....A..T.AAGA | C [8373] ========== ====== ====== ====== ============================= ================================ ================== 7 29 93.6 32 GTATTCCCCACAGGTGTGGGGGTGATCCC # Left flank : TTAGATGGCCAAATTGCCCGGCGCAATCATCTGGTCACCAATTTCGGTAAATTCGCTGACCCGCTGGCGGATAAAATGATTGTCATGACGGCGTTCATCATTCTGGTGTCAATGGGGGCTGTGCCAGCTTGGGCGGTCGCCATCATCGTGTGCCGGGAGCTGGCCGTGACCGGCTTACGGTTGATTGTCGTGGAAACTGGGGGCAAGGTCTTAGCCGCTGCCTGGCCAGGGAAAATCAAGACAACGACCCAAATGGTGGGAATCATCTTGCTATTATTGAATAACATTGGCTTTGGTGCCATCAACGTGCCAATGGCATTGATTTTCTTCTACATCTGCCTGTTCTTCACGATCTACTCCGGAATCGACTACTTCGTCCAAAATCGCCAAGTGTTTGCGGAATCTTCAGCGGAGTAACTGCGGTAAGCTGGCGAAGGCAAGTTAAAGGAAATTCGGGATTGCGTGAAATTGAAATGCCGGTTTGACGGGATTTGTTTAGT # Right flank : AGGTAGCAGTCAAATCCGACGGCTATCTTTTTTTGTGAAATCAACCGATTCGCGAGGTAAGATTAGCCGTGCTGACGAAATTTGTGGTACGATTTCAGTACAAGTGTTTTTCACTGACGACAGGTTTTTGAAAAATAAATCGAGAAAAATAAAAAAATCCGCGAGTTTTTACGGAGTTAACTTTAAGTCACCTCAGGAGGGGTCAGCATGCAAGCGGAAATTATTGCGGTCGGAACGGAAATTTTATTGGGGCAAATCGTGGATACCAATTCGGCGTTTATTGCCCAAGAGCTCGCCCAAGCGGGAATTGAAGTGTACTACCATTCATTGGTGGGCGACAATGCTGACCGCCTGACTGCGGTGGTGAACCAAGCCCGTTCGCGCAGTGATCTGGTGATTATCAGTGGCGGTTTGGGACCGACCAAGGATGACCTGACCAAGCAGACGGTCGCACATTTGCTGGGGGTCAAGCTGGTAGAAGATGAGCCGGCCATGGCGAA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12710-10995 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHOB01000005.1 Levilactobacillus angrenensis strain M1530-1 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12709 29 100.0 32 ............................. ACTTGTCCTTGTATTGAGAACCATACTGCACT 12648 29 100.0 32 ............................. GGAGTGCCCTTTTACTTGGTAAGCTTTGAACG 12587 29 100.0 32 ............................. CGGGGAGCCGTCAGCGGTGGCTTCAGCAGTCA 12526 29 100.0 32 ............................. GTCATAACGGAATCGCAGATTATATTATCAAC 12465 29 100.0 32 ............................. TTACGGGGATGCCGTGCATCACTACCAGCGGC 12404 29 96.6 32 ............................C GGTGTGAAGGTATTATCATGATGTGGCATAGA 12343 29 100.0 32 ............................. ACTGCATGCTCCATCACTTAATCTCCTCGATT 12282 29 96.6 32 ............................C GGCCCCAGTCTTTCGACGATGAGTTTCGCATC 12221 29 100.0 32 ............................. ACCTCTTGTGAATACCTCCTGACCGGACGGGA 12160 29 96.6 32 ............................C CTTCCAGTCAACGTCTTGGAAGTCTGGTTCTG 12099 29 100.0 32 ............................. TTTGCGGTTCCACTTCGCCGGAGCGTAGGTCA 12038 29 100.0 32 ............................. AATTTTCGGCATATTCATTCTCCTTAGTTTGA 11977 29 100.0 32 ............................. CTGACACCTATCTGACACCCTCAGATAGGAAC 11916 29 100.0 32 ............................. CACATACGATTGATGCCCTTACTCAGCAGGTA 11855 29 96.6 32 ............................C CCGAACCACGTTGCGCCGCCCGAGATGAAACT 11794 29 96.6 32 ............................C AGCCTTCATAGAGGTATTCAAATTAAAAAAGG 11733 29 100.0 32 ............................. CATACCGCACCCACGGGACGTTGTCACGTCTT 11672 29 96.6 32 ............................C TTGTCAGCTTAGAGGTTATGTTGTTTTGAGCA 11611 29 96.6 32 ............................C GATCGCTCTAGCGTCGTTATTACCTTGCCTCT 11550 29 96.6 32 ............................C ATGGCTGGTGGTACGGCACACTCTACCAACCA 11489 29 75.9 3 .............ACA..TA.......GA TAC AAC,TAGCT [11461,11473] Deletion [11458] 11449 29 100.0 32 ............................. CTGCTGTTCACGCTGCTTGATAAGTTGTAGCC 11388 29 100.0 32 ............................. GAATAATTTAAAGACGTTGCTTAAAACATTTT 11327 29 100.0 32 ............................. AAGGAGACGCGACCCGTGGTTCGAGTTCGTGC 11266 29 96.6 32 ............................C AGTTATTATATTATATGTTATGCAAATGAATG 11205 29 100.0 32 ............................. GGGGGACCGAATTAATCAGGAGGAAATTTAAA 11144 29 96.6 32 ............................C GACTAGCCTGCAAGTAGCAGAAACATTTGGCA 11083 29 100.0 32 ............................. AGAGATTCGTAATGCGATTGGAGAAGATGTAA 11022 28 82.8 0 ...................A.-....TTC | ========== ====== ====== ====== ============================= ================================ ================== 29 29 97.4 31 GTATTCCCCACAGGTGTGGGGGTGATCCT # Left flank : TATCTTGCCATACGAGGACTGCTGTACCATCTTCACGCCACCAGCACCCAAGACGCATCCGAGCCTGGAAAAGTCCCGGAAGTACGAAGGGTACATCGACGTGGATGGCTTGATGAAAGAGGCCTTGGACGGCATCACCATCACGGAAATCCGGCCAGGGGACAACTACCTCAACCAAAATGAAGATGTATTCGCTGAATTGTTGTAAAGAATAAGAGTGGACCCAAAGGCAGCCGGCGAGCGATGACGCTACCAACCGAACAATCCTGATTTAGGATTGTTTGGTTAGTAGGTTTAAGTGGCGCCAGCTGTCTTGGGGACCACGTTTCAGCCATTTAAAGTTGCTGAACAGGGGGGCTTGAGAATTTTTTCTCAGGCCTTTTTCTTGTAGAATTTTAGTTGAGAATTTAGCGGAGTTAGGCTATGCTGGTAAAAACGAAGTTAAATGAATTTCGGGTTTTGGCAAAAATGAAATGCCGGTCTGACGGGATTTGTTTAGT # Right flank : ACCACCAGCAATTTGGTGGTGTTTTTATTTTGTCGTTGAAATTATTTTGCTGGTGGTGCAGTGGCAACTCAACCTCATAAAGTTGATACGATGAGGCATCACAACTAAATGACTGTGGCAAGCGGATTAGGGCTTCATACAGTCATTATCAATGAGACGGAGGTGAAGTAGCATGAAGTATAAGTATAGCCAGGATACAGATGGGTGTGGGTGTTGTGGGGTGCTTGTGACGGTAACTATAGCTTATGTCATGATTAAGTTGTTGATTGGGGTCATTACATACTAGTAAGCGGATTAACGGTATTTCCCACAAGCGTAGGGGTGAATCACCAGAGTTTTTCGCAATTTTATGGCAAAATGCTTGTCATTACCCCTGGAGTTGCGCGATAATTAAAGCAATTAGTCGGTGAAAGCCGATAAATAACTGAAGGGGTTGATCTGCGTGGAAGTCACACGACTCGGCGATACATTCTCTTTATCTGGTACGTTGCCAGAAGTAG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //