Array 1 64461-63942 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCHB010000030.1 Escherichia coli strain GCPRC143B Contig_30_106.598, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 64460 29 100.0 33 ............................. TATTCGAGAATATTAATCTGTCTATATATGCGC 64398 29 100.0 32 ............................. GTCTGTTATGCGAATATTTTTATTCTACTTTA 64337 29 100.0 32 ............................. GTTTTTACTCTCTGCCGCTGAGCGTCACACGG 64276 29 100.0 32 ............................. GACTGCATATGAGCACGAGACACCCGGTAATT 64215 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 64154 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 64093 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 64031 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 63970 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGGTTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGAGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 81821-79963 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCHB010000030.1 Escherichia coli strain GCPRC143B Contig_30_106.598, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 81820 29 100.0 32 ............................. TCCGTAATAGCCGAACAAATCACCGAGTTTGA 81759 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 81698 29 100.0 32 ............................. TTTTCGGTAGTCGCGGCGGCGGGTACGTGATT 81637 28 96.6 32 .................-........... ATGATCGCCGCCATGATTACTTGCCTTTTTTG 81577 29 100.0 32 ............................. CCGCCCATTGAATTAGCGAGGCGCATAATAGT 81516 29 100.0 32 ............................. TCCGAGCGCGTAATAGCGCGCGCCCGGAAACA 81455 29 100.0 32 ............................. TGCCAGGAGTGTTTTGATAAATATATTAGAGA 81394 29 100.0 32 ............................. CGTTGACCGCCATCAAAAATGGTACAACCTCG 81333 29 100.0 32 ............................. CGACCGCGTGGGCGTCTACGTGGGGGATCAGA 81272 29 100.0 32 ............................. TAAATTAAAAATCGCCCGCACCGACTACCGAT 81211 29 100.0 32 ............................. CGGGCTAGTCCGTTGTGATCGCTGCGGCCACG 81150 29 100.0 32 ............................. ATTATCAGCGTTTACTGAATATCGATCATTAC 81089 29 100.0 32 ............................. TTGGCTGGGGCCGGAATCCGGCTGGCGGGGAT 81028 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 80967 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 80906 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 80845 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 80784 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 80723 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 80662 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 80601 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 80540 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 80479 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 80418 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 80357 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 80296 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 80235 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 80174 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 80113 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 80052 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 79991 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATATATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //