Array 1 53240-52311 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QZHV01000001.1 Moraxella catarrhalis strain COPD_M22 NODE_1_length_267959_cov_39.1845, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	============================	==================================	==================
     53239	    28	 100.0	    32	............................	ATGGGCGGAGACGGTGGTGGTCTTGATGATTT  	
     53179	    28	 100.0	    32	............................	AACCCCAATTTGGGGGCAAGTGTGGACATGGA  	
     53119	    28	 100.0	    32	............................	CATCGAATCGCAAAAACTCACTGTTGATCAAG  	
     53059	    28	 100.0	    32	............................	ATATCGCTAAAATCTGTGCCAAGCGTATCATA  	
     52999	    28	 100.0	    32	............................	GATAAGCTGTACGGGCTAAGCGATACCACTGT  	
     52939	    28	 100.0	    34	............................	CGCCAAAAAGCCACGCATTCGCCAGTTCCTTGCC	
     52877	    28	 100.0	    32	............................	ACTGTCAATATAAGCCTGCGGAAATTCATAAA  	
     52817	    28	 100.0	    32	............................	GCCGATGGCTTCTTGGAGCATGGCAGCCGCCC  	
     52757	    28	 100.0	    32	............................	ATCGGATTATGTTGTTCCAGTTTCAAAATATC  	
     52697	    28	 100.0	    32	............................	AAAATTATTACAAGATTTTTGGAAGTTAGCTT  	
     52637	    28	 100.0	    32	............................	AAGAATAATCAGTTTTAGCTAAGTCAAACAGA  	
     52577	    28	 100.0	    32	............................	AATGGGCGGTCAGCTCAGGCGTAAACACAGCA  	
     52517	    28	 100.0	    31	............................	ACCGAGCGTAACCGCATTACCGCGCCATCTT   	
     52458	    28	 100.0	    32	............................	TGAGTTGTACGCATAAAATGCCGTTTTGCTGT  	
     52398	    28	 100.0	    32	............................	ATAGCCCGCTAAAGTCGTTGGCTTATTGGTAA  	
     52338	    28	 100.0	     0	............................	|                                 	
==========	======	======	======	============================	==================================	==================
        16	    28	 100.0	    32	CTTCACGACCGCACAGGTCGCTTAGAAA	                                  	       

# Left flank :   TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTCAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT
# Right flank :  TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACAT

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTTCACGACCGCACAGGTCGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [5,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.10,-7.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.51   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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