Array 1 8872-8544 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUFY01000024.1 Veillonella montpellierensis DSM 17217 K357DRAFT_scaffold00021.21_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8871 28 96.4 32 A........................... TGAAAAGCTGTTTGAAATAACTGAAGCGTTGG 8811 28 92.9 32 ...........TG............... TGTTGGTGTTGCCAACGGGGTGCGATTAAGGC 8751 28 100.0 32 ............................ TCTAAGCCTGATATAGCTATAGAGATGTGGTC 8691 28 100.0 32 ............................ ATTGTTCAAAAAGTTTCTTACTGACTTTGACA 8631 28 92.9 32 ........................A..T CACGATTCGTATGTTCGTTGGGGCATACTCAA 8571 27 89.3 0 ...................-....T..T | G [8550] ========== ====== ====== ====== ============================ ================================ ================== 6 28 95.2 32 GTTAACTACCGCATAGGTAGCTTAGAAA # Left flank : TCAAATCCAGATATTACTTCGATTGGTATAAAAGCACCTTTTGATGCAATCATTATTAATCCTGCCGCGTATACCCACACGTCGGTAGCCATTTTAGATGCCTTACAAGGCGTACAACTACCCACCGTAGAGGTGCACATTTCTAACCCCCGCCAGAGAGAATCATTTCGTCATACTTCCTACGTAGGTATCTATGCAGAAAAGACTATCCTAGGGGAAGGATTAGAGGGCTATCTACACGCATTAGAATATATAGCAAATACCTATCAACCTACTACATAAGACGTGGCACGATAGTGGAGAATCTACTATGCATAATGTAATGCCTATTATCTAATCAGCCGCCTATCTACTATCTGCTTACGCACTACATATGCATGGTGTCAATACACATTAATAGGTACTCTATTATGACAGAATGTAGTGCCTACTGTATAGTTTCTAACATGCTAATAGATATCTTAGCAAGCGATGATGGTTTACTGACTTTTATACTCAAT # Right flank : ATCTAACATGCTAGTAGGTACTGTATCCTCTTCTACTAGGCACTATATAAACATGCCTACATATAAATTGACATCCCACATATCTAGTATATATGAAACGATCGTCGTGCTCCTTTCATACAAAAAGATTGTTACCTAACCGATTCATCATAAACAATGAATACCGATAGGTAACAATCTTTTTTATATATATAGTAACTAGTAAGGAGTATATACAAGTATGTACTGAATTGAATACGCACGATATACGTTAGCATACAACAAGACTAGGCTTAGTGCCATGCCTACTAAATCGATTCGTCCGGATCTAGTATCATTTCACTAAGTGACAAGCTACTTTATGTCCTACTTCAATATCTCGCAATAATGGTTTTTCTCGTAAGCAAATATCTTGACATTGAATGCAACGATTTTGGAAAGGACAGCCAACTGGTATATCTGCAGGACTTGGCACATCGCCAACCAAGGCTTCAATTGTATACTGTGGAGATTTCTTCACT # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTACCGCATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: R [matched GTTCACTACCGCATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 21722-21154 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUFY01000008.1 Veillonella montpellierensis DSM 17217 K357DRAFT_scaffold00007.7_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 21721 28 96.4 32 ...........T................ GTTTTATTCTTCAATTTCTGCATGTATATTTC 21661 28 96.4 32 ...........T................ ACTTTGTTTTTCGCTTACGATGATGCCTTGAA 21601 28 96.4 32 ...........T................ AATTATTGTGTTTGATATGACGCATATCTTAA 21541 28 100.0 32 ............................ TCTTTCGCTTATCATCGTACGCTTTTTATTAT 21481 28 92.9 32 .................C..A....... TCACAAATCAAAGGTTTTATTTCAAGAAAGAC 21421 28 96.4 32 .......G.................... GCAAAATTAGAGAACAAAATAAGCATATCACC 21361 28 100.0 32 ............................ ATTCGAAAATTGTTTCTCGCTACTTCTTCTTT 21301 28 100.0 32 ............................ AGTTGTGGGCAGAAGCTCTTCAATACTACTAC 21241 28 100.0 32 ............................ TTTTGTAATGCCTGTTTGACAGCTGCGATCCT 21181 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.8 32 GTTAACTACCGCATAGGTAGCTTAGAAA # Left flank : ATTTGCAAACATTACAACAGGTGTGGAGATTGCAAGCCTTTGAGGAATATTTGCACATAAAAGGGATTCGTCCAGTGCCAGAAAAAAGAGTGAAAGGCTATGCGACATATTCACGTTATCAACTGGATGGCTCGGTCCATCAAAAAGCGAAGCGTTTTTCTAAACGCCATGAAGGGGTAACCTATGAAGAAGCACTTAGCTTTATGAAACAGAAACGAGGCATTAGCAATATGCCCTATATAAAAATGAGGAGCTTGACTAGTAAACAATCTTTCAGTCTATTTATTAAGAAAACGCTAACAGACATGCCTAAACAGGGGCGTTTTAATGCATATGGTCTAAGTGTTGATGGTACAGTGCCAGAATTTTAACCCAAATTTTATAGGAGTATGAAAACATCAGAATATATGGGAGTCTTTTGTAAGAGATGAAAAAAGGGTAAAATATTAGATAGTCAAATGATGCTAGTAATACTCCATATTTTAAGGTATACTGTTCTT # Right flank : ATAGAACGTTTAGCAGTTTGATCGCTGTTAGAGTTGGTCCTAACAAGCAATTTGATAGCCCCGTATTGTTGGCTTTTACTATCTATGGTATAATAAATATAAATTAACATGATCGGATTATAATTGCACAGTCAAGATAAGACGTACATTGATGATAAGGGTACGTTTTTTTGTGCTTATATATCATTTGTCACATGGAACGGCAAATGTACAAATACATACTACATAGCAACAAATCTGCATCAGTGAGGACGGCTTTAGAATCTTGCTACACCATGCACAGTGTTGTGAGTGCTATCATTTGCTAAGAAGGACAAATGTCATAAGATCGGTAATAGTAACAGTATAGGTATATCTAATAAGTATAGGAGGAAACATTGGATAATATACATGAACAAGCGACAGCTATAAAAGCTGCCAAGACAACAACATCGAAAGTTCGTAATACACGTACTCGTCATAATACGACTAAGGGAGATACTACATCTCATTTGACTACC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTACCGCATAGGTAGCTTAGAAA # Alternate repeat : GTTAACTACCGTATAGGTAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGCATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //