Array 1 2061239-2061575 **** Predicted by CRISPRDetect 2.4 *** >NC_013520.1 Veillonella parvula DSM 2008, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 2061239 35 77.1 41 AAAA...G.....AAT................... TAGAATTAGATGAAGTATCTGTAGCTGATAGCACTAGACTG 2061315 35 100.0 43 ................................... ATTGTAAAGATCAAGAAGGAACTTATTCCATATATTTCAGCAA 2061393 35 100.0 35 ................................... TAACTTATAATACTCCTAGATTGAATGCTATTAAA 2061463 35 100.0 43 ................................... AAACCAAGTATTGCAACTCTTATTAAAAAAGATGAGTAAATAA 2061541 35 97.1 0 ................A.................. | ========== ====== ====== ====== =================================== =========================================== ================== 5 35 94.8 41 GTTTCCGTCCCCATCAGGGGATTATTTAATTTAAC # Left flank : TGAAGCGGTAACTCTTTATCAAACTTCTGTGTAGAGGTATTTTCACCTTCCTCAAGATCTCGACGATTTACAGCTGCAGCAATATTATCTGCTTCGTACACAATGTATGCATAATCATCATTTTTTAGTTGAGCTGTACTAAGCTCTTTCCCGTGATGATACTTCAAACAATGAGTAATACTTTGCTTTAAGCCCATATCGGAAAAATAGGGTTCAATGAAAGCAGCGCCGCGCTTAGAATGTGCATCGGTTCCCTGATTAGCTCGATACACGACTTTGCCGATATCATGAAGCAATGCACCCTTTACCAGTGCATCCCATTTACCCATTACATCGCCTCCAAACTCTACTTAAGAAATAAAAAACCTATTGACTTCATTATATATTCATTTCTGTTTAAAACCAATAGAAAAACCATCCGATTTATACAAAAAAGCCAGTATATTCACTAAAAAGAATATACTGGCTATATTTTTATACTTATATGAGTTTTTAACATA # Right flank : CCCTGTCTCTGAAACAACAGATATTTACTGGTTCCAAAATGCAAAAAACGGCGGAGATTGCAAATTGATTTTAAAAGGCACTTTAGCAAGCTAAAATAATGTCTTTTAACCGCACCACTATCATAACGGCGCAGATTTGGTTTTCCGAGTTTTAAATCTAGCTATATTATACCATAAACAAAAGAAATAGAACCATTGGCATTAGTGAGATAACTCTATCAATATATCAAACTAAAAATAATGGTTCTATTAATATACTATAAACGTTAATTGTTGTTGCAACCTAATCACTGATACTTGTGGTATGCTTGAAGCTTACTCGTTTCAATACCGTAAACGGTAAGTGCTGTTGCAACAGGTGCAGATAGAAAATATCGTCGCCCTTGGAAGTATTATGTTTCAATACCGTAAACGGTAAGTGCTGTTGCAACTCTTCAATTTCAATACTGGAATTGATTTCTACTTCACGTTTCAATACCGTAAACGGTAAGTGCTGTTGC # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCATCAGGGGATTATTTAATTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 2062451-2061822 **** Predicted by CRISPRDetect 2.4 *** >NC_013520.1 Veillonella parvula DSM 2008, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 2062450 35 100.0 40 ................................... TAATTACTAATAGATTGTACAGAACGATTACTTTGAATAA 2062375 35 100.0 39 ................................... ATTCTTTCATAACAGATTGTACACTTTCACTGCTCTTCA 2062301 35 100.0 41 ................................... ATTCTTTTTTTGTCTGTTCATATTATTCTCCTCTCTTGACA 2062225 35 100.0 39 ................................... ATTGCATCGTTACGAACTTGATCCATTGCAATATTGTCG 2062151 35 100.0 39 ................................... TTTACCGCTGTCTTAGTGGTATCTTGTAAAGATTTTACA 2062077 35 100.0 37 ................................... GTGAAGTAGAAATCAATTCCAGTATTGAAATTGAAGA 2062005 35 100.0 40 ................................... ATAATACTTCCAAGGGCGACGATATTTTCTATCTGCACCT 2061930 35 100.0 38 ................................... GAGTAAGCTTCAAGCATACCACAAGTATCAGTGATTAG 2061857 35 77.1 0 .........A..A...A......TA.....T..TA | A [2061826] ========== ====== ====== ====== =================================== ========================================= ================== 9 35 97.5 39 GTTGCAACAGCACTTACCGTTTACGGTATTGAAAC # Left flank : GACTTATGACACCATAGAAGAATATAAAAAAGTATTAGATAAGTATCTATTTTATATGTATAAGTAGTGACTATATAGAAAAATTTATATACCTATTTTATAAAGACTTCCATACAAAATTTTATTTATAGATTGAGGTTATGAGCATAAAACATAACTATATAGTTATGATCTTTATGCCTTAAAGAATAAAAAGAACTCGCCTAATAAAACGTTAGGAGGGTTCTTTTATTTAAACTATATATTGAAAAAAATAACTATCAAAATTTTATTAATAGTATTTCCTTAGAATATATTGAAAAGAAAATGAATTAAATATTGACGCAAAATCTGAAAAATCTTATAATTACTGTAACCTTAGAAAAATCATTTACCACCAGTATTTACCTATGCTCATCGGCATTTTTAATCCCATGGGAGCTCAATCTGACCGTTTACGGTGTGAGGTTTGCCAAAACCTATTTTTAAGCCCCATGAATACTGGACTACTGAGGCCTGCT # Right flank : GAACCATTATTTTTAGTTTGATATATTGATAGAGTTATCTCACTAATGCCAATGGTTCTATTTCTTTTGTTTATGGTATAATATAGCTAGATTTAAAACTCGGAAAACCAAATCTGCGCCGTTATGATAGTGGTGCGGTTAAAAGACATTATTTTAGCTTGCTAAAGTGCCTTTTAAAATCAATTTGCAATCTCCGCCGTTTTTTGCATTTTGGAACCAGTAAATATCTGTTGTTTCAGAGACAGGGTTAAATTAAATAATCCCTTGATGGGGACGGAAACTTATTTACTCATCTTTTTTAATAAGAGTTGCAATACTTGGTTTGTTAAATTAAATAATCCCCTGATGGGGACGGAAACTTTAATAGCATTCAATCTAGGAGTATTATAAGTTAGTTAAATTAAATAATCCCCTGATGGGGACGGAAACTTGCTGAAATATATGGAATAAGTTCCTTCTTGATCTTTACAATGTTAAATTAAATAATCCCCTGATGGGGA # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAGCACTTACCGTTTACGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 3 2079800-2078944 **** Predicted by CRISPRDetect 2.4 *** >NC_013520.1 Veillonella parvula DSM 2008, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================================================================================================================================== ================== 2079799 35 100.0 35 ................................... CTAGTTCTGCTTTCTTATTTTCAGCATCATGTAGA 2079729 35 100.0 43 ................................... TAGAAGGGGTTGAATATTCTACTATTGCCATGTCTGCAGCTTC 2079651 35 100.0 35 ................................... ATTATTGCTGTACTTCAAAATGACAATTACTTTGG 2079581 35 100.0 36 ................................... GCTAGAAATAATTCGAATCCGATTACAAATCCTAAA 2079510 35 100.0 41 ................................... TATTGGGAGTTTTGAATTTCTTTATGCATTTGCATAAAGAG 2079434 35 80.0 87 ........A..A.................GCGC.G AAGGGTGCGAGACAGCAGAGGAGCAAAGCGACGATGAGGTCCGCACATCTCAAGTACCTGAACGAAGTGAAGGTAAAACAAGGGTGA 2079312 35 74.3 37 TAA.GG.TTCA........................ ATTTATAACTATCGGCAATTTTAATTTTAGATGATTC 2079240 35 94.3 37 ........A..A....................... CCAAAGAACTTAATGAGTTTCAAAACATTAGCTCTAC 2079168 35 82.9 155 ........A..A..........G........C.GA AGGGTGCGAGACAGCAGAGGAGCAAAGCGACGATGAGGTCCACACATCTCAAGTGCCTGAACGAAGTGAAGGTAAAACGAGGGTGATAAGGGATTCAGCTTACCGTTTACGGTATTGAAACCCGGTCCATGTTCCGTGTGTGGTGAATTTCCAAG G [2079137] 2078977 34 82.9 0 ........A..G.................-.CGT. | ========== ====== ====== ====== =================================== =========================================================================================================================================================== ================== 10 35 91.4 56 GTTGCAACCGCTCTTACCGTTTACGGTATTGAAAC # Left flank : GTTGATGAAGCAGTAGATTTTGTACTAGACGAATTATTTGATTGAGTATAGGAGAGGTGTACATGTCAACTCTAATAGGATTATTATTGTTGTATATATTCGCTTGGTATCTTGAGGATTAATAGTAGAAATAATGATGGAATATAATTGTATATAGGCCTATTCATATGATGATGTATGGATAGGTCTTTTTATATGTAGTAGATAGACTAAATCCTTTTTTAGGTATTCAAATTAAGTTAAAAATTGTTAAACTTAGATACTATCTACATTTAATTAAAAATAAGCCATAAGTCAGAAAGAAAACGATAAAGAATATTGACGTAAAATCGAGAAACCCTTATAATTACTGTAACCTTAGAAAAATCATTTACCACCAGTATTTACTTATGCTTATCGGTATTTTTGATCCAGTGGGAGCCCAATCTGACCGTTTACGGTGTGAGGTTTGCCAAAACTTAATTTTAAGCCCCATGAATACTGGCTTTCTGAGGTATGCT # Right flank : GAAGAATGGGAATATCTAACTTAAAAATTACATAATAATAAAGAACTGTGTTCTTGTGTATGTCACACAAAAATACAGTTCTTTTTTTGTTCCTAGTTTTTCTGATTAGTTCACTTTCAGTATGATTCGTATAATGAACTCAACAAGTTTAATTGGTCTTATATAGGAGGTAGTATATGGCAATGTTGTTTTTAACTTTATTGGTGTGGTTTGTATTACCATCACGGAATGATTATTAAGGAGGGTATTATGGAAAATTTACAGGAAGAATTAAAGTCTATGTTGTCCTTATCAGGGCGTATGAATCGTCGCTCTTATTTTATGAATTTGTTGATGATTATTGGTATTGGCTATCTTGGGGGTCTTTGTATTAGTCTTGCCCCTGTATCAAAGTTTTTCTGGGTATTGGGTTGGTCAATCATAGGGTATTCTGTTATTCGAGAGTTAGCTATTGCATCGCGTCGTATTCATGATTTAAATGGACCAACTTATTTAGCAGG # Questionable array : NO Score: 8.32 # Score Detail : 1:0, 2:3, 3:3, 4:0.62, 5:0, 6:0.25, 7:-0.55, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACCGCTCTTACCGTTTACGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 4 2092553-2091496 **** Predicted by CRISPRDetect 2.4 *** >NC_013520.1 Veillonella parvula DSM 2008, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 2092552 35 100.0 36 ................................... ATTATATGAATATTATTACTAAATCAGAACATCAAA 2092481 35 100.0 38 ................................... TCTATAAATTAGTCACGACTATAATTATTAAAGTCGTG 2092408 35 100.0 36 ................................... ATTATATGAATATTATTACTAAATCAGAACATCAAA 2092337 35 100.0 38 ................................... TCTATAAATTAGTCACGACTATAATTATTAAAGTCGTG 2092264 35 100.0 38 ................................... ACCCATTCGCCTAGTGCTTTATGATAGTGACTTACAGG 2092191 35 100.0 38 ................................... TTGTATTGATGGCGGTGCACAATATTATCAAATGTTAA 2092118 35 100.0 38 ................................... CAATAAGATCAATATTATTAATATTATCAAGCTGGCTA 2092045 35 100.0 40 ................................... CTCCTTTATAAACATTATAATAAATAATCGTAACATACAA 2091970 35 100.0 37 ................................... TCTTCACCTTCTTCATGGAATTCGCCTTCATCATCAA 2091898 35 97.1 41 ...........A....................... TGTAAACCAATAGCTTTATTTTTATGGCCAAATGCTGCAGA 2091822 35 100.0 36 ................................... GCTTCATAAACTGCGATAACACACATAATAATTCTC 2091751 35 94.3 40 .......T...A....................... TTATCGGAGTTGAGCCAGCTTCACGCATCAATTAGTTTTT 2091676 35 100.0 36 ................................... CCCTAAAATTGATTTCTGACCGCTCGCAGTCGGACC 2091605 35 88.6 40 .......T...A.....T......A.......... GACATTTCGTTCAAGGTAACTTCTTGCTTCATTAAGTGCG 2091530 34 74.3 0 .......T...AT...T....-...A.....T.CT | G [2091500] ========== ====== ====== ====== =================================== ========================================= ================== 15 35 97.0 38 GTTGCAACAGTGCTTACCGTTTACGGTATTGAAAC # Left flank : ACTTGGTATTAAAACGGCACTTGGTATGGGTGGTGTGAAGTGTGAAATTATAGAATAGTTTCCACTAGAAATATATGAATGTTAAAAAGTTAATATTCATATATTATTGGCTTTATCTGAATTTATAGATAGAGTTTTTTGTACAGTTTTACTTGTTTATCTGGGTATAGTAGATAGTATTTTAATTGTCTAAATATGGTATTAAATGAGAAGAATTGACATGGATATTATGGTATGGTCTTAGACTAAGGGTAATAAGGGTAGATGATTGATTATATTTTTCTTTAAACTCAAATGAAAAGAAAATGAACTTAATTGTTGACGTAAAATCTATAAACCCTTATAATAACTGTAATCTTAGAAAAATCATTTACCACTAGTATTTATCTATGCTCATCGACATTTTAGATGCAATGGGAGCACAATTTGACCGTTTACGGTGTGAGGTTTGCCAAAACCTATTTTTAAGCCACATGAATACTGGCTTTCTAAGACACGCT # Right flank : ACAGATGGTGAGGTAGAAGCGGGCACAGCGCAACGATGAAATCCTCTATATTGCAGTTATTTATACAGATTGAAGGTGTAAATAAAGGTGATAAGGGGTTGCACTATATTTTTATATCTAATAGAAAACGAGTGAATCTTTTGAATTCACTCGTTTTTTTTATGTCTTAGTTTTTTTGAATTTGGTTATATTAGCTTTCATCTTATACTAAAGACGTAGCCGATGAGCGGTGATAATCTTAATATGTTTAGGGGATCCTAGTTTTGCATCAGATTATTTGTAGCTTGTTGGGGATTGTAGAAAATATGTATAGCGTTAGGTATAGGAGGTAGTATATGAACATTAATTGGAATGGATTATTTTAATAATAGTATATTTAGTTGTAATGATAGGAGGGATGTTATGTCGCCTTTAGCAGTGGATTCTGCAGTAGCAGTGTTAGTAGCGGTGCTTGATGCACTTGAAGAGTAATTTTATTTATGTATGTTGATCGGTTAAAG # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAGTGCTTACCGTTTACGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //