Array 1 95918-94791 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFKN01000053.1 Escherichia coli strain HH-P011 sequence053, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95917 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 95856 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 95795 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 95734 29 100.0 32 ............................. TTACAGCGCGTTGCGAAACGCTGCGGCGATGT 95673 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 95612 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 95551 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 95490 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 95429 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 95368 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 95307 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 95246 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 95185 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 95124 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 95063 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 95002 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 94941 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 94880 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 94819 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 122683-121617 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFKN01000053.1 Escherichia coli strain HH-P011 sequence053, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 122682 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 122621 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 122560 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 122499 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 122438 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 122377 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 122316 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 122255 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 122194 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 122133 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 122072 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 122011 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 121950 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 121889 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 121828 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 121767 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 121706 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 121645 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //